Wall clock time and date at job start Mon Mar 30 2020 03:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2 6 6 C 1.38216 * 119.99744 * 359.97134 * 5 4 3 7 7 C 1.38208 * 120.00322 * 180.21766 * 2 1 3 8 8 S 1.76206 * 120.00134 * 0.06573 * 7 2 1 9 9 O 1.42094 * 102.99865 * 161.31778 * 8 7 2 10 10 C 1.81405 * 102.99455 * 275.16832 * 8 7 2 11 11 C 1.50701 * 109.46561 * 179.97438 * 10 8 7 12 12 H 1.07998 * 120.00370 * 0.02562 * 11 10 8 13 13 C 1.37878 * 119.99844 * 179.97438 * 11 10 8 14 14 N 1.31522 * 119.99846 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00194 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47090 * 60.00357 * 15 13 11 17 17 H 1.48501 * 109.47238 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47355 * 300.00378 * 15 13 11 19 19 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 20 20 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 21 21 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 22 22 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 23 23 H 1.07999 * 119.99941 * 180.25946 * 4 3 2 24 24 H 1.08005 * 120.00230 * 179.97438 * 5 4 3 25 25 H 1.08002 * 119.99734 * 179.97438 * 6 5 4 26 26 H 1.08992 * 109.47163 * 299.99854 * 10 8 7 27 27 H 1.08996 * 109.47020 * 60.00633 * 10 8 7 28 28 H 0.97001 * 119.99312 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0057 6 6 3.5806 -1.1968 0.0003 7 6 2.1981 -1.1969 -0.0045 8 16 1.3172 -2.7229 -0.0121 9 8 2.2938 -3.6535 -0.4587 10 6 0.9736 -3.0043 1.7468 11 6 0.2110 -4.2939 1.9095 12 1 -0.0413 -4.8853 1.0417 13 6 -0.1636 -4.7193 3.1663 14 7 0.1441 -3.9994 4.2231 15 14 -1.1082 -6.3182 3.3681 16 1 -0.2975 -7.4428 2.8357 17 1 -1.3886 -6.5492 4.8081 18 1 -2.3889 -6.2342 2.6213 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5137 21 1 -0.3634 0.8899 0.5139 22 1 1.6582 2.1327 0.0004 23 1 4.1203 2.1328 0.0101 24 1 5.3517 0.0002 0.0099 25 1 4.1207 -2.1321 -0.0002 26 1 1.9135 -3.0658 2.2952 27 1 0.3783 -2.1789 2.1372 28 1 -0.1199 -4.2986 5.1073 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082789187.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:02 Heat of formation + Delta-G solvation = -26.590158 kcal Electronic energy + Delta-G solvation = -12878.749111 eV Core-core repulsion = 10599.850940 eV Total energy + Delta-G solvation = -2278.898171 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.85524 -34.75056 -33.13531 -32.52343 -30.67280 -28.57658 -26.62641 -23.30648 -22.39110 -21.20208 -17.46818 -16.44415 -15.99286 -15.17169 -14.93000 -14.62457 -13.79334 -13.70541 -13.19691 -12.84778 -12.65129 -12.26195 -11.90916 -11.77632 -11.38836 -11.13099 -10.98246 -10.83711 -10.62627 -10.31244 -9.61487 -9.08387 -8.77009 -8.55345 -8.43434 -7.26983 -6.16980 -4.24760 1.35908 1.65136 2.77996 3.27497 3.31635 3.35788 3.73285 4.10083 4.34767 4.81261 5.05063 5.14513 5.20152 5.26504 5.48564 5.68755 5.85746 5.88482 6.10045 6.17841 6.43707 6.62283 6.69472 6.77008 7.07896 7.18182 7.25446 7.66783 8.01170 8.79311 9.40096 10.94612 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.042677 B = 0.007643 C = 0.007381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.931305 B = 3662.652497 C = 3792.682931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.014 4.014 3 C -0.143 4.143 4 C -0.098 4.098 5 C -0.147 4.147 6 C -0.054 4.054 7 C -0.444 4.444 8 S 1.272 4.728 9 O -0.877 6.877 10 C -0.255 4.255 11 C -0.518 4.518 12 H 0.064 0.936 13 C 0.069 3.931 14 N -0.885 5.885 15 Si 0.899 3.101 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.270 1.270 19 H 0.082 0.918 20 H 0.084 0.916 21 H 0.072 0.928 22 H 0.122 0.878 23 H 0.118 0.882 24 H 0.117 0.883 25 H 0.125 0.875 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.570 10.507 -7.788 13.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.016 4.016 3 C -0.162 4.162 4 C -0.116 4.116 5 C -0.166 4.166 6 C -0.073 4.073 7 C -0.538 4.538 8 S 1.474 4.526 9 O -0.873 6.873 10 C -0.396 4.396 11 C -0.557 4.557 12 H 0.082 0.918 13 C -0.135 4.135 14 N -0.523 5.523 15 Si 0.726 3.274 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.195 1.195 19 H 0.100 0.900 20 H 0.102 0.898 21 H 0.091 0.909 22 H 0.140 0.860 23 H 0.136 0.864 24 H 0.135 0.865 25 H 0.143 0.857 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.779 9.977 -8.410 13.072 hybrid contribution 1.690 -0.691 1.675 2.478 sum 0.911 9.286 -6.735 11.507 Atomic orbital electron populations 1.21066 0.90608 1.04190 1.03238 1.19587 0.95965 0.91647 0.94363 1.21085 0.94275 0.97578 1.03238 1.21163 0.94550 0.97620 0.98285 1.21167 0.99590 0.92870 1.02971 1.21138 0.93853 0.98347 0.94003 1.28157 1.02310 1.14976 1.08382 1.68853 1.06599 0.80694 0.96490 1.92973 1.61015 1.57379 1.75894 1.24961 1.02616 1.03204 1.08772 1.20407 1.36681 1.05114 0.93540 0.91825 1.24980 0.95619 0.97331 0.95591 1.69973 1.45478 1.38293 0.98512 0.86528 0.80376 0.83253 0.77234 1.19944 1.21041 1.19534 0.89963 0.89770 0.90929 0.86033 0.86418 0.86498 0.85721 0.94079 0.91106 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 9.55 36.00 0.34 -1.27 15 2 C -0.01 -0.22 5.88 -104.63 -0.62 -0.84 15 3 C -0.14 -1.98 9.70 -39.58 -0.38 -2.36 15 4 C -0.10 -1.36 10.05 -39.58 -0.40 -1.76 15 5 C -0.15 -2.32 10.05 -39.58 -0.40 -2.72 15 6 C -0.05 -1.04 9.45 -39.58 -0.37 -1.42 15 7 C -0.44 -8.29 5.63 -39.59 -0.22 -8.52 15 8 S 1.27 26.00 11.73 -107.50 -1.26 24.74 15 9 O -0.88 -22.64 16.78 -35.23 -0.59 -23.24 15 10 C -0.26 -6.44 5.53 36.01 0.20 -6.24 15 11 C -0.52 -14.31 9.13 -34.44 -0.31 -14.62 15 12 H 0.06 1.68 7.71 -52.49 -0.40 1.28 15 13 C 0.07 1.94 5.46 -17.82 -0.10 1.85 15 14 N -0.89 -25.98 13.29 55.43 0.74 -25.24 15 15 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 15 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 19 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.08 1.08 6.00 -51.93 -0.31 0.77 15 21 H 0.07 0.74 8.09 -51.93 -0.42 0.32 15 22 H 0.12 1.30 8.06 -52.49 -0.42 0.88 15 23 H 0.12 1.26 8.06 -52.49 -0.42 0.84 15 24 H 0.12 1.56 8.06 -52.48 -0.42 1.13 15 25 H 0.12 2.57 7.34 -52.49 -0.39 2.19 15 26 H 0.04 1.17 8.14 -51.93 -0.42 0.74 15 27 H 0.07 1.72 7.48 -51.93 -0.39 1.33 15 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 LS Contribution 258.47 15.07 3.90 3.90 Total: -1.00 -35.08 258.47 -7.66 -42.74 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -3.16 Total: -1.10 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: -2.26 Total: -37.91 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.74 Total: -25.24 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.59 Total: -23.24 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 26.00 SS G_CDS: -1.26 Total: 24.74 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -35.08 -7.66 -42.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789187.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.151 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds