Wall clock time and date at job start Mon Mar 30 2020 02:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86800 * 120.00449 * 2 1 4 4 H 1.48500 * 109.46589 * 0.02562 * 3 2 1 5 5 H 1.48492 * 109.47150 * 119.99982 * 3 2 1 6 6 H 1.48498 * 109.47132 * 240.00239 * 3 2 1 7 7 C 1.39874 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00066 * 155.03674 * 7 2 1 9 9 C 1.41196 * 120.00196 * 335.04282 * 7 2 1 10 10 C 1.40822 * 120.17770 * 333.44874 * 9 7 2 11 11 C 1.37747 * 119.69727 * 179.72375 * 10 9 7 12 12 C 1.40018 * 119.97843 * 0.56513 * 11 10 9 13 13 C 1.39152 * 120.19192 * 359.70115 * 12 11 10 14 14 C 1.36466 * 120.44168 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.97923 * 179.97438 * 14 13 12 16 16 F 1.39895 * 109.47093 * 270.01853 * 15 14 13 17 17 O 1.36324 * 108.48611 * 179.67458 * 12 11 10 18 18 C 1.43956 * 105.56539 * 17.37922 * 17 12 11 19 19 O 1.36491 * 131.47838 * 180.17291 * 11 10 9 20 20 H 0.96997 * 120.00286 * 174.21318 * 1 2 3 21 21 H 1.08000 * 120.14847 * 359.97438 * 10 9 7 22 22 H 1.07997 * 119.78284 * 179.97438 * 13 12 11 23 23 H 1.09005 * 109.47196 * 30.01980 * 15 14 13 24 24 H 1.09000 * 109.47561 * 150.01804 * 15 14 13 25 25 H 1.08991 * 110.55272 * 91.26383 * 18 17 12 26 26 H 1.09006 * 110.55003 * 214.08505 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 1.2780 2.7464 0.0006 5 1 3.0968 1.6963 1.2124 6 1 3.0968 1.6963 -1.2125 7 6 2.0082 -1.2114 -0.0005 8 1 3.0126 -1.2550 -0.3953 9 6 1.4011 -2.3773 0.5149 10 6 0.3965 -2.2774 1.4967 11 6 -0.1932 -3.4210 1.9885 12 6 0.2156 -4.6758 1.5204 13 6 1.2124 -4.7716 0.5542 14 6 1.8011 -3.6465 0.0543 15 6 2.8801 -3.7624 -0.9914 16 9 4.1278 -3.8551 -0.3656 17 8 -0.5098 -5.6343 2.1634 18 6 -1.6454 -4.9490 2.7230 19 8 -1.1724 -3.6038 2.9216 20 1 -0.4850 -0.8357 -0.0847 21 1 0.0870 -1.3084 1.8594 22 1 1.5228 -5.7428 0.1982 23 1 2.7083 -4.6547 -1.5934 24 1 2.8601 -2.8817 -1.6333 25 1 -2.4820 -4.9612 2.0245 26 1 -1.9328 -5.3978 3.6739 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214709086.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:02 Heat of formation + Delta-G solvation = -124.510603 kcal Electronic energy + Delta-G solvation = -15133.251662 eV Core-core repulsion = 12283.894166 eV Total energy + Delta-G solvation = -2849.357496 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.38804 -42.71798 -39.04469 -37.02436 -35.61084 -32.24220 -31.11333 -27.60810 -27.41234 -25.50387 -23.40316 -22.56365 -20.24505 -18.46964 -18.24892 -18.00931 -16.98196 -16.57207 -16.36660 -15.77472 -15.53328 -15.52405 -14.89639 -14.55630 -14.18426 -13.92181 -13.73935 -13.18674 -12.89719 -12.51412 -12.01738 -11.94070 -11.68446 -11.53278 -11.35791 -10.85567 -9.70196 -9.38233 -8.91983 -6.56787 0.49626 0.65130 1.53068 1.60136 1.82381 2.06785 2.30911 2.52790 2.81851 3.22987 3.84620 3.93593 4.04411 4.09754 4.17457 4.30760 4.49958 4.58473 4.90444 4.98989 5.05525 5.33951 5.46348 5.53334 5.66497 5.83494 5.98718 6.29931 6.62169 6.76279 7.93170 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.011263 C = 0.008214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.622490 B = 2485.360524 C = 3408.139173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.006 3.994 3 Si 1.115 2.885 4 H -0.273 1.273 5 H -0.267 1.267 6 H -0.249 1.249 7 C -0.524 4.524 8 H 0.091 0.909 9 C 0.102 3.898 10 C -0.229 4.229 11 C 0.066 3.934 12 C -0.133 4.133 13 C -0.029 4.029 14 C -0.258 4.258 15 C 0.133 3.867 16 F -0.235 7.235 17 O -0.329 6.329 18 C 0.207 3.793 19 O -0.340 6.340 20 H 0.286 0.714 21 H 0.099 0.901 22 H 0.136 0.864 23 H 0.098 0.902 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.296 -3.688 -1.007 3.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.213 4.213 3 Si 0.931 3.069 4 H -0.197 1.197 5 H -0.191 1.191 6 H -0.173 1.173 7 C -0.551 4.551 8 H 0.109 0.891 9 C 0.099 3.901 10 C -0.249 4.249 11 C 0.021 3.979 12 C -0.176 4.176 13 C -0.048 4.048 14 C -0.260 4.260 15 C 0.079 3.921 16 F -0.216 7.216 17 O -0.247 6.247 18 C 0.096 3.904 19 O -0.257 6.257 20 H 0.098 0.902 21 H 0.117 0.883 22 H 0.153 0.847 23 H 0.116 0.884 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.006 -2.167 -0.754 2.295 hybrid contribution -0.388 -1.807 0.357 1.882 sum -0.394 -3.974 -0.397 4.013 Atomic orbital electron populations 1.70594 1.09070 1.33562 1.29264 1.28518 0.95546 1.07664 0.89541 0.83025 0.74806 0.69597 0.79431 1.19728 1.19146 1.17317 1.20774 1.03288 0.94102 1.36906 0.89057 1.17502 0.89623 0.93658 0.89350 1.20056 1.06638 0.94386 1.03818 1.19844 0.92177 0.95478 0.90366 1.19423 1.06396 0.85241 1.06518 1.19452 0.93661 0.98833 0.92815 1.19799 1.06804 0.92375 1.07041 1.20499 0.75629 1.03996 0.91953 1.92706 1.45334 1.97912 1.85645 1.87056 1.36847 1.32004 1.68783 1.25847 0.88477 0.74701 1.01413 1.87191 1.51533 1.34428 1.52559 0.90164 0.88313 0.84660 0.88387 0.89904 0.89430 0.82438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.61 12.35 21.82 0.27 -41.35 15 2 C 0.01 0.27 4.94 85.23 0.42 0.69 15 3 Si 1.11 40.72 30.00 68.60 2.06 42.78 15 4 H -0.27 -9.90 7.11 99.48 0.71 -9.19 15 5 H -0.27 -9.45 7.11 99.48 0.71 -8.74 15 6 H -0.25 -8.13 7.11 99.48 0.71 -7.43 15 7 C -0.52 -26.28 8.03 23.39 0.19 -26.09 15 8 H 0.09 4.39 6.94 -2.91 -0.02 4.37 15 9 C 0.10 5.26 5.28 -21.29 -0.11 5.14 15 10 C -0.23 -12.14 7.95 22.79 0.18 -11.96 15 11 C 0.07 3.26 7.13 22.59 0.16 3.42 15 12 C -0.13 -6.16 7.18 22.92 0.16 -5.99 15 13 C -0.03 -1.27 9.62 22.08 0.21 -1.06 15 14 C -0.26 -11.85 5.62 -19.65 -0.11 -11.96 15 15 C 0.13 5.09 7.05 71.24 0.50 5.59 15 16 F -0.23 -9.64 17.34 44.97 0.78 -8.86 15 17 O -0.33 -13.47 11.39 -74.00 -0.84 -14.31 15 18 C 0.21 6.95 8.88 113.37 1.01 7.96 15 19 O -0.34 -15.04 11.40 -75.95 -0.87 -15.91 15 20 H 0.29 15.49 6.70 -92.71 -0.62 14.87 15 21 H 0.10 5.50 6.56 -2.91 -0.02 5.49 15 22 H 0.14 4.99 8.06 -2.91 -0.02 4.97 15 23 H 0.10 2.98 8.08 -2.38 -0.02 2.96 15 24 H 0.08 3.13 6.77 -2.39 -0.02 3.11 15 25 H 0.09 2.55 8.14 -2.39 -0.02 2.53 15 26 H 0.16 3.78 8.14 -2.38 -0.02 3.76 15 Total: -1.00 -60.57 234.85 5.37 -55.19 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 1.36 Total: 16.69 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 2.61 Total: -34.25 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.27 Total: -41.35 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -1.71 Total: -30.21 kcal Atomic # 9 Polarization: -9.64 SS G_CDS: 0.78 Total: -8.86 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.06 Total: 42.78 kcal Total: -60.57 5.37 -55.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214709086.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.317 kcal (2) G-P(sol) polarization free energy of solvation -60.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds