Wall clock time and date at job start Mon Mar 30 2020 03:13:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08992 * 109.47362 * 2 1
4 4 C 1.50708 * 109.46854 * 240.00202 * 2 1 3
5 5 H 1.08002 * 119.99627 * 245.46188 * 4 2 1
6 6 C 1.37867 * 119.99988 * 65.45887 * 4 2 1
7 7 N 1.31514 * 120.00194 * 9.58180 * 6 4 2
8 8 Si 1.86805 * 120.00033 * 189.57779 * 6 4 2
9 9 H 1.48498 * 109.46879 * 84.99803 * 8 6 4
10 10 H 1.48505 * 109.46965 * 204.99675 * 8 6 4
11 11 H 1.48494 * 109.46986 * 324.99564 * 8 6 4
12 12 S 1.81399 * 109.47027 * 120.00493 * 2 1 3
13 13 O 1.42105 * 109.47009 * 54.05451 * 12 2 1
14 14 C 1.76207 * 102.99927 * 304.99878 * 12 2 1
15 15 C 1.38230 * 120.00023 * 89.99898 * 14 12 2
16 16 C 1.38234 * 119.99761 * 179.97438 * 15 14 12
17 17 C 1.38231 * 120.00041 * 0.09396 * 16 15 14
18 18 C 1.38230 * 120.00158 * 359.86165 * 17 16 15
19 19 C 1.38234 * 119.99390 * 269.97924 * 14 12 2
20 20 H 1.09003 * 109.46890 * 304.31886 * 1 2 3
21 21 H 1.09003 * 109.46934 * 64.31280 * 1 2 3
22 22 H 1.09000 * 109.47329 * 184.31273 * 1 2 3
23 23 H 0.97006 * 120.00515 * 180.02562 * 7 6 4
24 24 H 1.07997 * 119.99992 * 359.70162 * 15 14 12
25 25 H 1.08002 * 119.99725 * 179.97438 * 16 15 14
26 26 H 1.08000 * 119.99875 * 179.97438 * 17 16 15
27 27 H 1.08003 * 120.00069 * 180.02562 * 18 17 16
28 28 H 1.07990 * 120.00623 * 359.97438 * 19 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2306
5 1 2.5785 -1.6371 -1.1339
6 6 1.7945 -0.1774 -2.4796
7 7 1.2996 1.0358 -2.5935
8 14 2.1753 -1.1783 -4.0102
9 1 1.0230 -2.0607 -4.3239
10 1 2.4222 -0.2616 -5.1523
11 1 3.3835 -2.0078 -3.7712
12 16 2.1347 -0.8553 1.4811
13 8 1.5510 -2.1490 1.5524
14 6 1.3383 0.0117 2.7922
15 6 0.1014 -0.4063 3.2462
16 6 -0.5230 0.2735 4.2752
17 6 0.0886 1.3724 4.8488
18 6 1.3259 1.7899 4.3954
19 6 1.9509 1.1095 3.3670
20 1 -0.3633 0.5794 0.8488
21 1 -0.3633 0.4455 -0.9261
22 1 -0.3634 -1.0247 0.0773
23 1 1.1319 1.4107 -3.4723
24 1 -0.3791 -1.2613 2.7940
25 1 -1.4896 -0.0528 4.6296
26 1 -0.3994 1.9038 5.6525
27 1 1.8040 2.6482 4.8439
28 1 2.9175 1.4356 3.0129
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000082788108.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:13:18
Heat of formation + Delta-G solvation = -42.774329 kcal
Electronic energy + Delta-G solvation = -13055.004567 eV
Core-core repulsion = 10775.404597 eV
Total energy + Delta-G solvation = -2279.599969 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 224.061 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.78339 -36.55428 -35.90924 -32.60786 -31.80939 -31.69869 -27.33420 -23.78663
-23.51325 -23.21881 -19.17820 -18.30736 -17.68904 -16.91697 -16.26053 -15.96043
-15.60809 -15.08548 -14.78760 -14.25485 -14.02843 -13.70310 -13.36756 -13.13995
-12.87093 -12.75923 -12.59866 -12.33167 -12.07681 -11.96467 -11.25614 -10.70463
-10.52443 -10.04794 -9.82052 -8.97316 -8.21419 -6.33858 0.10890 0.49825
1.27646 1.38610 1.42401 1.51388 2.19963 2.39218 2.84986 3.07692
3.26371 4.00375 4.15461 4.24955 4.57051 4.59509 4.67665 4.71492
4.81975 4.93329 5.14297 5.36133 5.46987 5.47393 5.53661 5.55553
5.65042 6.06071 6.10684 6.74115 7.32658 8.86672
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.049651 B = 0.007930 C = 0.007617
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 563.796143 B = 3530.081798 C = 3675.220615
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.249 4.249
3 H 0.082 0.918
4 C -0.531 4.531
5 H 0.056 0.944
6 C 0.030 3.970
7 N -0.905 5.905
8 Si 0.947 3.053
9 H -0.286 1.286
10 H -0.274 1.274
11 H -0.259 1.259
12 S 1.344 4.656
13 O -0.928 6.928
14 C -0.462 4.462
15 C -0.086 4.086
16 C -0.151 4.151
17 C -0.093 4.093
18 C -0.136 4.136
19 C -0.050 4.050
20 H 0.035 0.965
21 H 0.043 0.957
22 H 0.010 0.990
23 H 0.265 0.735
24 H 0.089 0.911
25 H 0.134 0.866
26 H 0.156 0.844
27 H 0.165 0.835
28 H 0.168 0.832
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.123 4.710 12.678 13.880
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.368 4.368
3 H 0.100 0.900
4 C -0.570 4.570
5 H 0.075 0.925
6 C -0.172 4.172
7 N -0.543 5.543
8 Si 0.772 3.228
9 H -0.212 1.212
10 H -0.199 1.199
11 H -0.183 1.183
12 S 1.547 4.453
13 O -0.924 6.924
14 C -0.559 4.559
15 C -0.105 4.105
16 C -0.170 4.170
17 C -0.110 4.110
18 C -0.155 4.155
19 C -0.069 4.069
20 H 0.054 0.946
21 H 0.062 0.938
22 H 0.029 0.971
23 H 0.074 0.926
24 H 0.107 0.893
25 H 0.152 0.848
26 H 0.174 0.826
27 H 0.182 0.818
28 H 0.186 0.814
Dipole moment (debyes) X Y Z Total
from point charges 3.700 4.048 12.633 13.772
hybrid contribution -2.695 -0.705 -1.348 3.095
sum 1.005 3.343 11.285 11.812
Atomic orbital electron populations
1.21549 0.98374 0.97501 1.00069 1.24916 0.97859 1.05753 1.08246
0.89988 1.20764 1.37340 1.07947 0.90967 0.92548 1.25615 0.94575
0.95390 1.01601 1.70040 1.44537 1.15000 1.24694 0.85736 0.78903
0.78934 0.79227 1.21227 1.19920 1.18278 1.68028 1.13064 0.80829
0.83420 1.92859 1.79748 1.34504 1.85280 1.27854 1.04251 1.08859
1.14962 1.21068 0.94692 0.98090 0.96656 1.21451 1.00968 0.97455
0.97152 1.21696 0.95422 0.94988 0.98927 1.21746 0.95637 1.00895
0.97180 1.21371 1.00377 0.91122 0.94019 0.94597 0.93782 0.97056
0.92574 0.89313 0.84832 0.82611 0.81762 0.81405
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.99 8.55 71.98 0.62 -5.37 15
2 C -0.25 -12.20 2.66 29.85 0.08 -12.12 15
3 H 0.08 3.99 8.09 -2.39 -0.02 3.98 15
4 C -0.53 -29.12 8.50 25.60 0.22 -28.90 15
5 H 0.06 3.07 7.74 -2.91 -0.02 3.05 15
6 C 0.03 1.66 5.16 84.65 0.44 2.10 15
7 N -0.91 -51.34 12.16 21.44 0.26 -51.08 15
8 Si 0.95 43.40 29.55 68.60 2.03 45.43 15
9 H -0.29 -13.36 7.11 99.48 0.71 -12.65 15
10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15
11 H -0.26 -11.30 7.11 99.48 0.71 -10.60 15
12 S 1.34 53.77 13.03 -56.49 -0.74 53.04 15
13 O -0.93 -48.01 16.67 -148.98 -2.48 -50.49 15
14 C -0.46 -16.15 4.82 22.27 0.11 -16.04 15
15 C -0.09 -3.19 8.35 22.27 0.19 -3.00 15
16 C -0.15 -4.38 10.05 22.27 0.22 -4.16 15
17 C -0.09 -2.09 10.05 22.27 0.22 -1.87 15
18 C -0.14 -2.92 10.05 22.27 0.22 -2.69 15
19 C -0.05 -1.30 9.75 22.27 0.22 -1.08 15
20 H 0.04 1.66 6.70 -2.39 -0.02 1.64 15
21 H 0.04 2.45 6.82 -2.39 -0.02 2.43 15
22 H 0.01 0.57 7.97 -2.39 -0.02 0.55 15
23 H 0.27 14.25 8.31 -92.70 -0.77 13.48 15
24 H 0.09 3.82 7.46 -2.91 -0.02 3.80 15
25 H 0.13 3.27 8.06 -2.91 -0.02 3.24 15
26 H 0.16 2.33 8.06 -2.91 -0.02 2.31 15
27 H 0.16 2.18 8.06 -2.91 -0.02 2.16 15
28 H 0.17 3.05 8.06 -2.92 -0.02 3.03 15
Total: -1.00 -73.85 255.98 2.74 -71.10
By element:
Atomic # 1 Polarization: 3.99 SS G_CDS: 1.14 Total: 5.13 kcal
Atomic # 6 Polarization: -75.66 SS G_CDS: 2.53 Total: -73.13 kcal
Atomic # 7 Polarization: -51.34 SS G_CDS: 0.26 Total: -51.08 kcal
Atomic # 8 Polarization: -48.01 SS G_CDS: -2.48 Total: -50.49 kcal
Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal
Atomic # 16 Polarization: 53.77 SS G_CDS: -0.74 Total: 53.04 kcal
Total: -73.85 2.74 -71.10 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082788108.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.330 kcal
(2) G-P(sol) polarization free energy of solvation -73.846 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.516 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.105 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.774 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds