Wall clock time and date at job start Mon Mar 30 2020 03:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47362 * 2 1 4 4 C 1.50708 * 109.46854 * 240.00202 * 2 1 3 5 5 H 1.08002 * 119.99627 * 245.46188 * 4 2 1 6 6 C 1.37867 * 119.99988 * 65.45887 * 4 2 1 7 7 N 1.31514 * 120.00194 * 9.58180 * 6 4 2 8 8 Si 1.86805 * 120.00033 * 189.57779 * 6 4 2 9 9 H 1.48498 * 109.46879 * 84.99803 * 8 6 4 10 10 H 1.48505 * 109.46965 * 204.99675 * 8 6 4 11 11 H 1.48494 * 109.46986 * 324.99564 * 8 6 4 12 12 S 1.81399 * 109.47027 * 120.00493 * 2 1 3 13 13 O 1.42105 * 109.47009 * 54.05451 * 12 2 1 14 14 C 1.76207 * 102.99927 * 304.99878 * 12 2 1 15 15 C 1.38230 * 120.00023 * 89.99898 * 14 12 2 16 16 C 1.38234 * 119.99761 * 179.97438 * 15 14 12 17 17 C 1.38231 * 120.00041 * 0.09396 * 16 15 14 18 18 C 1.38230 * 120.00158 * 359.86165 * 17 16 15 19 19 C 1.38234 * 119.99390 * 269.97924 * 14 12 2 20 20 H 1.09003 * 109.46890 * 304.31886 * 1 2 3 21 21 H 1.09003 * 109.46934 * 64.31280 * 1 2 3 22 22 H 1.09000 * 109.47329 * 184.31273 * 1 2 3 23 23 H 0.97006 * 120.00515 * 180.02562 * 7 6 4 24 24 H 1.07997 * 119.99992 * 359.70162 * 15 14 12 25 25 H 1.08002 * 119.99725 * 179.97438 * 16 15 14 26 26 H 1.08000 * 119.99875 * 179.97438 * 17 16 15 27 27 H 1.08003 * 120.00069 * 180.02562 * 18 17 16 28 28 H 1.07990 * 120.00623 * 359.97438 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5785 -1.6371 -1.1339 6 6 1.7945 -0.1774 -2.4796 7 7 1.2996 1.0358 -2.5935 8 14 2.1753 -1.1783 -4.0102 9 1 1.0230 -2.0607 -4.3239 10 1 2.4222 -0.2616 -5.1523 11 1 3.3835 -2.0078 -3.7712 12 16 2.1347 -0.8553 1.4811 13 8 1.5510 -2.1490 1.5524 14 6 1.3383 0.0117 2.7922 15 6 0.1014 -0.4063 3.2462 16 6 -0.5230 0.2735 4.2752 17 6 0.0886 1.3724 4.8488 18 6 1.3259 1.7899 4.3954 19 6 1.9509 1.1095 3.3670 20 1 -0.3633 0.5794 0.8488 21 1 -0.3633 0.4455 -0.9261 22 1 -0.3634 -1.0247 0.0773 23 1 1.1319 1.4107 -3.4723 24 1 -0.3791 -1.2613 2.7940 25 1 -1.4896 -0.0528 4.6296 26 1 -0.3994 1.9038 5.6525 27 1 1.8040 2.6482 4.8439 28 1 2.9175 1.4356 3.0129 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082788108.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:18 Heat of formation + Delta-G solvation = -42.774329 kcal Electronic energy + Delta-G solvation = -13055.004567 eV Core-core repulsion = 10775.404597 eV Total energy + Delta-G solvation = -2279.599969 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.78339 -36.55428 -35.90924 -32.60786 -31.80939 -31.69869 -27.33420 -23.78663 -23.51325 -23.21881 -19.17820 -18.30736 -17.68904 -16.91697 -16.26053 -15.96043 -15.60809 -15.08548 -14.78760 -14.25485 -14.02843 -13.70310 -13.36756 -13.13995 -12.87093 -12.75923 -12.59866 -12.33167 -12.07681 -11.96467 -11.25614 -10.70463 -10.52443 -10.04794 -9.82052 -8.97316 -8.21419 -6.33858 0.10890 0.49825 1.27646 1.38610 1.42401 1.51388 2.19963 2.39218 2.84986 3.07692 3.26371 4.00375 4.15461 4.24955 4.57051 4.59509 4.67665 4.71492 4.81975 4.93329 5.14297 5.36133 5.46987 5.47393 5.53661 5.55553 5.65042 6.06071 6.10684 6.74115 7.32658 8.86672 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.049651 B = 0.007930 C = 0.007617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.796143 B = 3530.081798 C = 3675.220615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.249 4.249 3 H 0.082 0.918 4 C -0.531 4.531 5 H 0.056 0.944 6 C 0.030 3.970 7 N -0.905 5.905 8 Si 0.947 3.053 9 H -0.286 1.286 10 H -0.274 1.274 11 H -0.259 1.259 12 S 1.344 4.656 13 O -0.928 6.928 14 C -0.462 4.462 15 C -0.086 4.086 16 C -0.151 4.151 17 C -0.093 4.093 18 C -0.136 4.136 19 C -0.050 4.050 20 H 0.035 0.965 21 H 0.043 0.957 22 H 0.010 0.990 23 H 0.265 0.735 24 H 0.089 0.911 25 H 0.134 0.866 26 H 0.156 0.844 27 H 0.165 0.835 28 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 4.710 12.678 13.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.368 4.368 3 H 0.100 0.900 4 C -0.570 4.570 5 H 0.075 0.925 6 C -0.172 4.172 7 N -0.543 5.543 8 Si 0.772 3.228 9 H -0.212 1.212 10 H -0.199 1.199 11 H -0.183 1.183 12 S 1.547 4.453 13 O -0.924 6.924 14 C -0.559 4.559 15 C -0.105 4.105 16 C -0.170 4.170 17 C -0.110 4.110 18 C -0.155 4.155 19 C -0.069 4.069 20 H 0.054 0.946 21 H 0.062 0.938 22 H 0.029 0.971 23 H 0.074 0.926 24 H 0.107 0.893 25 H 0.152 0.848 26 H 0.174 0.826 27 H 0.182 0.818 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.700 4.048 12.633 13.772 hybrid contribution -2.695 -0.705 -1.348 3.095 sum 1.005 3.343 11.285 11.812 Atomic orbital electron populations 1.21549 0.98374 0.97501 1.00069 1.24916 0.97859 1.05753 1.08246 0.89988 1.20764 1.37340 1.07947 0.90967 0.92548 1.25615 0.94575 0.95390 1.01601 1.70040 1.44537 1.15000 1.24694 0.85736 0.78903 0.78934 0.79227 1.21227 1.19920 1.18278 1.68028 1.13064 0.80829 0.83420 1.92859 1.79748 1.34504 1.85280 1.27854 1.04251 1.08859 1.14962 1.21068 0.94692 0.98090 0.96656 1.21451 1.00968 0.97455 0.97152 1.21696 0.95422 0.94988 0.98927 1.21746 0.95637 1.00895 0.97180 1.21371 1.00377 0.91122 0.94019 0.94597 0.93782 0.97056 0.92574 0.89313 0.84832 0.82611 0.81762 0.81405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.99 8.55 71.98 0.62 -5.37 15 2 C -0.25 -12.20 2.66 29.85 0.08 -12.12 15 3 H 0.08 3.99 8.09 -2.39 -0.02 3.98 15 4 C -0.53 -29.12 8.50 25.60 0.22 -28.90 15 5 H 0.06 3.07 7.74 -2.91 -0.02 3.05 15 6 C 0.03 1.66 5.16 84.65 0.44 2.10 15 7 N -0.91 -51.34 12.16 21.44 0.26 -51.08 15 8 Si 0.95 43.40 29.55 68.60 2.03 45.43 15 9 H -0.29 -13.36 7.11 99.48 0.71 -12.65 15 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 11 H -0.26 -11.30 7.11 99.48 0.71 -10.60 15 12 S 1.34 53.77 13.03 -56.49 -0.74 53.04 15 13 O -0.93 -48.01 16.67 -148.98 -2.48 -50.49 15 14 C -0.46 -16.15 4.82 22.27 0.11 -16.04 15 15 C -0.09 -3.19 8.35 22.27 0.19 -3.00 15 16 C -0.15 -4.38 10.05 22.27 0.22 -4.16 15 17 C -0.09 -2.09 10.05 22.27 0.22 -1.87 15 18 C -0.14 -2.92 10.05 22.27 0.22 -2.69 15 19 C -0.05 -1.30 9.75 22.27 0.22 -1.08 15 20 H 0.04 1.66 6.70 -2.39 -0.02 1.64 15 21 H 0.04 2.45 6.82 -2.39 -0.02 2.43 15 22 H 0.01 0.57 7.97 -2.39 -0.02 0.55 15 23 H 0.27 14.25 8.31 -92.70 -0.77 13.48 15 24 H 0.09 3.82 7.46 -2.91 -0.02 3.80 15 25 H 0.13 3.27 8.06 -2.91 -0.02 3.24 15 26 H 0.16 2.33 8.06 -2.91 -0.02 2.31 15 27 H 0.16 2.18 8.06 -2.91 -0.02 2.16 15 28 H 0.17 3.05 8.06 -2.92 -0.02 3.03 15 Total: -1.00 -73.85 255.98 2.74 -71.10 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.14 Total: 5.13 kcal Atomic # 6 Polarization: -75.66 SS G_CDS: 2.53 Total: -73.13 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.26 Total: -51.08 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -2.48 Total: -50.49 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 53.77 SS G_CDS: -0.74 Total: 53.04 kcal Total: -73.85 2.74 -71.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788108.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.330 kcal (2) G-P(sol) polarization free energy of solvation -73.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds