Wall clock time and date at job start Mon Mar 30 2020 03:05:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38260 * 119.99559 * 2 1
4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1
5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2
6 6 C 1.38216 * 119.99744 * 359.97134 * 5 4 3
7 7 C 1.38208 * 120.00322 * 180.21766 * 2 1 3
8 8 S 1.76206 * 120.00134 * 0.06573 * 7 2 1
9 9 O 1.42094 * 102.99865 * 161.31778 * 8 7 2
10 10 C 1.81405 * 102.99455 * 275.16832 * 8 7 2
11 11 C 1.50701 * 109.46561 * 179.97438 * 10 8 7
12 12 H 1.07998 * 120.00370 * 0.02562 * 11 10 8
13 13 C 1.37878 * 119.99844 * 179.97438 * 11 10 8
14 14 N 1.31522 * 119.99846 * 0.02562 * 13 11 10
15 15 Si 1.86801 * 120.00194 * 180.02562 * 13 11 10
16 16 H 1.48507 * 109.47090 * 60.00357 * 15 13 11
17 17 H 1.48501 * 109.47238 * 179.97438 * 15 13 11
18 18 H 1.48494 * 109.47355 * 300.00378 * 15 13 11
19 19 H 1.09000 * 109.46985 * 89.99836 * 1 2 3
20 20 H 1.09000 * 109.47001 * 209.99377 * 1 2 3
21 21 H 1.08998 * 109.47342 * 329.99390 * 1 2 3
22 22 H 1.08002 * 120.00476 * 0.02562 * 3 2 1
23 23 H 1.07999 * 119.99941 * 180.25946 * 4 3 2
24 24 H 1.08005 * 120.00230 * 179.97438 * 5 4 3
25 25 H 1.08002 * 119.99734 * 179.97438 * 6 5 4
26 26 H 1.08992 * 109.47163 * 299.99854 * 10 8 7
27 27 H 1.08996 * 109.47020 * 60.00633 * 10 8 7
28 28 H 0.97001 * 119.99312 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1974 0.0000
4 6 3.5803 1.1975 0.0059
5 6 4.2717 0.0002 0.0057
6 6 3.5806 -1.1968 0.0003
7 6 2.1981 -1.1969 -0.0045
8 16 1.3172 -2.7229 -0.0121
9 8 2.2938 -3.6535 -0.4587
10 6 0.9736 -3.0043 1.7468
11 6 0.2110 -4.2939 1.9095
12 1 -0.0413 -4.8853 1.0417
13 6 -0.1636 -4.7193 3.1663
14 7 0.1441 -3.9994 4.2231
15 14 -1.1082 -6.3182 3.3681
16 1 -0.2975 -7.4428 2.8357
17 1 -1.3886 -6.5492 4.8081
18 1 -2.3889 -6.2342 2.6213
19 1 -0.3633 0.0000 -1.0277
20 1 -0.3633 -0.8900 0.5137
21 1 -0.3634 0.8899 0.5139
22 1 1.6582 2.1327 0.0004
23 1 4.1203 2.1328 0.0101
24 1 5.3517 0.0002 0.0099
25 1 4.1207 -2.1321 -0.0002
26 1 1.9135 -3.0658 2.2952
27 1 0.3783 -2.1789 2.1372
28 1 -0.1199 -4.2986 5.1073
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000082789187.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:05:02
Heat of formation + Delta-G solvation = -26.590158 kcal
Electronic energy + Delta-G solvation = -12878.749111 eV
Core-core repulsion = 10599.850940 eV
Total energy + Delta-G solvation = -2278.898171 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 224.061 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-38.85524 -34.75056 -33.13531 -32.52343 -30.67280 -28.57658 -26.62641 -23.30648
-22.39110 -21.20208 -17.46818 -16.44415 -15.99286 -15.17169 -14.93000 -14.62457
-13.79334 -13.70541 -13.19691 -12.84778 -12.65129 -12.26195 -11.90916 -11.77632
-11.38836 -11.13099 -10.98246 -10.83711 -10.62627 -10.31244 -9.61487 -9.08387
-8.77009 -8.55345 -8.43434 -7.26983 -6.16980 -4.24760 1.35908 1.65136
2.77996 3.27497 3.31635 3.35788 3.73285 4.10083 4.34767 4.81261
5.05063 5.14513 5.20152 5.26504 5.48564 5.68755 5.85746 5.88482
6.10045 6.17841 6.43707 6.62283 6.69472 6.77008 7.07896 7.18182
7.25446 7.66783 8.01170 8.79311 9.40096 10.94612
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.042677 B = 0.007643 C = 0.007381
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 655.931305 B = 3662.652497 C = 3792.682931
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.014 4.014
3 C -0.143 4.143
4 C -0.098 4.098
5 C -0.147 4.147
6 C -0.054 4.054
7 C -0.444 4.444
8 S 1.272 4.728
9 O -0.877 6.877
10 C -0.255 4.255
11 C -0.518 4.518
12 H 0.064 0.936
13 C 0.069 3.931
14 N -0.885 5.885
15 Si 0.899 3.101
16 H -0.274 1.274
17 H -0.285 1.285
18 H -0.270 1.270
19 H 0.082 0.918
20 H 0.084 0.916
21 H 0.072 0.928
22 H 0.122 0.878
23 H 0.118 0.882
24 H 0.117 0.883
25 H 0.125 0.875
26 H 0.041 0.959
27 H 0.071 0.929
28 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.570 10.507 -7.788 13.091
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.016 4.016
3 C -0.162 4.162
4 C -0.116 4.116
5 C -0.166 4.166
6 C -0.073 4.073
7 C -0.538 4.538
8 S 1.474 4.526
9 O -0.873 6.873
10 C -0.396 4.396
11 C -0.557 4.557
12 H 0.082 0.918
13 C -0.135 4.135
14 N -0.523 5.523
15 Si 0.726 3.274
16 H -0.199 1.199
17 H -0.210 1.210
18 H -0.195 1.195
19 H 0.100 0.900
20 H 0.102 0.898
21 H 0.091 0.909
22 H 0.140 0.860
23 H 0.136 0.864
24 H 0.135 0.865
25 H 0.143 0.857
26 H 0.059 0.941
27 H 0.089 0.911
28 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -0.779 9.977 -8.410 13.072
hybrid contribution 1.690 -0.691 1.675 2.478
sum 0.911 9.286 -6.735 11.507
Atomic orbital electron populations
1.21066 0.90608 1.04190 1.03238 1.19587 0.95965 0.91647 0.94363
1.21085 0.94275 0.97578 1.03238 1.21163 0.94550 0.97620 0.98285
1.21167 0.99590 0.92870 1.02971 1.21138 0.93853 0.98347 0.94003
1.28157 1.02310 1.14976 1.08382 1.68853 1.06599 0.80694 0.96490
1.92973 1.61015 1.57379 1.75894 1.24961 1.02616 1.03204 1.08772
1.20407 1.36681 1.05114 0.93540 0.91825 1.24980 0.95619 0.97331
0.95591 1.69973 1.45478 1.38293 0.98512 0.86528 0.80376 0.83253
0.77234 1.19944 1.21041 1.19534 0.89963 0.89770 0.90929 0.86033
0.86418 0.86498 0.85721 0.94079 0.91106 0.92556
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.62 9.55 36.00 0.34 -1.27 15
2 C -0.01 -0.22 5.88 -104.63 -0.62 -0.84 15
3 C -0.14 -1.98 9.70 -39.58 -0.38 -2.36 15
4 C -0.10 -1.36 10.05 -39.58 -0.40 -1.76 15
5 C -0.15 -2.32 10.05 -39.58 -0.40 -2.72 15
6 C -0.05 -1.04 9.45 -39.58 -0.37 -1.42 15
7 C -0.44 -8.29 5.63 -39.59 -0.22 -8.52 15
8 S 1.27 26.00 11.73 -107.50 -1.26 24.74 15
9 O -0.88 -22.64 16.78 -35.23 -0.59 -23.24 15
10 C -0.26 -6.44 5.53 36.01 0.20 -6.24 15
11 C -0.52 -14.31 9.13 -34.44 -0.31 -14.62 15
12 H 0.06 1.68 7.71 -52.49 -0.40 1.28 15
13 C 0.07 1.94 5.46 -17.82 -0.10 1.85 15
14 N -0.89 -25.98 13.29 55.43 0.74 -25.24 15
15 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 15
16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15
17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15
18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15
19 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15
20 H 0.08 1.08 6.00 -51.93 -0.31 0.77 15
21 H 0.07 0.74 8.09 -51.93 -0.42 0.32 15
22 H 0.12 1.30 8.06 -52.49 -0.42 0.88 15
23 H 0.12 1.26 8.06 -52.49 -0.42 0.84 15
24 H 0.12 1.56 8.06 -52.48 -0.42 1.13 15
25 H 0.12 2.57 7.34 -52.49 -0.39 2.19 15
26 H 0.04 1.17 8.14 -51.93 -0.42 0.74 15
27 H 0.07 1.72 7.48 -51.93 -0.39 1.33 15
28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15
LS Contribution 258.47 15.07 3.90 3.90
Total: -1.00 -35.08 258.47 -7.66 -42.74
By element:
Atomic # 1 Polarization: 2.06 SS G_CDS: -3.16 Total: -1.10 kcal
Atomic # 6 Polarization: -35.65 SS G_CDS: -2.26 Total: -37.91 kcal
Atomic # 7 Polarization: -25.98 SS G_CDS: 0.74 Total: -25.24 kcal
Atomic # 8 Polarization: -22.64 SS G_CDS: -0.59 Total: -23.24 kcal
Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal
Atomic # 16 Polarization: 26.00 SS G_CDS: -1.26 Total: 24.74 kcal
Total LS contribution 3.90 Total: 3.90 kcal
Total: -35.08 -7.66 -42.74 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082789187.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.151 kcal
(2) G-P(sol) polarization free energy of solvation -35.081 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.930 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.590 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds