Wall clock time and date at job start Mon Mar 30 2020 02:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99913 * 2 1 4 4 H 1.48501 * 109.47162 * 270.00303 * 3 2 1 5 5 H 1.48501 * 109.47225 * 30.00260 * 3 2 1 6 6 H 1.48498 * 109.47108 * 150.00201 * 3 2 1 7 7 C 1.37878 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99866 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00075 * 179.97438 * 7 2 1 10 10 C 1.50695 * 109.47420 * 179.97438 * 9 7 2 11 11 C 1.33074 * 125.19184 * 89.99948 * 10 9 7 12 12 C 1.38912 * 115.63402 * 179.74081 * 11 10 9 13 13 C 1.34868 * 113.67374 * 0.02562 * 12 11 10 14 14 S 1.75514 * 110.04648 * 359.97438 * 13 12 11 15 15 C 1.51399 * 123.68394 * 179.97438 * 13 12 11 16 16 C 1.53439 * 107.90126 * 344.48177 * 15 13 12 17 17 O 1.43043 * 109.07625 * 47.46439 * 16 15 13 18 18 C 1.43007 * 114.25809 * 288.74625 * 17 16 15 19 19 H 0.96994 * 119.99857 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.46848 * 60.00024 * 9 7 2 21 21 H 1.08995 * 109.47586 * 300.00059 * 9 7 2 22 22 H 1.08005 * 122.17817 * 359.75712 * 11 10 9 23 23 H 1.09000 * 109.77495 * 104.07947 * 15 13 12 24 24 H 1.08993 * 109.77843 * 224.82268 * 15 13 12 25 25 H 1.08991 * 109.53766 * 167.34816 * 16 15 13 26 26 H 1.08996 * 109.53459 * 287.59045 * 16 15 13 27 27 H 1.08999 * 109.67942 * 292.34194 * 18 17 16 28 28 H 1.09002 * 109.70291 * 171.76606 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0140 -2.6148 -0.0010 11 6 4.2692 -3.3381 -1.0885 12 6 4.7313 -4.6276 -0.8577 13 6 4.8453 -4.9361 0.4503 14 16 4.3591 -3.5675 1.4358 15 6 5.3267 -6.2789 0.9575 16 6 5.2640 -7.2737 -0.2091 17 8 5.8607 -6.6777 -1.3644 18 6 5.0864 -5.6276 -1.9500 19 1 -0.4849 0.8400 0.0004 20 1 3.8752 -0.6804 0.8889 21 1 3.8746 -0.6801 -0.8911 22 1 4.1266 -2.9478 -2.0854 23 1 6.3533 -6.1923 1.3134 24 1 4.6829 -6.6192 1.7684 25 1 5.8079 -8.1804 0.0555 26 1 4.2239 -7.5203 -0.4223 27 1 4.1741 -6.0405 -2.3805 28 1 5.6680 -5.1316 -2.7270 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214743501.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:15 Heat of formation + Delta-G solvation = -25.967178 kcal Electronic energy + Delta-G solvation = -12826.063427 eV Core-core repulsion = 10547.192270 eV Total energy + Delta-G solvation = -2278.871157 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.36263 -36.41513 -33.37751 -32.17791 -30.75939 -27.66543 -25.30253 -23.88857 -22.16244 -20.41023 -17.75474 -16.98098 -16.85010 -16.23591 -15.18328 -14.64862 -14.38773 -13.90637 -13.21841 -13.07891 -12.76996 -12.53787 -11.96975 -11.82420 -11.53606 -11.09232 -10.92240 -10.59105 -10.35524 -10.18030 -9.99830 -9.53323 -9.45849 -8.65233 -7.83529 -7.65728 -6.14257 -4.14734 1.57776 2.17610 2.62946 3.22141 3.24295 3.31971 3.33913 3.88932 4.34831 4.85025 4.96500 5.13813 5.18820 5.27945 5.49865 5.53376 5.65108 5.68498 5.89074 6.07091 6.24533 6.53951 6.76484 6.84630 7.00718 7.17500 7.26065 7.56935 8.40712 8.89842 9.44564 10.98485 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.052777 B = 0.006888 C = 0.006674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.402944 B = 4063.900832 C = 4194.640714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.075 0.925 9 C 0.044 3.956 10 C -0.095 4.095 11 C -0.165 4.165 12 C -0.132 4.132 13 C -0.218 4.218 14 S 0.092 5.908 15 C -0.073 4.073 16 C 0.067 3.933 17 O -0.382 6.382 18 C 0.127 3.873 19 H 0.266 0.734 20 H 0.030 0.970 21 H 0.036 0.964 22 H 0.135 0.865 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.583 -10.714 -0.158 15.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.555 4.555 8 H 0.094 0.906 9 C 0.005 3.995 10 C -0.212 4.212 11 C -0.193 4.193 12 C -0.146 4.146 13 C -0.335 4.335 14 S 0.359 5.641 15 C -0.113 4.113 16 C -0.012 4.012 17 O -0.301 6.301 18 C 0.049 3.951 19 H 0.075 0.925 20 H 0.048 0.952 21 H 0.054 0.946 22 H 0.152 0.848 23 H 0.098 0.902 24 H 0.099 0.901 25 H 0.115 0.885 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.495 -10.348 1.355 14.801 hybrid contribution -0.019 0.886 -1.339 1.605 sum 10.476 -9.462 0.016 14.116 Atomic orbital electron populations 1.69892 1.06224 1.27108 1.50213 1.24968 0.94768 0.98978 0.94325 0.86827 0.80427 0.83663 0.78782 1.19978 1.21035 1.18912 1.20907 0.87848 0.94882 1.51880 0.90649 1.18426 0.97535 0.85761 0.97780 1.24707 1.00997 1.01830 0.93675 1.19618 1.06612 0.93279 0.99797 1.20080 1.03985 0.96211 0.94311 1.24427 1.12111 1.00489 0.96423 1.83952 1.64416 1.04793 1.10928 1.20807 1.01500 0.90511 0.98440 1.22604 0.98524 0.94898 0.85132 1.87907 1.47495 1.50961 1.43691 1.21490 0.95578 0.85526 0.92546 0.92453 0.95165 0.94566 0.84756 0.90177 0.90066 0.88514 0.92689 0.91800 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.96 55.43 0.77 -26.47 15 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 15 3 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 15 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.26 -6.11 6.54 56.52 0.37 -5.74 15 7 C -0.52 -14.64 9.65 -34.44 -0.33 -14.97 15 8 H 0.08 2.35 7.98 -52.48 -0.42 1.93 15 9 C 0.04 1.06 4.53 -29.04 -0.13 0.93 15 10 C -0.09 -2.04 5.69 -36.11 -0.21 -2.24 15 11 C -0.17 -3.22 9.90 -41.13 -0.41 -3.63 15 12 C -0.13 -2.28 5.86 -104.78 -0.61 -2.90 15 13 C -0.22 -3.68 6.44 -35.16 -0.23 -3.91 15 14 S 0.09 1.74 23.31 -107.50 -2.51 -0.77 15 15 C -0.07 -0.95 6.55 -27.31 -0.18 -1.12 15 16 C 0.07 0.78 6.83 37.39 0.26 1.04 15 17 O -0.38 -5.37 10.72 -35.23 -0.38 -5.74 15 18 C 0.13 1.78 7.15 36.79 0.26 2.04 15 19 H 0.27 7.52 8.31 -40.82 -0.34 7.18 15 20 H 0.03 0.72 7.20 -51.93 -0.37 0.35 15 21 H 0.04 0.84 7.57 -51.93 -0.39 0.45 15 22 H 0.13 2.46 8.06 -52.48 -0.42 2.04 15 23 H 0.08 0.97 8.14 -51.93 -0.42 0.54 15 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 25 H 0.10 0.86 8.14 -51.93 -0.42 0.43 15 26 H 0.05 0.62 8.08 -51.93 -0.42 0.20 15 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 28 H 0.10 1.28 8.14 -51.93 -0.42 0.86 15 LS Contribution 252.18 15.07 3.80 3.80 Total: -1.00 -30.88 252.18 -7.96 -38.84 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -3.31 Total: -3.31 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -1.67 Total: -22.80 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.77 Total: -26.47 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.38 Total: -5.74 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.51 Total: -0.77 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.88 -7.96 -38.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214743501.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.876 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds