Wall clock time and date at job start Mon Mar 30 2020 02:58:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86792 * 120.00126 * 2 1
4 4 H 1.48498 * 109.47540 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.47435 * 300.00555 * 3 2 1
6 6 H 1.48500 * 109.47012 * 60.00260 * 3 2 1
7 7 C 1.37877 * 119.99864 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00209 * 179.97438 * 7 2 1
9 9 C 1.50704 * 119.99993 * 359.97438 * 7 2 1
10 10 S 1.81408 * 109.46946 * 179.97438 * 9 7 2
11 11 C 1.76197 * 102.99664 * 179.97438 * 10 9 7
12 12 C 1.38991 * 120.08301 * 0.02562 * 11 10 9
13 13 C 1.38065 * 119.91907 * 180.02562 * 12 11 10
14 14 C 1.38316 * 120.08242 * 0.02562 * 13 12 11
15 15 C 1.38280 * 120.16146 * 359.97438 * 14 13 12
16 16 C 1.38108 * 120.07955 * 0.02562 * 15 14 13
17 17 C 1.50698 * 120.04224 * 179.97438 * 16 15 14
18 18 O 1.42906 * 109.46950 * 0.02562 * 17 16 15
19 19 H 0.96996 * 119.99638 * 359.97438 * 1 2 3
20 20 H 1.09004 * 109.47227 * 60.00369 * 9 7 2
21 21 H 1.08996 * 109.47031 * 299.99921 * 9 7 2
22 22 H 1.08001 * 120.04160 * 359.97438 * 12 11 10
23 23 H 1.08010 * 119.95760 * 179.72373 * 13 12 11
24 24 H 1.07996 * 119.92487 * 179.97438 * 14 13 12
25 25 H 1.08005 * 119.96452 * 180.02562 * 15 14 13
26 26 H 1.08999 * 109.47236 * 120.01722 * 17 16 15
27 27 H 1.08995 * 109.47596 * 240.02052 * 17 16 15
28 28 H 0.96703 * 113.99494 * 179.97438 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.7092 1.3464 -0.0006
5 1 1.8904 2.3965 -1.2124
6 1 1.8905 2.3963 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 16 2.4298 -3.8780 -0.0021
11 6 1.3824 -5.2949 -0.0011
12 6 0.0011 -5.1401 -0.0001
13 6 -0.8164 -6.2527 0.0012
14 6 -0.2625 -7.5201 0.0020
15 6 1.1112 -7.6779 0.0010
16 6 1.9353 -6.5697 -0.0003
17 6 3.4324 -6.7427 -0.0008
18 8 3.7509 -8.1358 -0.0004
19 1 -0.4849 0.8400 0.0004
20 1 0.6240 -2.5568 -0.8903
21 1 0.6247 -2.5571 0.8897
22 1 -0.4321 -4.1508 0.0005
23 1 -1.8899 -6.1332 0.0065
24 1 -0.9044 -8.3886 0.0034
25 1 1.5404 -8.6691 0.0012
26 1 3.8519 -6.2744 -0.8912
27 1 3.8527 -6.2736 0.8887
28 1 4.6997 -8.3222 -0.0011
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000217874790.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:59
Heat of formation + Delta-G solvation = -40.350159 kcal
Electronic energy + Delta-G solvation = -12525.977407 eV
Core-core repulsion = 10246.482558 eV
Total energy + Delta-G solvation = -2279.494849 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 224.061 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-38.90216 -36.46763 -33.28809 -31.41124 -30.69503 -28.59010 -25.80574 -23.28058
-22.41120 -20.85753 -17.52179 -17.03177 -16.27843 -15.57528 -14.84423 -14.82781
-14.34304 -13.89591 -13.46147 -13.00959 -12.79721 -12.38342 -12.09091 -11.93432
-11.17177 -10.98112 -10.86783 -10.70551 -10.22443 -10.00960 -9.67679 -9.20507
-9.08633 -8.65646 -8.39501 -6.64920 -6.28713 -4.34386 1.61512 1.74387
2.46103 3.19809 3.27363 3.32580 3.62061 4.05933 4.27088 4.29590
5.08933 5.12373 5.31591 5.41950 5.55659 5.66999 5.77090 6.00020
6.13844 6.40726 6.68717 6.80470 6.85694 6.94011 6.97544 7.29365
7.64399 7.66742 7.87703 8.67049 9.29760 10.82623
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.042415 B = 0.006776 C = 0.005868
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 659.985096 B = 4131.055528 C = 4770.594744
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.889 5.889
2 C 0.068 3.932
3 Si 0.908 3.092
4 H -0.269 1.269
5 H -0.280 1.280
6 H -0.280 1.280
7 C -0.518 4.518
8 H 0.069 0.931
9 C 0.070 3.930
10 S -0.162 6.162
11 C -0.066 4.066
12 C -0.133 4.133
13 C -0.103 4.103
14 C -0.146 4.146
15 C -0.085 4.085
16 C -0.090 4.090
17 C 0.120 3.880
18 O -0.572 6.572
19 H 0.267 0.733
20 H 0.044 0.956
21 H 0.044 0.956
22 H 0.133 0.867
23 H 0.119 0.881
24 H 0.117 0.883
25 H 0.129 0.871
26 H 0.063 0.937
27 H 0.064 0.936
28 H 0.379 0.621
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.782 -11.944 0.006 12.263
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.527 5.527
2 C -0.137 4.137
3 Si 0.735 3.265
4 H -0.194 1.194
5 H -0.206 1.206
6 H -0.206 1.206
7 C -0.558 4.558
8 H 0.087 0.913
9 C -0.076 4.076
10 S 0.086 5.914
11 C -0.179 4.179
12 C -0.157 4.157
13 C -0.123 4.123
14 C -0.167 4.167
15 C -0.105 4.105
16 C -0.097 4.097
17 C 0.043 3.957
18 O -0.378 6.378
19 H 0.076 0.924
20 H 0.062 0.938
21 H 0.062 0.938
22 H 0.151 0.849
23 H 0.137 0.863
24 H 0.135 0.865
25 H 0.146 0.854
26 H 0.081 0.919
27 H 0.081 0.919
28 H 0.226 0.774
Dipole moment (debyes) X Y Z Total
from point charges 3.231 -11.646 0.005 12.086
hybrid contribution -0.553 0.946 0.001 1.096
sum 2.678 -10.699 0.006 11.029
Atomic orbital electron populations
1.69956 1.06165 1.27461 1.49100 1.24959 0.95000 0.99352 0.94381
0.86266 0.80042 0.82353 0.77839 1.19373 1.20634 1.20630 1.20660
0.93488 0.88541 1.53075 0.91297 1.21393 0.94440 0.90938 1.00872
1.85235 1.18103 0.98081 1.89970 1.21826 0.96981 0.96912 1.02206
1.21346 0.92144 0.99933 1.02317 1.21045 0.99390 0.92422 0.99437
1.21043 0.94982 0.96950 1.03730 1.20812 0.92826 0.98351 0.98487
1.19236 0.94389 0.91718 1.04338 1.20813 0.92319 0.81553 1.00999
1.86399 1.29071 1.24434 1.97882 0.92372 0.93771 0.93766 0.84947
0.86258 0.86496 0.85360 0.91856 0.91851 0.77425
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.30 13.29 55.43 0.74 -24.57 15
2 C 0.07 1.85 5.46 -17.82 -0.10 1.76 15
3 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 15
4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15
5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15
6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15
7 C -0.52 -14.22 9.13 -34.44 -0.31 -14.54 15
8 H 0.07 1.87 7.71 -52.48 -0.40 1.47 15
9 C 0.07 1.79 4.09 36.01 0.15 1.93 15
10 S -0.16 -3.49 20.74 -107.50 -2.23 -5.72 15
11 C -0.07 -1.29 6.11 -39.04 -0.24 -1.53 15
12 C -0.13 -2.54 9.36 -39.37 -0.37 -2.91 15
13 C -0.10 -1.66 10.04 -39.62 -0.40 -2.05 15
14 C -0.15 -2.17 10.04 -39.54 -0.40 -2.57 15
15 C -0.09 -1.36 9.37 -39.61 -0.37 -1.73 15
16 C -0.09 -1.57 5.90 -104.40 -0.62 -2.19 15
17 C 0.12 1.79 6.32 36.00 0.23 2.02 15
18 O -0.57 -7.26 12.14 -35.23 -0.43 -7.69 15
19 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15
20 H 0.04 1.17 7.75 -51.92 -0.40 0.77 15
21 H 0.04 1.17 7.75 -51.93 -0.40 0.77 15
22 H 0.13 2.68 5.88 -52.49 -0.31 2.37 15
23 H 0.12 1.61 8.06 -52.48 -0.42 1.19 15
24 H 0.12 1.39 8.06 -52.49 -0.42 0.96 15
25 H 0.13 1.86 7.00 -52.48 -0.37 1.50 15
26 H 0.06 0.93 8.10 -51.93 -0.42 0.51 15
27 H 0.06 0.93 8.10 -51.93 -0.42 0.51 15
28 H 0.38 2.85 9.12 45.56 0.42 3.26 15
LS Contribution 258.70 15.07 3.90 3.90
Total: -1.00 -29.81 258.70 -7.76 -37.57
By element:
Atomic # 1 Polarization: 4.74 SS G_CDS: -2.29 Total: 2.45 kcal
Atomic # 6 Polarization: -19.38 SS G_CDS: -2.43 Total: -21.80 kcal
Atomic # 7 Polarization: -25.30 SS G_CDS: 0.74 Total: -24.57 kcal
Atomic # 8 Polarization: -7.26 SS G_CDS: -0.43 Total: -7.69 kcal
Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal
Atomic # 16 Polarization: -3.49 SS G_CDS: -2.23 Total: -5.72 kcal
Total LS contribution 3.90 Total: 3.90 kcal
Total: -29.81 -7.76 -37.57 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000217874790.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.783 kcal
(2) G-P(sol) polarization free energy of solvation -29.806 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.589 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.567 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.350 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds