Wall clock time and date at job start Mon Mar 30 2020 02:46:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30892 * 1
3 3 Si 1.86800 * 120.00449 * 2 1
4 4 H 1.48500 * 109.46589 * 0.02562 * 3 2 1
5 5 H 1.48492 * 109.47150 * 119.99982 * 3 2 1
6 6 H 1.48498 * 109.47132 * 240.00239 * 3 2 1
7 7 C 1.39874 * 119.99598 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00066 * 155.03674 * 7 2 1
9 9 C 1.41196 * 120.00196 * 335.04282 * 7 2 1
10 10 C 1.40822 * 120.17770 * 333.44874 * 9 7 2
11 11 C 1.37747 * 119.69727 * 179.72375 * 10 9 7
12 12 C 1.40018 * 119.97843 * 0.56513 * 11 10 9
13 13 C 1.39152 * 120.19192 * 359.70115 * 12 11 10
14 14 C 1.36466 * 120.44168 * 0.02562 * 13 12 11
15 15 C 1.50699 * 119.97923 * 179.97438 * 14 13 12
16 16 F 1.39895 * 109.47093 * 270.01853 * 15 14 13
17 17 O 1.36324 * 108.48611 * 179.67458 * 12 11 10
18 18 C 1.43956 * 105.56539 * 17.37922 * 17 12 11
19 19 O 1.36491 * 131.47838 * 180.17291 * 11 10 9
20 20 H 0.96997 * 120.00286 * 174.21318 * 1 2 3
21 21 H 1.08000 * 120.14847 * 359.97438 * 10 9 7
22 22 H 1.07997 * 119.78284 * 179.97438 * 13 12 11
23 23 H 1.09005 * 109.47196 * 30.01980 * 15 14 13
24 24 H 1.09000 * 109.47561 * 150.01804 * 15 14 13
25 25 H 1.08991 * 110.55272 * 91.26383 * 18 17 12
26 26 H 1.09006 * 110.55003 * 214.08505 * 18 17 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3089 0.0000 0.0000
3 14 2.2431 1.6177 0.0000
4 1 1.2780 2.7464 0.0006
5 1 3.0968 1.6963 1.2124
6 1 3.0968 1.6963 -1.2125
7 6 2.0082 -1.2114 -0.0005
8 1 3.0126 -1.2550 -0.3953
9 6 1.4011 -2.3773 0.5149
10 6 0.3965 -2.2774 1.4967
11 6 -0.1932 -3.4210 1.9885
12 6 0.2156 -4.6758 1.5204
13 6 1.2124 -4.7716 0.5542
14 6 1.8011 -3.6465 0.0543
15 6 2.8801 -3.7624 -0.9914
16 9 4.1278 -3.8551 -0.3656
17 8 -0.5098 -5.6343 2.1634
18 6 -1.6454 -4.9490 2.7230
19 8 -1.1724 -3.6038 2.9216
20 1 -0.4850 -0.8357 -0.0847
21 1 0.0870 -1.3084 1.8594
22 1 1.5228 -5.7428 0.1982
23 1 2.7083 -4.6547 -1.5934
24 1 2.8601 -2.8817 -1.6333
25 1 -2.4820 -4.9612 2.0245
26 1 -1.9328 -5.3978 3.6739
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000214709086.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:46:02
Heat of formation + Delta-G solvation = -124.510603 kcal
Electronic energy + Delta-G solvation = -15133.251662 eV
Core-core repulsion = 12283.894166 eV
Total energy + Delta-G solvation = -2849.357496 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 224.064 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-48.38804 -42.71798 -39.04469 -37.02436 -35.61084 -32.24220 -31.11333 -27.60810
-27.41234 -25.50387 -23.40316 -22.56365 -20.24505 -18.46964 -18.24892 -18.00931
-16.98196 -16.57207 -16.36660 -15.77472 -15.53328 -15.52405 -14.89639 -14.55630
-14.18426 -13.92181 -13.73935 -13.18674 -12.89719 -12.51412 -12.01738 -11.94070
-11.68446 -11.53278 -11.35791 -10.85567 -9.70196 -9.38233 -8.91983 -6.56787
0.49626 0.65130 1.53068 1.60136 1.82381 2.06785 2.30911 2.52790
2.81851 3.22987 3.84620 3.93593 4.04411 4.09754 4.17457 4.30760
4.49958 4.58473 4.90444 4.98989 5.05525 5.33951 5.46348 5.53334
5.66497 5.83494 5.98718 6.29931 6.62169 6.76279 7.93170
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.025905 B = 0.011263 C = 0.008214
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1080.622490 B = 2485.360524 C = 3408.139173
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.803 5.803
2 C 0.006 3.994
3 Si 1.115 2.885
4 H -0.273 1.273
5 H -0.267 1.267
6 H -0.249 1.249
7 C -0.524 4.524
8 H 0.091 0.909
9 C 0.102 3.898
10 C -0.229 4.229
11 C 0.066 3.934
12 C -0.133 4.133
13 C -0.029 4.029
14 C -0.258 4.258
15 C 0.133 3.867
16 F -0.235 7.235
17 O -0.329 6.329
18 C 0.207 3.793
19 O -0.340 6.340
20 H 0.286 0.714
21 H 0.099 0.901
22 H 0.136 0.864
23 H 0.098 0.902
24 H 0.083 0.917
25 H 0.088 0.912
26 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.296 -3.688 -1.007 3.835
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.425 5.425
2 C -0.213 4.213
3 Si 0.931 3.069
4 H -0.197 1.197
5 H -0.191 1.191
6 H -0.173 1.173
7 C -0.551 4.551
8 H 0.109 0.891
9 C 0.099 3.901
10 C -0.249 4.249
11 C 0.021 3.979
12 C -0.176 4.176
13 C -0.048 4.048
14 C -0.260 4.260
15 C 0.079 3.921
16 F -0.216 7.216
17 O -0.247 6.247
18 C 0.096 3.904
19 O -0.257 6.257
20 H 0.098 0.902
21 H 0.117 0.883
22 H 0.153 0.847
23 H 0.116 0.884
24 H 0.101 0.899
25 H 0.106 0.894
26 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -0.006 -2.167 -0.754 2.295
hybrid contribution -0.388 -1.807 0.357 1.882
sum -0.394 -3.974 -0.397 4.013
Atomic orbital electron populations
1.70594 1.09070 1.33562 1.29264 1.28518 0.95546 1.07664 0.89541
0.83025 0.74806 0.69597 0.79431 1.19728 1.19146 1.17317 1.20774
1.03288 0.94102 1.36906 0.89057 1.17502 0.89623 0.93658 0.89350
1.20056 1.06638 0.94386 1.03818 1.19844 0.92177 0.95478 0.90366
1.19423 1.06396 0.85241 1.06518 1.19452 0.93661 0.98833 0.92815
1.19799 1.06804 0.92375 1.07041 1.20499 0.75629 1.03996 0.91953
1.92706 1.45334 1.97912 1.85645 1.87056 1.36847 1.32004 1.68783
1.25847 0.88477 0.74701 1.01413 1.87191 1.51533 1.34428 1.52559
0.90164 0.88313 0.84660 0.88387 0.89904 0.89430 0.82438
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -41.61 12.35 21.82 0.27 -41.35 15
2 C 0.01 0.27 4.94 85.23 0.42 0.69 15
3 Si 1.11 40.72 30.00 68.60 2.06 42.78 15
4 H -0.27 -9.90 7.11 99.48 0.71 -9.19 15
5 H -0.27 -9.45 7.11 99.48 0.71 -8.74 15
6 H -0.25 -8.13 7.11 99.48 0.71 -7.43 15
7 C -0.52 -26.28 8.03 23.39 0.19 -26.09 15
8 H 0.09 4.39 6.94 -2.91 -0.02 4.37 15
9 C 0.10 5.26 5.28 -21.29 -0.11 5.14 15
10 C -0.23 -12.14 7.95 22.79 0.18 -11.96 15
11 C 0.07 3.26 7.13 22.59 0.16 3.42 15
12 C -0.13 -6.16 7.18 22.92 0.16 -5.99 15
13 C -0.03 -1.27 9.62 22.08 0.21 -1.06 15
14 C -0.26 -11.85 5.62 -19.65 -0.11 -11.96 15
15 C 0.13 5.09 7.05 71.24 0.50 5.59 15
16 F -0.23 -9.64 17.34 44.97 0.78 -8.86 15
17 O -0.33 -13.47 11.39 -74.00 -0.84 -14.31 15
18 C 0.21 6.95 8.88 113.37 1.01 7.96 15
19 O -0.34 -15.04 11.40 -75.95 -0.87 -15.91 15
20 H 0.29 15.49 6.70 -92.71 -0.62 14.87 15
21 H 0.10 5.50 6.56 -2.91 -0.02 5.49 15
22 H 0.14 4.99 8.06 -2.91 -0.02 4.97 15
23 H 0.10 2.98 8.08 -2.38 -0.02 2.96 15
24 H 0.08 3.13 6.77 -2.39 -0.02 3.11 15
25 H 0.09 2.55 8.14 -2.39 -0.02 2.53 15
26 H 0.16 3.78 8.14 -2.38 -0.02 3.76 15
Total: -1.00 -60.57 234.85 5.37 -55.19
By element:
Atomic # 1 Polarization: 15.33 SS G_CDS: 1.36 Total: 16.69 kcal
Atomic # 6 Polarization: -36.87 SS G_CDS: 2.61 Total: -34.25 kcal
Atomic # 7 Polarization: -41.61 SS G_CDS: 0.27 Total: -41.35 kcal
Atomic # 8 Polarization: -28.51 SS G_CDS: -1.71 Total: -30.21 kcal
Atomic # 9 Polarization: -9.64 SS G_CDS: 0.78 Total: -8.86 kcal
Atomic # 14 Polarization: 40.72 SS G_CDS: 2.06 Total: 42.78 kcal
Total: -60.57 5.37 -55.19 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000214709086.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.317 kcal
(2) G-P(sol) polarization free energy of solvation -60.569 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.885 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.375 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.194 kcal
(6) G-S(sol) free energy of system = (1) + (5) -124.511 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds