Wall clock time and date at job start Mon Mar 30 2020 02:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38027 * 120.08227 * 2 1 4 4 Cl 1.73602 * 119.93946 * 359.97283 * 3 2 1 5 5 C 1.38541 * 120.12486 * 180.25062 * 3 2 1 6 6 C 1.38445 * 120.29801 * 359.44851 * 5 3 2 7 7 C 1.37872 * 120.16819 * 0.54871 * 6 5 3 8 8 C 1.39701 * 120.08221 * 179.97438 * 2 1 3 9 9 C 1.47819 * 120.14985 * 0.04515 * 8 2 1 10 10 O 1.21770 * 119.99955 * 5.98866 * 9 8 2 11 11 C 1.41803 * 120.00134 * 185.99166 * 9 8 2 12 12 H 1.08004 * 119.99691 * 359.97438 * 11 9 8 13 13 C 1.40347 * 120.00217 * 180.02562 * 11 9 8 14 14 N 1.30533 * 119.99940 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00262 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46784 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47350 * 119.99701 * 15 13 11 18 18 H 1.48498 * 109.47120 * 239.99992 * 15 13 11 19 19 H 1.09005 * 109.46685 * 96.62267 * 1 2 3 20 20 H 1.08988 * 109.47358 * 216.62187 * 1 2 3 21 21 H 1.09001 * 109.47193 * 336.62635 * 1 2 3 22 22 H 1.07997 * 119.85004 * 179.72218 * 5 3 2 23 23 H 1.07997 * 119.91950 * 180.28020 * 6 5 3 24 24 H 1.08000 * 120.07027 * 179.70444 * 7 6 5 25 25 H 0.97005 * 119.99885 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1989 1.1944 0.0000 4 17 1.3315 2.6981 -0.0007 5 6 3.5843 1.1954 -0.0052 6 6 4.2837 0.0006 0.0010 7 6 3.6050 -1.1995 0.0011 8 6 2.2073 -1.2088 0.0005 9 6 1.4734 -2.4920 0.0001 10 8 0.2608 -2.4998 -0.1107 11 6 2.1814 -3.7138 0.1288 12 1 3.2570 -3.7069 0.2268 13 6 1.4847 -4.9321 0.1279 14 7 0.1848 -4.9405 0.0090 15 14 2.4175 -6.5417 0.2968 16 1 3.8710 -6.2614 0.4150 17 1 1.9509 -7.2593 1.5103 18 1 2.1722 -7.3840 -0.9014 19 1 -0.3633 -0.1185 -1.0209 20 1 -0.3633 -0.8247 0.6130 21 1 -0.3633 0.9433 0.4077 22 1 4.1211 2.1325 -0.0098 23 1 5.3636 0.0086 0.0014 24 1 4.1522 -2.1306 0.0011 25 1 -0.2967 -5.7826 0.0080 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118000965.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:26 Heat of formation + Delta-G solvation = -49.200451 kcal Electronic energy + Delta-G solvation = -12782.791622 eV Core-core repulsion = 10365.036194 eV Total energy + Delta-G solvation = -2417.755428 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.034 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.56959 -38.31493 -37.24522 -34.89318 -33.37563 -32.05032 -28.98372 -27.63475 -24.51011 -22.69224 -21.32896 -18.65840 -17.77942 -16.66318 -16.49717 -16.05339 -15.31742 -15.19203 -14.83560 -14.09025 -13.88555 -13.36590 -13.29224 -12.99361 -12.76632 -12.67241 -12.54351 -12.23718 -12.15735 -11.94114 -11.54147 -10.99914 -9.63915 -9.53963 -9.42204 -8.31204 -7.06383 0.10821 0.33737 1.17451 1.37440 1.39770 1.57338 2.19312 2.21258 2.78367 3.69012 3.94081 3.96004 4.19250 4.33968 4.48659 4.76696 4.79503 4.84881 5.02431 5.18726 5.29710 5.37054 5.53328 5.69880 5.96033 6.00228 6.70684 6.78273 8.24700 8.48461 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.048737 B = 0.007943 C = 0.006862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.375936 B = 3524.265364 C = 4079.305365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.070 4.070 3 C -0.056 4.056 4 Cl -0.069 7.069 5 C -0.103 4.103 6 C -0.116 4.116 7 C -0.091 4.091 8 C -0.138 4.138 9 C 0.361 3.639 10 O -0.575 6.575 11 C -0.541 4.541 12 H 0.096 0.904 13 C 0.025 3.975 14 N -0.785 5.785 15 Si 0.994 3.006 16 H -0.242 1.242 17 H -0.267 1.267 18 H -0.267 1.267 19 H 0.054 0.946 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.163 0.837 23 H 0.171 0.829 24 H 0.140 0.860 25 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.756 7.598 0.517 11.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.071 4.071 3 C -0.083 4.083 4 Cl -0.040 7.040 5 C -0.121 4.121 6 C -0.133 4.133 7 C -0.109 4.109 8 C -0.139 4.139 9 C 0.261 3.739 10 O -0.469 6.469 11 C -0.571 4.571 12 H 0.114 0.886 13 C -0.194 4.194 14 N -0.415 5.415 15 Si 0.812 3.188 16 H -0.165 1.165 17 H -0.192 1.192 18 H -0.191 1.191 19 H 0.073 0.927 20 H 0.085 0.915 21 H 0.089 0.911 22 H 0.181 0.819 23 H 0.189 0.811 24 H 0.158 0.842 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.935 7.708 0.451 11.072 hybrid contribution -0.260 -0.633 -0.003 0.685 sum 7.675 7.075 0.448 10.448 Atomic orbital electron populations 1.20815 0.90946 1.02082 1.02099 1.20124 0.97116 0.91408 0.98462 1.20881 0.93289 0.85758 1.08344 1.98305 1.77430 1.31117 1.97117 1.21451 0.90757 1.00482 0.99434 1.21445 1.01637 0.90364 0.99901 1.21778 0.92598 0.99937 0.96589 1.21478 0.95791 0.95639 1.01031 1.18790 0.88388 0.87861 0.78908 1.90409 1.16885 1.88904 1.50662 1.21467 0.96615 0.92216 1.46846 0.88636 1.27221 0.95459 1.05351 0.91386 1.70096 1.10135 1.29571 1.31662 0.85021 0.79787 0.75204 0.78754 1.16490 1.19156 1.19127 0.92695 0.91454 0.91112 0.81944 0.81145 0.84248 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.61 8.44 71.24 0.60 -4.00 15 2 C -0.07 -3.04 5.92 -19.56 -0.12 -3.15 15 3 C -0.06 -1.96 6.31 22.29 0.14 -1.82 15 4 Cl -0.07 -2.05 27.17 -2.72 -0.07 -2.12 15 5 C -0.10 -2.92 9.83 22.39 0.22 -2.70 15 6 C -0.12 -3.28 10.03 22.23 0.22 -3.05 15 7 C -0.09 -3.40 9.43 22.55 0.21 -3.19 15 8 C -0.14 -6.50 5.88 -20.02 -0.12 -6.62 15 9 C 0.36 20.68 6.85 25.69 0.18 20.86 15 10 O -0.57 -36.84 11.89 -4.57 -0.05 -36.90 15 11 C -0.54 -29.37 8.85 23.67 0.21 -29.16 15 12 H 0.10 4.57 6.07 -2.91 -0.02 4.56 15 13 C 0.02 1.31 5.50 85.40 0.47 1.78 15 14 N -0.79 -45.57 11.73 21.89 0.26 -45.31 15 15 Si 0.99 38.27 29.56 68.60 2.03 40.30 15 16 H -0.24 -8.54 7.11 99.48 0.71 -7.84 15 17 H -0.27 -9.93 7.11 99.48 0.71 -9.22 15 18 H -0.27 -9.91 7.11 99.48 0.71 -9.20 15 19 H 0.05 2.51 8.14 -2.38 -0.02 2.49 15 20 H 0.07 3.51 5.85 -2.39 -0.01 3.49 15 21 H 0.07 2.69 6.63 -2.39 -0.02 2.68 15 22 H 0.16 3.35 8.06 -2.91 -0.02 3.33 15 23 H 0.17 3.25 8.06 -2.91 -0.02 3.23 15 24 H 0.14 4.94 6.25 -2.91 -0.02 4.92 15 25 H 0.28 14.60 8.29 -92.70 -0.77 13.83 15 Total: -1.00 -68.22 236.07 5.40 -62.82 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 1.22 Total: 12.26 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 2.02 Total: -31.05 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.26 Total: -45.31 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.05 Total: -36.90 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.07 Total: -2.12 kcal Total: -68.22 5.40 -62.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118000965.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.621 kcal (2) G-P(sol) polarization free energy of solvation -68.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds