Wall clock time and date at job start Mon Mar 30 2020 02:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30896 * 1 3 3 Si 1.86802 * 120.00406 * 2 1 4 4 H 1.48499 * 109.47314 * 88.02570 * 3 2 1 5 5 H 1.48502 * 109.47161 * 208.02817 * 3 2 1 6 6 H 1.48505 * 109.46786 * 328.02402 * 3 2 1 7 7 C 1.39914 * 120.00162 * 179.72177 * 2 1 3 8 8 H 1.08000 * 119.99613 * 330.82818 * 7 2 1 9 9 C 1.41107 * 120.00340 * 150.81539 * 7 2 1 10 10 C 1.41019 * 120.24992 * 324.97511 * 9 7 2 11 11 F 1.35103 * 120.12103 * 0.10361 * 10 9 7 12 12 C 1.37729 * 119.76563 * 179.79956 * 10 9 7 13 13 C 1.38674 * 120.39775 * 0.65213 * 12 10 9 14 14 C 1.38907 * 120.67103 * 359.61925 * 13 12 10 15 15 C 1.38556 * 120.02415 * 359.91447 * 14 13 12 16 16 O 1.35827 * 120.95072 * 180.50960 * 15 14 13 17 17 C 1.43170 * 116.76550 * 342.62711 * 16 15 14 18 18 C 1.53477 * 108.21705 * 46.10546 * 17 16 15 19 19 O 1.36224 * 119.26163 * 179.73534 * 14 13 12 20 20 H 0.96997 * 119.99528 * 0.02562 * 1 2 3 21 21 H 1.08003 * 119.80468 * 180.34241 * 12 10 9 22 22 H 1.08006 * 119.66344 * 179.64548 * 13 12 10 23 23 H 1.08997 * 109.71889 * 286.41993 * 17 16 15 24 24 H 1.09001 * 109.71118 * 165.78473 * 17 16 15 25 25 H 1.09003 * 109.71239 * 180.78603 * 18 17 16 26 26 H 1.08990 * 109.71948 * 60.14344 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4489 2.0705 1.3992 5 1 3.5609 1.4283 -0.6579 6 1 1.4620 2.6402 -0.7415 7 6 2.0086 -1.2117 0.0059 8 1 1.5713 -2.0854 0.4660 9 6 3.2853 -1.2922 -0.5896 10 6 3.5780 -0.5414 -1.7469 11 9 2.6369 0.2611 -2.2905 12 6 4.8288 -0.6244 -2.3175 13 6 5.7970 -1.4517 -1.7687 14 6 5.5256 -2.2032 -0.6324 15 6 4.2780 -2.1297 -0.0342 16 8 3.9956 -2.8483 1.0832 17 6 4.8693 -3.9418 1.3845 18 6 6.3169 -3.4564 1.2281 19 8 6.4961 -3.0105 -0.1206 20 1 -0.4849 0.8401 -0.0004 21 1 5.0554 -0.0454 -3.2007 22 1 6.7721 -1.5120 -2.2292 23 1 4.6807 -4.7642 0.6945 24 1 4.7018 -4.2748 2.4088 25 1 7.0042 -4.2758 1.4388 26 1 6.5047 -2.6321 1.9160 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214709152.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:55 Heat of formation + Delta-G solvation = -112.751962 kcal Electronic energy + Delta-G solvation = -15521.660074 eV Core-core repulsion = 12672.812470 eV Total energy + Delta-G solvation = -2848.847603 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.59358 -41.77449 -38.12637 -37.87298 -35.51857 -32.26862 -31.65046 -28.88704 -27.36892 -25.25615 -23.01305 -21.83091 -20.05845 -18.94054 -18.36288 -18.25708 -17.12640 -16.71678 -16.26215 -15.80478 -15.72917 -15.54329 -15.01932 -14.86613 -14.06629 -13.99919 -13.62802 -13.44987 -13.07366 -12.58269 -12.22559 -11.78065 -11.69517 -11.55654 -11.30041 -10.89686 -9.41949 -9.02534 -8.75847 -6.50244 0.49641 0.58793 1.26425 1.37520 1.41118 2.12002 2.30787 2.47335 2.57513 3.17594 3.59562 3.91198 4.06507 4.10999 4.22447 4.33350 4.55394 4.67622 4.70971 4.96595 5.05286 5.33038 5.43402 5.59773 5.87264 6.16175 6.26700 6.35258 6.63491 6.91815 8.04462 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.034419 B = 0.012477 C = 0.010316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.298304 B = 2243.518644 C = 2713.652202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.061 3.939 3 Si 0.962 3.038 4 H -0.281 1.281 5 H -0.248 1.248 6 H -0.262 1.262 7 C -0.475 4.475 8 H 0.061 0.939 9 C 0.048 3.952 10 C -0.044 4.044 11 F -0.153 7.153 12 C -0.100 4.100 13 C -0.199 4.199 14 C 0.068 3.932 15 C -0.043 4.043 16 O -0.323 6.323 17 C 0.009 3.991 18 C 0.020 3.980 19 O -0.321 6.321 20 H 0.297 0.703 21 H 0.151 0.849 22 H 0.151 0.849 23 H 0.067 0.933 24 H 0.144 0.856 25 H 0.158 0.842 26 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.930 -2.738 1.158 11.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.158 4.158 3 Si 0.785 3.215 4 H -0.208 1.208 5 H -0.172 1.172 6 H -0.186 1.186 7 C -0.503 4.503 8 H 0.079 0.921 9 C 0.045 3.955 10 C -0.064 4.064 11 F -0.133 7.133 12 C -0.119 4.119 13 C -0.219 4.219 14 C 0.023 3.977 15 C -0.089 4.089 16 O -0.238 6.238 17 C -0.067 4.067 18 C -0.055 4.055 19 O -0.236 6.236 20 H 0.107 0.893 21 H 0.169 0.831 22 H 0.169 0.831 23 H 0.086 0.914 24 H 0.162 0.838 25 H 0.175 0.825 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.610 -2.679 1.191 11.008 hybrid contribution -0.612 0.435 0.211 0.779 sum 9.998 -2.244 1.402 10.343 Atomic orbital electron populations 1.69806 1.09395 1.31869 1.33474 1.26858 0.95180 1.04239 0.89507 0.85536 0.81647 0.76487 0.77821 1.20794 1.17194 1.18639 1.18956 0.98971 0.97705 1.34678 0.92070 1.17153 0.92297 0.94331 0.91748 1.17486 0.88589 1.03229 0.97077 1.91013 1.65421 1.71693 1.85151 1.20723 0.90497 0.99862 1.00837 1.19921 1.01191 1.02059 0.98705 1.18816 0.86357 0.95733 0.96749 1.18793 0.92287 1.04755 0.93020 1.86209 1.53838 1.43446 1.40323 1.23860 0.90115 0.88025 1.04668 1.23849 0.98114 1.02096 0.81427 1.86200 1.43843 1.63191 1.30365 0.89280 0.83143 0.83100 0.91449 0.83824 0.82472 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.41 13.93 21.83 0.30 -46.10 15 2 C 0.06 3.40 4.72 85.24 0.40 3.80 15 3 Si 0.96 45.53 25.40 68.60 1.74 47.27 15 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 5 H -0.25 -11.83 5.31 99.48 0.53 -11.30 15 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 15 7 C -0.48 -28.05 8.93 23.38 0.21 -27.84 15 8 H 0.06 3.91 7.96 -2.91 -0.02 3.89 15 9 C 0.05 2.61 4.88 -21.15 -0.10 2.51 15 10 C -0.04 -2.17 5.03 22.83 0.11 -2.06 15 11 F -0.15 -7.82 12.78 44.97 0.57 -7.25 15 12 C -0.10 -4.15 9.99 22.25 0.22 -3.92 15 13 C -0.20 -7.77 9.95 22.53 0.22 -7.55 15 14 C 0.07 2.89 6.49 22.51 0.15 3.04 15 15 C -0.04 -2.10 6.53 23.09 0.15 -1.95 15 16 O -0.32 -14.63 9.76 -79.20 -0.77 -15.40 15 17 C 0.01 0.26 7.27 72.14 0.52 0.78 15 18 C 0.02 0.53 7.26 72.14 0.52 1.05 15 19 O -0.32 -11.31 10.42 -83.69 -0.87 -12.19 15 20 H 0.30 14.99 8.30 -92.71 -0.77 14.22 15 21 H 0.15 5.08 8.06 -2.91 -0.02 5.05 15 22 H 0.15 4.79 8.06 -2.91 -0.02 4.76 15 23 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 24 H 0.14 3.20 8.14 -2.39 -0.02 3.18 15 25 H 0.16 2.58 8.14 -2.39 -0.02 2.57 15 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 15 Total: -1.00 -66.86 227.81 4.42 -62.44 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 1.03 Total: 3.35 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 2.41 Total: -32.13 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.30 Total: -46.10 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -1.65 Total: -27.59 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 0.57 Total: -7.25 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.74 Total: 47.27 kcal Total: -66.86 4.42 -62.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214709152.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.310 kcal (2) G-P(sol) polarization free energy of solvation -66.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds