Wall clock time and date at job start Mon Mar 30 2020 02:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38440 * 119.91994 * 2 1 4 4 C 1.38540 * 120.30226 * 180.02562 * 3 2 1 5 5 Cl 1.73601 * 119.93626 * 180.02562 * 4 3 2 6 6 C 1.38028 * 120.12629 * 359.97425 * 4 3 2 7 7 C 1.39703 * 119.82982 * 0.02945 * 6 4 3 8 8 C 1.47821 * 120.14640 * 179.97438 * 7 6 4 9 9 O 1.21767 * 119.99918 * 180.02562 * 8 7 6 10 10 C 1.41807 * 120.00162 * 359.97438 * 8 7 6 11 11 H 1.08003 * 119.99598 * 6.83894 * 10 8 7 12 12 C 1.40347 * 120.00373 * 186.83996 * 10 8 7 13 13 N 1.30530 * 120.00276 * 184.73092 * 12 10 8 14 14 Si 1.86805 * 119.99605 * 4.44963 * 12 10 8 15 15 H 1.48503 * 109.46691 * 180.27794 * 14 12 10 16 16 H 1.48503 * 109.47466 * 300.27725 * 14 12 10 17 17 H 1.48497 * 109.47176 * 60.27941 * 14 12 10 18 18 C 1.37877 * 119.91284 * 180.28287 * 2 1 3 19 19 H 1.09002 * 109.47061 * 89.99706 * 1 2 3 20 20 H 1.09000 * 109.47163 * 209.99732 * 1 2 3 21 21 H 1.08999 * 109.46777 * 330.00213 * 1 2 3 22 22 H 1.08001 * 119.84739 * 0.02562 * 3 2 1 23 23 H 1.08000 * 120.08327 * 180.02562 * 6 4 3 24 24 H 0.97001 * 119.99446 * 354.63633 * 13 12 10 25 25 H 1.08002 * 120.07073 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1999 0.0000 4 6 3.5829 1.2091 -0.0005 5 17 4.4392 2.7193 0.0001 6 6 4.2836 0.0200 -0.0005 7 6 3.5923 -1.1940 -0.0006 8 6 4.3357 -2.4717 -0.0012 9 8 3.7304 -3.5283 -0.0017 10 6 5.7537 -2.4670 -0.0022 11 1 6.2907 -1.5365 0.1088 12 6 6.4595 -3.6714 -0.1475 13 7 7.7615 -3.6801 -0.0561 14 14 5.5347 -5.2634 -0.4639 15 1 6.5023 -6.3848 -0.5715 16 1 4.5983 -5.5235 0.6590 17 1 4.7685 -5.1474 -1.7306 18 6 2.1946 -1.1951 -0.0059 19 1 -0.3633 0.0001 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5138 22 1 1.6538 2.1330 0.0004 23 1 5.3636 0.0280 -0.0005 24 1 8.2469 -2.8451 0.0344 25 1 1.6543 -2.1302 -0.0101 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088139628.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:25 Heat of formation + Delta-G solvation = -71.612223 kcal Electronic energy + Delta-G solvation = -12579.452375 eV Core-core repulsion = 10160.725100 eV Total energy + Delta-G solvation = -2418.727275 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.034 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.71661 -38.90671 -37.46223 -35.36851 -33.85986 -31.82558 -29.27199 -27.64455 -24.76429 -22.77299 -21.40832 -19.51579 -17.98446 -16.94087 -16.53905 -16.17359 -15.49905 -15.29927 -15.03953 -14.50910 -14.45461 -13.81497 -13.67612 -13.20286 -12.73084 -12.59555 -12.44567 -12.33504 -12.05293 -11.97948 -11.38493 -11.31954 -10.00520 -9.81935 -9.65557 -9.27294 -7.45904 -0.13741 0.18881 1.05350 1.30773 1.51480 1.91014 1.97179 2.36379 2.58938 3.31891 3.75144 3.77579 4.06774 4.23854 4.33637 4.46802 4.72405 4.85654 4.88074 5.11288 5.19796 5.32954 5.39177 5.45240 5.58942 5.81598 6.13091 6.36527 7.63075 7.83973 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.030491 B = 0.009095 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.094447 B = 3077.857659 C = 3970.538181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.079 4.079 3 C -0.100 4.100 4 C -0.043 4.043 5 Cl -0.065 7.065 6 C -0.098 4.098 7 C -0.124 4.124 8 C 0.371 3.629 9 O -0.605 6.605 10 C -0.579 4.579 11 H 0.077 0.923 12 C 0.026 3.974 13 N -0.806 5.806 14 Si 1.161 2.839 15 H -0.303 1.303 16 H -0.292 1.292 17 H -0.290 1.290 18 C -0.095 4.095 19 H 0.086 0.914 20 H 0.072 0.928 21 H 0.092 0.908 22 H 0.166 0.834 23 H 0.124 0.876 24 H 0.286 0.714 25 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.460 10.873 -0.365 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.080 4.080 3 C -0.119 4.119 4 C -0.070 4.070 5 Cl -0.036 7.036 6 C -0.117 4.117 7 C -0.125 4.125 8 C 0.277 3.723 9 O -0.507 6.507 10 C -0.609 4.609 11 H 0.095 0.905 12 C -0.194 4.194 13 N -0.432 5.432 14 Si 0.991 3.009 15 H -0.234 1.234 16 H -0.220 1.220 17 H -0.218 1.218 18 C -0.113 4.113 19 H 0.105 0.895 20 H 0.091 0.909 21 H 0.110 0.890 22 H 0.183 0.817 23 H 0.142 0.858 24 H 0.097 0.903 25 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.384 9.079 -0.518 13.803 hybrid contribution 0.732 1.962 0.264 2.110 sum -9.653 11.041 -0.254 14.668 Atomic orbital electron populations 1.20855 0.87323 1.04307 1.03824 1.20192 0.98379 0.91012 0.98400 1.21339 0.91003 0.99628 0.99902 1.20905 0.93262 0.86442 1.06371 1.98338 1.77611 1.30600 1.97067 1.21286 1.00462 0.90494 0.99425 1.20959 0.95088 0.95157 1.01290 1.18641 0.89667 0.86992 0.77006 1.89972 1.71270 1.32887 1.56618 1.22308 0.94430 0.97286 1.46855 0.90524 1.28293 0.95697 1.07010 0.88379 1.70564 1.08400 1.32711 1.31526 0.81931 0.71013 0.69827 0.78137 1.23387 1.22022 1.21764 1.21476 0.92740 0.99222 0.97896 0.89518 0.90905 0.88959 0.81690 0.85816 0.90271 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 10.01 71.24 0.71 -1.30 15 2 C -0.08 -2.26 5.87 -19.90 -0.12 -2.38 15 3 C -0.10 -2.71 9.48 22.39 0.21 -2.50 15 4 C -0.04 -1.40 6.31 22.29 0.14 -1.26 15 5 Cl -0.07 -1.81 28.95 -2.72 -0.08 -1.89 15 6 C -0.10 -3.92 9.22 22.57 0.21 -3.71 15 7 C -0.12 -5.56 5.88 -20.02 -0.12 -5.68 15 8 C 0.37 20.08 6.75 25.69 0.17 20.26 15 9 O -0.61 -34.74 11.92 -4.56 -0.05 -34.80 15 10 C -0.58 -32.37 9.27 23.67 0.22 -32.15 15 11 H 0.08 4.19 6.27 -2.91 -0.02 4.18 15 12 C 0.03 1.43 5.52 85.40 0.47 1.90 15 13 N -0.81 -44.44 13.64 21.89 0.30 -44.14 15 14 Si 1.16 58.89 25.97 68.60 1.78 60.67 15 15 H -0.30 -14.31 7.11 99.48 0.71 -13.60 15 16 H -0.29 -15.43 6.76 99.48 0.67 -14.76 15 17 H -0.29 -14.74 7.11 99.48 0.71 -14.03 15 18 C -0.09 -3.59 9.25 22.55 0.21 -3.38 15 19 H 0.09 1.42 8.14 -2.39 -0.02 1.40 15 20 H 0.07 1.36 8.08 -2.39 -0.02 1.34 15 21 H 0.09 1.28 8.08 -2.39 -0.02 1.26 15 22 H 0.17 3.20 8.06 -2.91 -0.02 3.18 15 23 H 0.12 5.20 6.22 -2.91 -0.02 5.18 15 24 H 0.29 15.10 8.72 -92.71 -0.81 14.30 15 25 H 0.13 4.88 7.65 -2.91 -0.02 4.86 15 Total: -1.00 -62.24 240.25 5.20 -57.05 By element: Atomic # 1 Polarization: -7.84 SS G_CDS: 1.14 Total: -6.70 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 2.11 Total: -30.20 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.30 Total: -44.14 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.05 Total: -34.80 kcal Atomic # 14 Polarization: 58.89 SS G_CDS: 1.78 Total: 60.67 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.08 Total: -1.89 kcal Total: -62.24 5.20 -57.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088139628.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.567 kcal (2) G-P(sol) polarization free energy of solvation -62.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds