Wall clock time and date at job start Mon Mar 30 2020 02:46:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30892 * 1
3 3 Si 1.86800 * 120.00449 * 2 1
4 4 H 1.48500 * 109.46589 * 0.02562 * 3 2 1
5 5 H 1.48492 * 109.47150 * 119.99982 * 3 2 1
6 6 H 1.48498 * 109.47132 * 240.00239 * 3 2 1
7 7 C 1.39874 * 119.99598 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00066 * 155.03674 * 7 2 1
9 9 C 1.41196 * 120.00196 * 335.04282 * 7 2 1
10 10 C 1.40822 * 120.17770 * 333.44874 * 9 7 2
11 11 C 1.37747 * 119.69727 * 179.72375 * 10 9 7
12 12 C 1.40018 * 119.97843 * 0.56513 * 11 10 9
13 13 C 1.39152 * 120.19192 * 359.70115 * 12 11 10
14 14 C 1.36466 * 120.44168 * 0.02562 * 13 12 11
15 15 C 1.50699 * 119.97923 * 179.97438 * 14 13 12
16 16 F 1.39895 * 109.47093 * 270.01853 * 15 14 13
17 17 O 1.36324 * 108.48611 * 179.67458 * 12 11 10
18 18 C 1.43956 * 105.56539 * 17.37922 * 17 12 11
19 19 O 1.36491 * 131.47838 * 180.17291 * 11 10 9
20 20 H 0.96997 * 120.00286 * 174.21318 * 1 2 3
21 21 H 1.08000 * 120.14847 * 359.97438 * 10 9 7
22 22 H 1.07997 * 119.78284 * 179.97438 * 13 12 11
23 23 H 1.09005 * 109.47196 * 30.01980 * 15 14 13
24 24 H 1.09000 * 109.47561 * 150.01804 * 15 14 13
25 25 H 1.08991 * 110.55272 * 91.26383 * 18 17 12
26 26 H 1.09006 * 110.55003 * 214.08505 * 18 17 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3089 0.0000 0.0000
3 14 2.2431 1.6177 0.0000
4 1 1.2780 2.7464 0.0006
5 1 3.0968 1.6963 1.2124
6 1 3.0968 1.6963 -1.2125
7 6 2.0082 -1.2114 -0.0005
8 1 3.0126 -1.2550 -0.3953
9 6 1.4011 -2.3773 0.5149
10 6 0.3965 -2.2774 1.4967
11 6 -0.1932 -3.4210 1.9885
12 6 0.2156 -4.6758 1.5204
13 6 1.2124 -4.7716 0.5542
14 6 1.8011 -3.6465 0.0543
15 6 2.8801 -3.7624 -0.9914
16 9 4.1278 -3.8551 -0.3656
17 8 -0.5098 -5.6343 2.1634
18 6 -1.6454 -4.9490 2.7230
19 8 -1.1724 -3.6038 2.9216
20 1 -0.4850 -0.8357 -0.0847
21 1 0.0870 -1.3084 1.8594
22 1 1.5228 -5.7428 0.1982
23 1 2.7083 -4.6547 -1.5934
24 1 2.8601 -2.8817 -1.6333
25 1 -2.4820 -4.9612 2.0245
26 1 -1.9328 -5.3978 3.6739
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000214709086.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:46:03
Heat of formation + Delta-G solvation = -108.072191 kcal
Electronic energy + Delta-G solvation = -15132.538839 eV
Core-core repulsion = 12283.894166 eV
Total energy + Delta-G solvation = -2848.644673 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 224.064 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-46.73470 -41.00475 -37.23812 -35.31097 -33.79617 -30.47474 -29.27798 -25.86376
-25.80114 -23.78795 -21.57138 -20.79198 -18.44512 -16.75849 -16.59322 -16.25713
-15.27662 -14.93623 -14.76608 -14.16806 -13.86195 -13.76934 -13.15081 -12.72914
-12.40350 -12.16913 -12.02533 -11.50104 -11.28176 -10.83407 -10.48998 -10.35759
-9.97829 -9.83406 -9.61046 -9.08168 -7.83602 -7.49875 -7.09294 -4.66405
2.34924 2.50455 3.08249 3.14712 3.30082 3.73788 3.89893 4.32311
4.35697 5.09449 5.29626 5.46031 5.57052 5.68917 5.80881 5.90712
6.22166 6.33441 6.59252 6.74622 6.87744 7.20175 7.30119 7.39335
7.53665 7.71881 7.85987 8.13249 8.47313 8.60613 9.83934
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.025905 B = 0.011263 C = 0.008214
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1080.622490 B = 2485.360524 C = 3408.139173
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.782 5.782
2 C 0.038 3.962
3 Si 1.067 2.933
4 H -0.272 1.272
5 H -0.272 1.272
6 H -0.273 1.273
7 C -0.503 4.503
8 H 0.088 0.912
9 C 0.126 3.874
10 C -0.204 4.204
11 C 0.079 3.921
12 C -0.128 4.128
13 C -0.024 4.024
14 C -0.252 4.252
15 C 0.132 3.868
16 F -0.228 7.228
17 O -0.323 6.323
18 C 0.217 3.783
19 O -0.325 6.325
20 H 0.301 0.699
21 H 0.119 0.881
22 H 0.104 0.896
23 H 0.058 0.942
24 H 0.081 0.919
25 H 0.065 0.935
26 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.164 -2.883 -0.668 2.964
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.404 5.404
2 C -0.186 4.186
3 Si 0.889 3.111
4 H -0.197 1.197
5 H -0.197 1.197
6 H -0.198 1.198
7 C -0.530 4.530
8 H 0.106 0.894
9 C 0.122 3.878
10 C -0.224 4.224
11 C 0.035 3.965
12 C -0.171 4.171
13 C -0.043 4.043
14 C -0.254 4.254
15 C 0.078 3.922
16 F -0.209 7.209
17 O -0.241 6.241
18 C 0.104 3.896
19 O -0.241 6.241
20 H 0.115 0.885
21 H 0.137 0.863
22 H 0.122 0.878
23 H 0.077 0.923
24 H 0.099 0.901
25 H 0.082 0.918
26 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -0.456 -1.328 -0.414 1.464
hybrid contribution -0.152 -1.911 0.186 1.926
sum -0.607 -3.239 -0.227 3.303
Atomic orbital electron populations
1.70493 1.08232 1.34555 1.27144 1.27174 0.95608 1.04658 0.91151
0.83603 0.75677 0.73454 0.78348 1.19690 1.19703 1.19802 1.20588
1.03009 0.93456 1.35950 0.89434 1.17149 0.89301 0.92263 0.89088
1.20115 1.05114 0.94695 1.02443 1.19701 0.91621 0.95253 0.89958
1.19150 1.06251 0.85162 1.06543 1.19080 0.94318 0.97614 0.93307
1.19357 1.06359 0.92957 1.06752 1.20368 0.77110 1.01896 0.92847
1.92725 1.44963 1.97797 1.85396 1.87084 1.35942 1.32108 1.68940
1.25195 0.89286 0.76669 0.98470 1.87225 1.51896 1.31961 1.53047
0.88528 0.86270 0.87752 0.92338 0.90077 0.91775 0.87057
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -19.73 12.35 55.54 0.69 -19.05 15
2 C 0.04 0.90 4.94 -17.34 -0.09 0.81 15
3 Si 1.07 20.41 30.00 -169.99 -5.10 15.31 15
4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 15
5 H -0.27 -5.11 7.11 56.52 0.40 -4.70 15
6 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15
7 C -0.50 -12.50 8.03 -37.85 -0.30 -12.80 15
8 H 0.09 2.11 6.94 -52.48 -0.36 1.74 15
9 C 0.13 3.19 5.28 -106.82 -0.56 2.63 15
10 C -0.20 -5.24 7.95 -38.78 -0.31 -5.55 15
11 C 0.08 1.94 7.13 -39.09 -0.28 1.66 15
12 C -0.13 -3.05 7.18 -38.58 -0.28 -3.32 15
13 C -0.02 -0.55 9.62 -39.88 -0.38 -0.94 15
14 C -0.25 -5.90 5.62 -104.29 -0.59 -6.49 15
15 C 0.13 2.66 7.05 36.00 0.25 2.91 15
16 F -0.23 -4.89 17.34 2.25 0.04 -4.85 15
17 O -0.32 -6.96 11.39 -45.10 -0.51 -7.47 15
18 C 0.22 3.90 8.88 101.05 0.90 4.80 15
19 O -0.32 -7.26 11.40 -45.65 -0.52 -7.78 15
20 H 0.30 7.81 6.70 -40.82 -0.27 7.54 15
21 H 0.12 3.15 6.56 -52.49 -0.34 2.81 15
22 H 0.10 2.09 8.06 -52.49 -0.42 1.67 15
23 H 0.06 0.99 8.08 -51.93 -0.42 0.57 15
24 H 0.08 1.59 6.77 -51.93 -0.35 1.24 15
25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15
26 H 0.11 1.55 8.14 -51.93 -0.42 1.12 15
LS Contribution 234.85 15.07 3.54 3.54
Total: -1.00 -27.97 234.85 -5.32 -33.30
By element:
Atomic # 1 Polarization: 5.11 SS G_CDS: -1.82 Total: 3.29 kcal
Atomic # 6 Polarization: -14.65 SS G_CDS: -1.64 Total: -16.29 kcal
Atomic # 7 Polarization: -19.73 SS G_CDS: 0.69 Total: -19.05 kcal
Atomic # 8 Polarization: -14.22 SS G_CDS: -1.03 Total: -15.25 kcal
Atomic # 9 Polarization: -4.89 SS G_CDS: 0.04 Total: -4.85 kcal
Atomic # 14 Polarization: 20.41 SS G_CDS: -5.10 Total: 15.31 kcal
Total LS contribution 3.54 Total: 3.54 kcal
Total: -27.97 -5.32 -33.30 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000214709086.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -74.777 kcal
(2) G-P(sol) polarization free energy of solvation -27.973 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.750 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.322 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.295 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.072 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds