Wall clock time and date at job start Mon Mar 30 2020 02:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86800 * 120.00449 * 2 1 4 4 H 1.48500 * 109.46589 * 0.02562 * 3 2 1 5 5 H 1.48492 * 109.47150 * 119.99982 * 3 2 1 6 6 H 1.48498 * 109.47132 * 240.00239 * 3 2 1 7 7 C 1.39874 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00066 * 155.03674 * 7 2 1 9 9 C 1.41196 * 120.00196 * 335.04282 * 7 2 1 10 10 C 1.40822 * 120.17770 * 333.44874 * 9 7 2 11 11 C 1.37747 * 119.69727 * 179.72375 * 10 9 7 12 12 C 1.40018 * 119.97843 * 0.56513 * 11 10 9 13 13 C 1.39152 * 120.19192 * 359.70115 * 12 11 10 14 14 C 1.36466 * 120.44168 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.97923 * 179.97438 * 14 13 12 16 16 F 1.39895 * 109.47093 * 270.01853 * 15 14 13 17 17 O 1.36324 * 108.48611 * 179.67458 * 12 11 10 18 18 C 1.43956 * 105.56539 * 17.37922 * 17 12 11 19 19 O 1.36491 * 131.47838 * 180.17291 * 11 10 9 20 20 H 0.96997 * 120.00286 * 174.21318 * 1 2 3 21 21 H 1.08000 * 120.14847 * 359.97438 * 10 9 7 22 22 H 1.07997 * 119.78284 * 179.97438 * 13 12 11 23 23 H 1.09005 * 109.47196 * 30.01980 * 15 14 13 24 24 H 1.09000 * 109.47561 * 150.01804 * 15 14 13 25 25 H 1.08991 * 110.55272 * 91.26383 * 18 17 12 26 26 H 1.09006 * 110.55003 * 214.08505 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 1.2780 2.7464 0.0006 5 1 3.0968 1.6963 1.2124 6 1 3.0968 1.6963 -1.2125 7 6 2.0082 -1.2114 -0.0005 8 1 3.0126 -1.2550 -0.3953 9 6 1.4011 -2.3773 0.5149 10 6 0.3965 -2.2774 1.4967 11 6 -0.1932 -3.4210 1.9885 12 6 0.2156 -4.6758 1.5204 13 6 1.2124 -4.7716 0.5542 14 6 1.8011 -3.6465 0.0543 15 6 2.8801 -3.7624 -0.9914 16 9 4.1278 -3.8551 -0.3656 17 8 -0.5098 -5.6343 2.1634 18 6 -1.6454 -4.9490 2.7230 19 8 -1.1724 -3.6038 2.9216 20 1 -0.4850 -0.8357 -0.0847 21 1 0.0870 -1.3084 1.8594 22 1 1.5228 -5.7428 0.1982 23 1 2.7083 -4.6547 -1.5934 24 1 2.8601 -2.8817 -1.6333 25 1 -2.4820 -4.9612 2.0245 26 1 -1.9328 -5.3978 3.6739 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214709086.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:03 Heat of formation + Delta-G solvation = -108.072191 kcal Electronic energy + Delta-G solvation = -15132.538839 eV Core-core repulsion = 12283.894166 eV Total energy + Delta-G solvation = -2848.644673 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.73470 -41.00475 -37.23812 -35.31097 -33.79617 -30.47474 -29.27798 -25.86376 -25.80114 -23.78795 -21.57138 -20.79198 -18.44512 -16.75849 -16.59322 -16.25713 -15.27662 -14.93623 -14.76608 -14.16806 -13.86195 -13.76934 -13.15081 -12.72914 -12.40350 -12.16913 -12.02533 -11.50104 -11.28176 -10.83407 -10.48998 -10.35759 -9.97829 -9.83406 -9.61046 -9.08168 -7.83602 -7.49875 -7.09294 -4.66405 2.34924 2.50455 3.08249 3.14712 3.30082 3.73788 3.89893 4.32311 4.35697 5.09449 5.29626 5.46031 5.57052 5.68917 5.80881 5.90712 6.22166 6.33441 6.59252 6.74622 6.87744 7.20175 7.30119 7.39335 7.53665 7.71881 7.85987 8.13249 8.47313 8.60613 9.83934 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.011263 C = 0.008214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.622490 B = 2485.360524 C = 3408.139173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.038 3.962 3 Si 1.067 2.933 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.503 4.503 8 H 0.088 0.912 9 C 0.126 3.874 10 C -0.204 4.204 11 C 0.079 3.921 12 C -0.128 4.128 13 C -0.024 4.024 14 C -0.252 4.252 15 C 0.132 3.868 16 F -0.228 7.228 17 O -0.323 6.323 18 C 0.217 3.783 19 O -0.325 6.325 20 H 0.301 0.699 21 H 0.119 0.881 22 H 0.104 0.896 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 -2.883 -0.668 2.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.186 4.186 3 Si 0.889 3.111 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.530 4.530 8 H 0.106 0.894 9 C 0.122 3.878 10 C -0.224 4.224 11 C 0.035 3.965 12 C -0.171 4.171 13 C -0.043 4.043 14 C -0.254 4.254 15 C 0.078 3.922 16 F -0.209 7.209 17 O -0.241 6.241 18 C 0.104 3.896 19 O -0.241 6.241 20 H 0.115 0.885 21 H 0.137 0.863 22 H 0.122 0.878 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.456 -1.328 -0.414 1.464 hybrid contribution -0.152 -1.911 0.186 1.926 sum -0.607 -3.239 -0.227 3.303 Atomic orbital electron populations 1.70493 1.08232 1.34555 1.27144 1.27174 0.95608 1.04658 0.91151 0.83603 0.75677 0.73454 0.78348 1.19690 1.19703 1.19802 1.20588 1.03009 0.93456 1.35950 0.89434 1.17149 0.89301 0.92263 0.89088 1.20115 1.05114 0.94695 1.02443 1.19701 0.91621 0.95253 0.89958 1.19150 1.06251 0.85162 1.06543 1.19080 0.94318 0.97614 0.93307 1.19357 1.06359 0.92957 1.06752 1.20368 0.77110 1.01896 0.92847 1.92725 1.44963 1.97797 1.85396 1.87084 1.35942 1.32108 1.68940 1.25195 0.89286 0.76669 0.98470 1.87225 1.51896 1.31961 1.53047 0.88528 0.86270 0.87752 0.92338 0.90077 0.91775 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.73 12.35 55.54 0.69 -19.05 15 2 C 0.04 0.90 4.94 -17.34 -0.09 0.81 15 3 Si 1.07 20.41 30.00 -169.99 -5.10 15.31 15 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 15 5 H -0.27 -5.11 7.11 56.52 0.40 -4.70 15 6 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 7 C -0.50 -12.50 8.03 -37.85 -0.30 -12.80 15 8 H 0.09 2.11 6.94 -52.48 -0.36 1.74 15 9 C 0.13 3.19 5.28 -106.82 -0.56 2.63 15 10 C -0.20 -5.24 7.95 -38.78 -0.31 -5.55 15 11 C 0.08 1.94 7.13 -39.09 -0.28 1.66 15 12 C -0.13 -3.05 7.18 -38.58 -0.28 -3.32 15 13 C -0.02 -0.55 9.62 -39.88 -0.38 -0.94 15 14 C -0.25 -5.90 5.62 -104.29 -0.59 -6.49 15 15 C 0.13 2.66 7.05 36.00 0.25 2.91 15 16 F -0.23 -4.89 17.34 2.25 0.04 -4.85 15 17 O -0.32 -6.96 11.39 -45.10 -0.51 -7.47 15 18 C 0.22 3.90 8.88 101.05 0.90 4.80 15 19 O -0.32 -7.26 11.40 -45.65 -0.52 -7.78 15 20 H 0.30 7.81 6.70 -40.82 -0.27 7.54 15 21 H 0.12 3.15 6.56 -52.49 -0.34 2.81 15 22 H 0.10 2.09 8.06 -52.49 -0.42 1.67 15 23 H 0.06 0.99 8.08 -51.93 -0.42 0.57 15 24 H 0.08 1.59 6.77 -51.93 -0.35 1.24 15 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.11 1.55 8.14 -51.93 -0.42 1.12 15 LS Contribution 234.85 15.07 3.54 3.54 Total: -1.00 -27.97 234.85 -5.32 -33.30 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -1.82 Total: 3.29 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -1.64 Total: -16.29 kcal Atomic # 7 Polarization: -19.73 SS G_CDS: 0.69 Total: -19.05 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -1.03 Total: -15.25 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.04 Total: -4.85 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.10 Total: 15.31 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -27.97 -5.32 -33.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214709086.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.777 kcal (2) G-P(sol) polarization free energy of solvation -27.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds