Wall clock time and date at job start Mon Mar 30 2020 02:58:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86792 * 120.00126 * 2 1
4 4 H 1.48498 * 109.47540 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.47435 * 300.00555 * 3 2 1
6 6 H 1.48500 * 109.47012 * 60.00260 * 3 2 1
7 7 C 1.37877 * 119.99864 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00209 * 179.97438 * 7 2 1
9 9 C 1.50704 * 119.99993 * 359.97438 * 7 2 1
10 10 S 1.81408 * 109.46946 * 179.97438 * 9 7 2
11 11 C 1.76197 * 102.99664 * 179.97438 * 10 9 7
12 12 C 1.38991 * 120.08301 * 0.02562 * 11 10 9
13 13 C 1.38065 * 119.91907 * 180.02562 * 12 11 10
14 14 C 1.38316 * 120.08242 * 0.02562 * 13 12 11
15 15 C 1.38280 * 120.16146 * 359.97438 * 14 13 12
16 16 C 1.38108 * 120.07955 * 0.02562 * 15 14 13
17 17 C 1.50698 * 120.04224 * 179.97438 * 16 15 14
18 18 O 1.42906 * 109.46950 * 0.02562 * 17 16 15
19 19 H 0.96996 * 119.99638 * 359.97438 * 1 2 3
20 20 H 1.09004 * 109.47227 * 60.00369 * 9 7 2
21 21 H 1.08996 * 109.47031 * 299.99921 * 9 7 2
22 22 H 1.08001 * 120.04160 * 359.97438 * 12 11 10
23 23 H 1.08010 * 119.95760 * 179.72373 * 13 12 11
24 24 H 1.07996 * 119.92487 * 179.97438 * 14 13 12
25 25 H 1.08005 * 119.96452 * 180.02562 * 15 14 13
26 26 H 1.08999 * 109.47236 * 120.01722 * 17 16 15
27 27 H 1.08995 * 109.47596 * 240.02052 * 17 16 15
28 28 H 0.96703 * 113.99494 * 179.97438 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.7092 1.3464 -0.0006
5 1 1.8904 2.3965 -1.2124
6 1 1.8905 2.3963 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 16 2.4298 -3.8780 -0.0021
11 6 1.3824 -5.2949 -0.0011
12 6 0.0011 -5.1401 -0.0001
13 6 -0.8164 -6.2527 0.0012
14 6 -0.2625 -7.5201 0.0020
15 6 1.1112 -7.6779 0.0010
16 6 1.9353 -6.5697 -0.0003
17 6 3.4324 -6.7427 -0.0008
18 8 3.7509 -8.1358 -0.0004
19 1 -0.4849 0.8400 0.0004
20 1 0.6240 -2.5568 -0.8903
21 1 0.6247 -2.5571 0.8897
22 1 -0.4321 -4.1508 0.0005
23 1 -1.8899 -6.1332 0.0065
24 1 -0.9044 -8.3886 0.0034
25 1 1.5404 -8.6691 0.0012
26 1 3.8519 -6.2744 -0.8912
27 1 3.8527 -6.2736 0.8887
28 1 4.6997 -8.3222 -0.0011
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000217874790.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:59
Heat of formation + Delta-G solvation = -59.457010 kcal
Electronic energy + Delta-G solvation = -12526.805942 eV
Core-core repulsion = 10246.482558 eV
Total energy + Delta-G solvation = -2280.323385 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 224.061 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.20339 -37.54055 -35.37730 -32.68373 -32.10405 -30.61623 -27.04552 -25.30987
-23.75802 -22.20812 -19.06189 -18.33815 -18.02912 -17.04120 -16.59572 -16.00499
-15.69701 -15.35787 -14.82626 -14.66215 -14.64349 -14.24316 -13.60217 -13.23984
-12.79327 -12.69125 -12.52158 -12.19172 -11.70883 -11.61236 -11.29682 -10.89668
-10.86308 -10.51148 -9.70820 -8.37940 -8.30952 -6.52658 0.27052 0.39119
0.81770 1.39336 1.39739 1.54150 1.79869 2.33954 2.73519 2.97309
3.24267 3.88072 4.09009 4.17222 4.38272 4.50508 4.51754 4.68536
4.81408 4.82853 4.86776 5.09751 5.38079 5.49647 5.53040 5.55678
5.79850 6.01590 6.54932 6.88296 7.16472 8.74613
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.042415 B = 0.006776 C = 0.005868
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 659.985096 B = 4131.055528 C = 4770.594744
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.923 5.923
2 C 0.017 3.983
3 Si 0.980 3.020
4 H -0.262 1.262
5 H -0.273 1.273
6 H -0.273 1.273
7 C -0.541 4.541
8 H 0.068 0.932
9 C 0.077 3.923
10 S -0.155 6.155
11 C -0.093 4.093
12 C -0.155 4.155
13 C -0.105 4.105
14 C -0.128 4.128
15 C -0.087 4.087
16 C -0.097 4.097
17 C 0.126 3.874
18 O -0.575 6.575
19 H 0.272 0.728
20 H 0.019 0.981
21 H 0.020 0.980
22 H 0.106 0.894
23 H 0.146 0.854
24 H 0.159 0.841
25 H 0.149 0.851
26 H 0.063 0.937
27 H 0.063 0.937
28 H 0.403 0.597
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.295 -13.464 0.008 13.862
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.561 5.561
2 C -0.185 4.185
3 Si 0.803 3.197
4 H -0.186 1.186
5 H -0.198 1.198
6 H -0.198 1.198
7 C -0.580 4.580
8 H 0.086 0.914
9 C -0.071 4.071
10 S 0.091 5.909
11 C -0.206 4.206
12 C -0.179 4.179
13 C -0.124 4.124
14 C -0.149 4.149
15 C -0.106 4.106
16 C -0.104 4.104
17 C 0.049 3.951
18 O -0.384 6.384
19 H 0.081 0.919
20 H 0.038 0.962
21 H 0.038 0.962
22 H 0.124 0.876
23 H 0.163 0.837
24 H 0.176 0.824
25 H 0.167 0.833
26 H 0.081 0.919
27 H 0.081 0.919
28 H 0.253 0.747
Dipole moment (debyes) X Y Z Total
from point charges 3.755 -13.203 0.007 13.727
hybrid contribution -0.766 1.203 0.000 1.426
sum 2.988 -12.000 0.008 12.367
Atomic orbital electron populations
1.70067 1.07783 1.28695 1.49594 1.25934 0.95888 1.03143 0.93511
0.85176 0.78836 0.77510 0.78220 1.18621 1.19789 1.19778 1.20995
0.93625 0.89833 1.53561 0.91427 1.21017 0.94801 0.92799 0.98458
1.84855 1.17176 0.97719 1.91155 1.21829 0.96922 0.96663 1.05186
1.21324 0.92581 1.00036 1.03957 1.21354 1.00502 0.92003 0.98550
1.21523 0.95180 0.97607 1.00582 1.21150 0.93270 0.98596 0.97610
1.19594 0.96262 0.91118 1.03421 1.20634 0.90725 0.82844 1.00945
1.86330 1.31593 1.22677 1.97808 0.91940 0.96229 0.96219 0.87552
0.83651 0.82353 0.83291 0.91881 0.91876 0.74665
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.00 13.29 21.45 0.28 -53.71 15
2 C 0.02 0.93 5.46 84.65 0.46 1.39 15
3 Si 0.98 43.09 29.54 68.60 2.03 45.12 15
4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15
5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15
6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15
7 C -0.54 -30.68 9.13 25.60 0.23 -30.45 15
8 H 0.07 3.76 7.71 -2.91 -0.02 3.73 15
9 C 0.08 4.12 4.09 71.24 0.29 4.41 15
10 S -0.16 -6.93 20.74 -56.49 -1.17 -8.10 15
11 C -0.09 -3.69 6.11 22.62 0.14 -3.55 15
12 C -0.15 -6.04 9.36 22.41 0.21 -5.83 15
13 C -0.10 -3.19 10.04 22.25 0.22 -2.97 15
14 C -0.13 -3.37 10.04 22.30 0.22 -3.15 15
15 C -0.09 -2.50 9.37 22.25 0.21 -2.29 15
16 C -0.10 -3.28 5.90 -19.72 -0.12 -3.40 15
17 C 0.13 3.55 6.32 71.24 0.45 4.00 15
18 O -0.58 -12.92 12.14 -148.98 -1.81 -14.73 15
19 H 0.27 14.74 8.31 -92.71 -0.77 13.97 15
20 H 0.02 1.11 7.75 -2.39 -0.02 1.09 15
21 H 0.02 1.12 7.75 -2.39 -0.02 1.10 15
22 H 0.11 4.63 5.88 -2.91 -0.02 4.61 15
23 H 0.15 3.60 8.06 -2.91 -0.02 3.57 15
24 H 0.16 2.89 8.06 -2.91 -0.02 2.86 15
25 H 0.15 3.71 7.00 -2.91 -0.02 3.69 15
26 H 0.06 1.78 8.10 -2.39 -0.02 1.76 15
27 H 0.06 1.78 8.10 -2.39 -0.02 1.76 15
28 H 0.40 4.82 9.12 -74.05 -0.68 4.14 15
Total: -1.00 -65.27 258.70 2.15 -63.13
By element:
Atomic # 1 Polarization: 9.64 SS G_CDS: 0.49 Total: 10.13 kcal
Atomic # 6 Polarization: -44.15 SS G_CDS: 2.33 Total: -41.83 kcal
Atomic # 7 Polarization: -54.00 SS G_CDS: 0.28 Total: -53.71 kcal
Atomic # 8 Polarization: -12.92 SS G_CDS: -1.81 Total: -14.73 kcal
Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal
Atomic # 16 Polarization: -6.93 SS G_CDS: -1.17 Total: -8.10 kcal
Total: -65.27 2.15 -63.13 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000217874790.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.669 kcal
(2) G-P(sol) polarization free energy of solvation -65.275 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.605 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.126 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.457 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds