Wall clock time and date at job start Mon Mar 30 2020 02:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 120.00126 * 2 1 4 4 H 1.48498 * 109.47540 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47435 * 300.00555 * 3 2 1 6 6 H 1.48500 * 109.47012 * 60.00260 * 3 2 1 7 7 C 1.37877 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00209 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99993 * 359.97438 * 7 2 1 10 10 S 1.81408 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.76197 * 102.99664 * 179.97438 * 10 9 7 12 12 C 1.38991 * 120.08301 * 0.02562 * 11 10 9 13 13 C 1.38065 * 119.91907 * 180.02562 * 12 11 10 14 14 C 1.38316 * 120.08242 * 0.02562 * 13 12 11 15 15 C 1.38280 * 120.16146 * 359.97438 * 14 13 12 16 16 C 1.38108 * 120.07955 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.04224 * 179.97438 * 16 15 14 18 18 O 1.42906 * 109.46950 * 0.02562 * 17 16 15 19 19 H 0.96996 * 119.99638 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47227 * 60.00369 * 9 7 2 21 21 H 1.08996 * 109.47031 * 299.99921 * 9 7 2 22 22 H 1.08001 * 120.04160 * 359.97438 * 12 11 10 23 23 H 1.08010 * 119.95760 * 179.72373 * 13 12 11 24 24 H 1.07996 * 119.92487 * 179.97438 * 14 13 12 25 25 H 1.08005 * 119.96452 * 180.02562 * 15 14 13 26 26 H 1.08999 * 109.47236 * 120.01722 * 17 16 15 27 27 H 1.08995 * 109.47596 * 240.02052 * 17 16 15 28 28 H 0.96703 * 113.99494 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4298 -3.8780 -0.0021 11 6 1.3824 -5.2949 -0.0011 12 6 0.0011 -5.1401 -0.0001 13 6 -0.8164 -6.2527 0.0012 14 6 -0.2625 -7.5201 0.0020 15 6 1.1112 -7.6779 0.0010 16 6 1.9353 -6.5697 -0.0003 17 6 3.4324 -6.7427 -0.0008 18 8 3.7509 -8.1358 -0.0004 19 1 -0.4849 0.8400 0.0004 20 1 0.6240 -2.5568 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 -0.4321 -4.1508 0.0005 23 1 -1.8899 -6.1332 0.0065 24 1 -0.9044 -8.3886 0.0034 25 1 1.5404 -8.6691 0.0012 26 1 3.8519 -6.2744 -0.8912 27 1 3.8527 -6.2736 0.8887 28 1 4.6997 -8.3222 -0.0011 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217874790.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:59 Heat of formation + Delta-G solvation = -59.457010 kcal Electronic energy + Delta-G solvation = -12526.805942 eV Core-core repulsion = 10246.482558 eV Total energy + Delta-G solvation = -2280.323385 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.20339 -37.54055 -35.37730 -32.68373 -32.10405 -30.61623 -27.04552 -25.30987 -23.75802 -22.20812 -19.06189 -18.33815 -18.02912 -17.04120 -16.59572 -16.00499 -15.69701 -15.35787 -14.82626 -14.66215 -14.64349 -14.24316 -13.60217 -13.23984 -12.79327 -12.69125 -12.52158 -12.19172 -11.70883 -11.61236 -11.29682 -10.89668 -10.86308 -10.51148 -9.70820 -8.37940 -8.30952 -6.52658 0.27052 0.39119 0.81770 1.39336 1.39739 1.54150 1.79869 2.33954 2.73519 2.97309 3.24267 3.88072 4.09009 4.17222 4.38272 4.50508 4.51754 4.68536 4.81408 4.82853 4.86776 5.09751 5.38079 5.49647 5.53040 5.55678 5.79850 6.01590 6.54932 6.88296 7.16472 8.74613 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.042415 B = 0.006776 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.985096 B = 4131.055528 C = 4770.594744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.017 3.983 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.077 3.923 10 S -0.155 6.155 11 C -0.093 4.093 12 C -0.155 4.155 13 C -0.105 4.105 14 C -0.128 4.128 15 C -0.087 4.087 16 C -0.097 4.097 17 C 0.126 3.874 18 O -0.575 6.575 19 H 0.272 0.728 20 H 0.019 0.981 21 H 0.020 0.980 22 H 0.106 0.894 23 H 0.146 0.854 24 H 0.159 0.841 25 H 0.149 0.851 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 -13.464 0.008 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.071 4.071 10 S 0.091 5.909 11 C -0.206 4.206 12 C -0.179 4.179 13 C -0.124 4.124 14 C -0.149 4.149 15 C -0.106 4.106 16 C -0.104 4.104 17 C 0.049 3.951 18 O -0.384 6.384 19 H 0.081 0.919 20 H 0.038 0.962 21 H 0.038 0.962 22 H 0.124 0.876 23 H 0.163 0.837 24 H 0.176 0.824 25 H 0.167 0.833 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 3.755 -13.203 0.007 13.727 hybrid contribution -0.766 1.203 0.000 1.426 sum 2.988 -12.000 0.008 12.367 Atomic orbital electron populations 1.70067 1.07783 1.28695 1.49594 1.25934 0.95888 1.03143 0.93511 0.85176 0.78836 0.77510 0.78220 1.18621 1.19789 1.19778 1.20995 0.93625 0.89833 1.53561 0.91427 1.21017 0.94801 0.92799 0.98458 1.84855 1.17176 0.97719 1.91155 1.21829 0.96922 0.96663 1.05186 1.21324 0.92581 1.00036 1.03957 1.21354 1.00502 0.92003 0.98550 1.21523 0.95180 0.97607 1.00582 1.21150 0.93270 0.98596 0.97610 1.19594 0.96262 0.91118 1.03421 1.20634 0.90725 0.82844 1.00945 1.86330 1.31593 1.22677 1.97808 0.91940 0.96229 0.96219 0.87552 0.83651 0.82353 0.83291 0.91881 0.91876 0.74665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.00 13.29 21.45 0.28 -53.71 15 2 C 0.02 0.93 5.46 84.65 0.46 1.39 15 3 Si 0.98 43.09 29.54 68.60 2.03 45.12 15 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 7 C -0.54 -30.68 9.13 25.60 0.23 -30.45 15 8 H 0.07 3.76 7.71 -2.91 -0.02 3.73 15 9 C 0.08 4.12 4.09 71.24 0.29 4.41 15 10 S -0.16 -6.93 20.74 -56.49 -1.17 -8.10 15 11 C -0.09 -3.69 6.11 22.62 0.14 -3.55 15 12 C -0.15 -6.04 9.36 22.41 0.21 -5.83 15 13 C -0.10 -3.19 10.04 22.25 0.22 -2.97 15 14 C -0.13 -3.37 10.04 22.30 0.22 -3.15 15 15 C -0.09 -2.50 9.37 22.25 0.21 -2.29 15 16 C -0.10 -3.28 5.90 -19.72 -0.12 -3.40 15 17 C 0.13 3.55 6.32 71.24 0.45 4.00 15 18 O -0.58 -12.92 12.14 -148.98 -1.81 -14.73 15 19 H 0.27 14.74 8.31 -92.71 -0.77 13.97 15 20 H 0.02 1.11 7.75 -2.39 -0.02 1.09 15 21 H 0.02 1.12 7.75 -2.39 -0.02 1.10 15 22 H 0.11 4.63 5.88 -2.91 -0.02 4.61 15 23 H 0.15 3.60 8.06 -2.91 -0.02 3.57 15 24 H 0.16 2.89 8.06 -2.91 -0.02 2.86 15 25 H 0.15 3.71 7.00 -2.91 -0.02 3.69 15 26 H 0.06 1.78 8.10 -2.39 -0.02 1.76 15 27 H 0.06 1.78 8.10 -2.39 -0.02 1.76 15 28 H 0.40 4.82 9.12 -74.05 -0.68 4.14 15 Total: -1.00 -65.27 258.70 2.15 -63.13 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.49 Total: 10.13 kcal Atomic # 6 Polarization: -44.15 SS G_CDS: 2.33 Total: -41.83 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.28 Total: -53.71 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -1.81 Total: -14.73 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -6.93 SS G_CDS: -1.17 Total: -8.10 kcal Total: -65.27 2.15 -63.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217874790.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.669 kcal (2) G-P(sol) polarization free energy of solvation -65.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds