Wall clock time and date at job start Mon Mar 30 2020 02:49:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.29374 * 1
3 3 Si 1.86792 * 120.00031 * 2 1
4 4 H 1.48501 * 109.47147 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.47215 * 299.99511 * 3 2 1
6 6 H 1.48505 * 109.47410 * 59.99648 * 3 2 1
7 7 C 1.46636 * 119.99684 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99833 * 180.02562 * 7 2 1
9 9 O 1.22308 * 119.99951 * 0.28048 * 7 2 1
10 10 C 1.35720 * 117.00197 * 174.59900 * 9 7 2
11 11 C 1.38803 * 120.02915 * 5.34895 * 10 9 7
12 12 C 1.38741 * 119.85251 * 179.72428 * 11 10 9
13 13 N 1.39671 * 120.03519 * 180.30049 * 12 11 10
14 14 C 1.39017 * 119.92330 * 0.54808 * 12 11 10
15 15 C 1.38153 * 120.06764 * 359.72317 * 14 12 11
16 16 N 1.48009 * 119.92857 * 180.02562 * 15 14 12
17 17 O 1.31702 * 120.00210 * 179.97438 * 16 15 14
18 18 O 1.31701 * 120.00203 * 359.97438 * 16 15 14
19 19 C 1.38162 * 120.14453 * 0.02562 * 15 14 12
20 20 H 0.96999 * 119.99581 * 0.02562 * 1 2 3
21 21 H 1.08000 * 120.07131 * 359.97438 * 11 10 9
22 22 H 0.97006 * 119.99848 * 180.25518 * 13 12 11
23 23 H 0.97001 * 120.00407 * 0.24437 * 13 12 11
24 24 H 1.07997 * 119.96600 * 179.74646 * 14 12 11
25 25 H 1.08001 * 119.96310 * 180.02562 * 19 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.2937 0.0000 0.0000
3 14 2.2277 1.6177 0.0000
4 1 3.6877 1.3463 0.0006
5 1 1.8691 2.3963 -1.2125
6 1 1.8689 2.3965 1.2125
7 6 2.0269 -1.2699 0.0006
8 1 3.1068 -1.2700 0.0010
9 8 1.4153 -2.3291 -0.0041
10 6 2.1502 -3.4645 -0.1171
11 6 3.5366 -3.3983 -0.1090
12 6 4.2842 -4.5618 -0.2189
13 7 5.6795 -4.5002 -0.2048
14 6 3.6431 -5.7885 -0.3483
15 6 2.2630 -5.8501 -0.3617
16 7 1.5835 -7.1579 -0.4991
17 8 0.2679 -7.2184 -0.5115
18 8 2.2944 -8.2611 -0.6089
19 6 1.5156 -4.6938 -0.2472
20 1 -0.4849 0.8401 -0.0004
21 1 4.0322 -2.4435 -0.0132
22 1 6.2018 -5.3137 -0.2855
23 1 6.1263 -3.6440 -0.1146
24 1 4.2244 -6.6942 -0.4381
25 1 0.4369 -4.7454 -0.2576
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000137963877.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:41
Heat of formation + Delta-G solvation = 30.734848 kcal
Electronic energy + Delta-G solvation = -14582.010411 eV
Core-core repulsion = 11759.304825 eV
Total energy + Delta-G solvation = -2822.705587 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 224.063 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-42.28430 -40.49532 -38.95993 -35.65942 -35.35174 -34.68733 -31.74606 -29.94166
-27.93495 -26.94735 -23.42336 -23.13292 -20.82822 -19.88699 -19.11226 -18.30480
-17.32715 -17.11118 -17.00529 -16.54525 -16.39931 -16.03195 -15.77311 -14.53933
-13.93502 -13.91329 -13.28575 -12.89581 -12.84173 -12.46512 -12.27565 -12.08332
-11.88912 -11.78398 -11.40012 -11.05315 -9.72479 -8.83274 -8.68936 -5.82693
-1.74168 0.11648 0.34833 0.51388 1.36313 1.44288 1.54607 2.07624
2.44628 2.86951 2.92564 3.07398 4.01306 4.06428 4.15829 4.21659
4.37509 4.73012 4.83491 4.95967 5.18207 5.24464 5.54721 5.75040
5.79053 6.46434 6.52429 7.01959 7.86601 8.39286
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.035779 B = 0.007541 C = 0.006248
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 782.384888 B = 3712.263122 C = 4480.639403
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.854 5.854
2 C -0.006 4.006
3 Si 1.024 2.976
4 H -0.243 1.243
5 H -0.265 1.265
6 H -0.264 1.264
7 C -0.432 4.432
8 H 0.110 0.890
9 O -0.132 6.132
10 C 0.115 3.885
11 C -0.289 4.289
12 C 0.288 3.712
13 N -0.850 5.850
14 C -0.249 4.249
15 C 0.077 3.923
16 N -0.007 5.007
17 O -0.231 6.231
18 O -0.166 6.166
19 C -0.176 4.176
20 H 0.296 0.704
21 H 0.146 0.854
22 H 0.413 0.587
23 H 0.412 0.588
24 H 0.156 0.844
25 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.321 -0.488 -0.084 11.331
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.483 5.483
2 C -0.216 4.216
3 Si 0.841 3.159
4 H -0.166 1.166
5 H -0.190 1.190
6 H -0.189 1.189
7 C -0.508 4.508
8 H 0.127 0.873
9 O -0.029 6.029
10 C 0.058 3.942
11 C -0.315 4.315
12 C 0.179 3.821
13 N -0.391 5.391
14 C -0.275 4.275
15 C -0.010 4.010
16 N 0.467 4.533
17 O -0.412 6.412
18 O -0.366 6.366
19 C -0.199 4.199
20 H 0.108 0.892
21 H 0.163 0.837
22 H 0.244 0.756
23 H 0.243 0.757
24 H 0.174 0.826
25 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 10.991 0.321 0.004 10.996
hybrid contribution -0.153 0.139 -0.013 0.208
sum 10.838 0.460 -0.010 10.848
Atomic orbital electron populations
1.69009 1.09984 1.31757 1.37542 1.28312 0.96148 1.02382 0.94787
0.84449 0.79058 0.73371 0.79005 1.16551 1.18952 1.18909 1.21552
0.94202 0.82568 1.52522 0.87339 1.80327 1.38080 1.12689 1.71765
1.18716 0.90405 0.85949 0.99159 1.20522 0.92316 0.99012 1.19645
1.16826 0.85573 0.90476 0.89183 1.42276 1.00921 1.13194 1.82688
1.19802 0.90112 0.98970 1.18566 1.19459 0.92230 0.78389 1.10946
1.50663 1.02815 1.04775 0.95082 1.96252 0.89883 1.95917 1.59171
1.96151 1.64221 1.22195 1.54042 1.19545 1.00448 0.88982 1.10897
0.89195 0.83657 0.75646 0.75720 0.82637 0.85510
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -44.59 13.66 23.22 0.32 -44.27 15
2 C -0.01 -0.29 5.69 87.25 0.50 0.21 15
3 Si 1.02 35.10 29.64 68.60 2.03 37.13 15
4 H -0.24 -7.57 7.11 99.48 0.71 -6.86 15
5 H -0.26 -8.77 7.11 99.48 0.71 -8.06 15
6 H -0.26 -8.73 7.11 99.48 0.71 -8.02 15
7 C -0.43 -21.49 9.47 70.01 0.66 -20.83 15
8 H 0.11 4.82 5.02 -2.91 -0.01 4.81 15
9 O -0.13 -7.00 9.28 52.23 0.48 -6.52 15
10 C 0.11 5.25 6.59 22.57 0.15 5.40 15
11 C -0.29 -10.93 8.97 22.53 0.20 -10.72 15
12 C 0.29 9.00 6.75 38.20 0.26 9.26 15
13 N -0.85 -17.25 9.09 -51.41 -0.47 -17.72 15
14 C -0.25 -8.43 9.42 22.44 0.21 -8.21 15
15 C 0.08 3.11 6.88 36.34 0.25 3.36 15
16 N -0.01 -0.30 4.98 -46.56 -0.23 -0.53 15
17 O -0.23 -10.38 19.14 3.51 0.07 -10.31 15
18 O -0.17 -6.53 19.14 3.51 0.07 -6.46 15
19 C -0.18 -7.84 9.52 22.42 0.21 -7.63 15
20 H 0.30 13.74 8.26 -92.71 -0.77 12.97 15
21 H 0.15 5.16 5.68 -2.91 -0.02 5.14 15
22 H 0.41 6.17 8.84 -92.70 -0.82 5.35 15
23 H 0.41 6.76 8.84 -92.71 -0.82 5.94 15
24 H 0.16 4.49 7.57 -2.91 -0.02 4.47 15
25 H 0.13 5.89 7.57 -2.91 -0.02 5.87 15
Total: -1.00 -60.61 241.34 4.35 -56.26
By element:
Atomic # 1 Polarization: 21.95 SS G_CDS: -0.36 Total: 21.59 kcal
Atomic # 6 Polarization: -31.60 SS G_CDS: 2.44 Total: -29.16 kcal
Atomic # 7 Polarization: -62.15 SS G_CDS: -0.38 Total: -62.53 kcal
Atomic # 8 Polarization: -23.91 SS G_CDS: 0.62 Total: -23.29 kcal
Atomic # 14 Polarization: 35.10 SS G_CDS: 2.03 Total: 37.13 kcal
Total: -60.61 4.35 -56.26 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000137963877.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.992 kcal
(2) G-P(sol) polarization free energy of solvation -60.611 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.381 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.257 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.735 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds