Wall clock time and date at job start Mon Mar 30 2020 03:05:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38260 * 119.99559 * 2 1
4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1
5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2
6 6 C 1.38216 * 119.99744 * 359.97134 * 5 4 3
7 7 C 1.38208 * 120.00322 * 180.21766 * 2 1 3
8 8 S 1.76206 * 120.00134 * 0.06573 * 7 2 1
9 9 O 1.42094 * 102.99865 * 161.31778 * 8 7 2
10 10 C 1.81405 * 102.99455 * 275.16832 * 8 7 2
11 11 C 1.50701 * 109.46561 * 179.97438 * 10 8 7
12 12 H 1.07998 * 120.00370 * 0.02562 * 11 10 8
13 13 C 1.37878 * 119.99844 * 179.97438 * 11 10 8
14 14 N 1.31522 * 119.99846 * 0.02562 * 13 11 10
15 15 Si 1.86801 * 120.00194 * 180.02562 * 13 11 10
16 16 H 1.48507 * 109.47090 * 60.00357 * 15 13 11
17 17 H 1.48501 * 109.47238 * 179.97438 * 15 13 11
18 18 H 1.48494 * 109.47355 * 300.00378 * 15 13 11
19 19 H 1.09000 * 109.46985 * 89.99836 * 1 2 3
20 20 H 1.09000 * 109.47001 * 209.99377 * 1 2 3
21 21 H 1.08998 * 109.47342 * 329.99390 * 1 2 3
22 22 H 1.08002 * 120.00476 * 0.02562 * 3 2 1
23 23 H 1.07999 * 119.99941 * 180.25946 * 4 3 2
24 24 H 1.08005 * 120.00230 * 179.97438 * 5 4 3
25 25 H 1.08002 * 119.99734 * 179.97438 * 6 5 4
26 26 H 1.08992 * 109.47163 * 299.99854 * 10 8 7
27 27 H 1.08996 * 109.47020 * 60.00633 * 10 8 7
28 28 H 0.97001 * 119.99312 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1974 0.0000
4 6 3.5803 1.1975 0.0059
5 6 4.2717 0.0002 0.0057
6 6 3.5806 -1.1968 0.0003
7 6 2.1981 -1.1969 -0.0045
8 16 1.3172 -2.7229 -0.0121
9 8 2.2938 -3.6535 -0.4587
10 6 0.9736 -3.0043 1.7468
11 6 0.2110 -4.2939 1.9095
12 1 -0.0413 -4.8853 1.0417
13 6 -0.1636 -4.7193 3.1663
14 7 0.1441 -3.9994 4.2231
15 14 -1.1082 -6.3182 3.3681
16 1 -0.2975 -7.4428 2.8357
17 1 -1.3886 -6.5492 4.8081
18 1 -2.3889 -6.2342 2.6213
19 1 -0.3633 0.0000 -1.0277
20 1 -0.3633 -0.8900 0.5137
21 1 -0.3634 0.8899 0.5139
22 1 1.6582 2.1327 0.0004
23 1 4.1203 2.1328 0.0101
24 1 5.3517 0.0002 0.0099
25 1 4.1207 -2.1321 -0.0002
26 1 1.9135 -3.0658 2.2952
27 1 0.3783 -2.1789 2.1372
28 1 -0.1199 -4.2986 5.1073
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000082789187.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:05:01
Heat of formation + Delta-G solvation = -50.855824 kcal
Electronic energy + Delta-G solvation = -12879.801349 eV
Core-core repulsion = 10599.850940 eV
Total energy + Delta-G solvation = -2279.950409 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 224.061 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.08182 -36.67578 -35.24833 -33.69603 -31.94683 -30.66681 -27.70963 -25.32994
-23.75351 -22.42212 -19.04839 -18.47787 -17.48764 -16.76986 -16.43862 -16.12134
-15.42639 -15.08830 -14.64514 -14.36157 -14.27378 -13.99457 -13.28004 -13.05799
-12.89869 -12.81261 -12.62781 -12.42487 -12.20982 -11.99648 -11.66933 -10.84537
-10.68731 -10.13284 -9.64329 -9.07869 -8.29968 -6.45975 0.02045 0.41550
1.18368 1.40304 1.44155 1.52164 2.11674 2.37413 2.74265 3.00570
3.15748 3.90510 4.01290 4.11100 4.42083 4.53706 4.74908 4.89436
4.94620 5.01454 5.03914 5.10437 5.37930 5.46287 5.47861 5.53311
5.57429 5.90822 6.06882 6.67787 7.23753 8.82555
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.042677 B = 0.007643 C = 0.007381
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 655.931305 B = 3662.652497 C = 3792.682931
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.013 4.013
3 C -0.139 4.139
4 C -0.085 4.085
5 C -0.155 4.155
6 C -0.090 4.090
7 C -0.477 4.477
8 S 1.353 4.647
9 O -0.937 6.937
10 C -0.268 4.268
11 C -0.541 4.541
12 H 0.070 0.930
13 C 0.013 3.987
14 N -0.924 5.924
15 Si 0.967 3.033
16 H -0.277 1.277
17 H -0.279 1.279
18 H -0.245 1.245
19 H 0.115 0.885
20 H 0.070 0.930
21 H 0.099 0.901
22 H 0.166 0.834
23 H 0.161 0.839
24 H 0.138 0.862
25 H 0.090 0.910
26 H -0.010 1.010
27 H 0.073 0.927
28 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.804 12.760 -8.689 15.542
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.014 4.014
3 C -0.158 4.158
4 C -0.103 4.103
5 C -0.175 4.175
6 C -0.109 4.109
7 C -0.575 4.575
8 S 1.556 4.444
9 O -0.933 6.933
10 C -0.406 4.406
11 C -0.580 4.580
12 H 0.088 0.912
13 C -0.188 4.188
14 N -0.563 5.563
15 Si 0.790 3.210
16 H -0.202 1.202
17 H -0.204 1.204
18 H -0.169 1.169
19 H 0.133 0.867
20 H 0.088 0.912
21 H 0.118 0.882
22 H 0.184 0.816
23 H 0.179 0.821
24 H 0.155 0.845
25 H 0.109 0.891
26 H 0.009 0.991
27 H 0.091 0.909
28 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -2.039 12.197 -9.304 15.475
hybrid contribution 2.181 -1.154 1.904 3.116
sum 0.142 11.043 -7.401 13.294
Atomic orbital electron populations
1.21265 0.88128 1.04873 1.05566 1.20055 0.97881 0.90960 0.92500
1.21642 0.94576 0.98462 1.01106 1.21716 0.95033 0.98273 0.95238
1.21438 1.00870 0.92432 1.02712 1.21113 0.94417 0.98640 0.96738
1.27735 1.02358 1.14849 1.12564 1.67983 1.05345 0.79908 0.91160
1.92834 1.63638 1.60804 1.75992 1.25086 0.99951 1.02848 1.12715
1.20894 1.36805 1.06179 0.94136 0.91194 1.25980 0.96545 1.01064
0.95231 1.70101 1.46771 1.40324 0.99061 0.85476 0.79724 0.78188
0.77653 1.20240 1.20402 1.16900 0.86694 0.91162 0.88197 0.81614
0.82118 0.84455 0.89141 0.99128 0.90865 0.92354
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.97 9.55 71.24 0.68 -2.29 15
2 C -0.01 -0.36 5.88 -19.87 -0.12 -0.48 15
3 C -0.14 -3.24 9.70 22.27 0.22 -3.02 15
4 C -0.08 -2.02 10.05 22.27 0.22 -1.79 15
5 C -0.16 -4.72 10.05 22.27 0.22 -4.49 15
6 C -0.09 -3.55 9.45 22.27 0.21 -3.34 15
7 C -0.48 -18.02 5.63 22.27 0.13 -17.90 15
8 S 1.35 57.41 11.73 -56.49 -0.66 56.74 15
9 O -0.94 -50.92 16.78 -148.98 -2.50 -53.42 15
10 C -0.27 -14.22 5.53 71.24 0.39 -13.83 15
11 C -0.54 -30.86 9.13 25.60 0.23 -30.63 15
12 H 0.07 3.78 7.71 -2.91 -0.02 3.76 15
13 C 0.01 0.71 5.46 84.65 0.46 1.18 15
14 N -0.92 -55.81 13.29 21.45 0.28 -55.53 15
15 Si 0.97 43.58 29.54 68.60 2.03 45.60 15
16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15
17 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15
18 H -0.25 -10.03 7.11 99.48 0.71 -9.33 15
19 H 0.11 1.68 8.14 -2.39 -0.02 1.66 15
20 H 0.07 1.70 6.00 -2.39 -0.01 1.68 15
21 H 0.10 1.59 8.09 -2.39 -0.02 1.57 15
22 H 0.17 2.44 8.06 -2.91 -0.02 2.42 15
23 H 0.16 2.47 8.06 -2.91 -0.02 2.45 15
24 H 0.14 3.46 8.06 -2.91 -0.02 3.44 15
25 H 0.09 4.08 7.34 -2.91 -0.02 4.05 15
26 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 15
27 H 0.07 3.73 7.48 -2.39 -0.02 3.71 15
28 H 0.27 15.10 8.31 -92.71 -0.77 14.33 15
Total: -1.00 -80.33 258.47 2.95 -77.39
By element:
Atomic # 1 Polarization: 4.66 SS G_CDS: 1.15 Total: 5.80 kcal
Atomic # 6 Polarization: -79.24 SS G_CDS: 2.65 Total: -76.58 kcal
Atomic # 7 Polarization: -55.81 SS G_CDS: 0.28 Total: -55.53 kcal
Atomic # 8 Polarization: -50.92 SS G_CDS: -2.50 Total: -53.42 kcal
Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal
Atomic # 16 Polarization: 57.41 SS G_CDS: -0.66 Total: 56.74 kcal
Total: -80.33 2.95 -77.39 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082789187.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.532 kcal
(2) G-P(sol) polarization free energy of solvation -80.335 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.803 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.387 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.856 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds