Wall clock time and date at job start Mon Mar 30 2020 02:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39460 * 120.73869 * 286.03273 * 3 2 1 5 5 N 1.31645 * 120.77508 * 180.02562 * 4 3 2 6 6 C 1.32197 * 122.52807 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.30515 * 180.02562 * 6 5 4 8 8 F 1.39902 * 109.46697 * 119.99997 * 7 6 5 9 9 F 1.39895 * 109.47420 * 240.00495 * 7 6 5 10 10 C 1.37610 * 121.39113 * 359.71421 * 6 5 4 11 11 C 1.41066 * 119.00749 * 0.55905 * 10 6 5 12 12 C 1.40928 * 121.11507 * 179.73079 * 11 10 6 13 13 H 1.07996 * 120.00012 * 151.25241 * 12 11 10 14 14 C 1.40323 * 120.00088 * 330.96925 * 12 11 10 15 15 N 1.30583 * 120.00394 * 161.43302 * 14 12 11 16 16 Si 1.86804 * 119.99788 * 341.44005 * 14 12 11 17 17 H 1.48497 * 109.47352 * 95.33045 * 16 14 12 18 18 H 1.48502 * 109.47149 * 215.32872 * 16 14 12 19 19 H 1.48505 * 109.47241 * 335.32796 * 16 14 12 20 20 H 1.07992 * 119.61197 * 0.03768 * 4 3 2 21 21 H 1.08997 * 109.46666 * 0.02562 * 7 6 5 22 22 H 1.08006 * 120.49350 * 180.31555 * 10 6 5 23 23 H 0.97000 * 120.00634 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2809 -0.3301 1.1520 5 7 4.5973 -0.3293 1.1530 6 6 5.3087 -0.0212 0.0822 7 6 6.8133 -0.0442 0.1645 8 9 7.3167 -0.9673 -0.7583 9 9 7.3159 1.2284 -0.1271 10 6 4.7044 0.3139 -1.1078 11 6 3.2956 0.3386 -1.1765 12 6 2.6306 0.6810 -2.3709 13 1 1.6512 0.2761 -2.5788 14 6 3.2383 1.5528 -3.2872 15 7 2.8219 1.5940 -4.5242 16 14 4.6433 2.6543 -2.7376 17 1 5.9383 1.9996 -3.0531 18 1 4.5600 3.9551 -3.4492 19 1 4.5486 2.8841 -1.2735 20 1 2.7468 -0.5901 2.0539 21 1 7.1177 -0.3336 1.1704 22 1 5.2998 0.5582 -1.9752 23 1 3.2418 2.1968 -5.1575 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238641003.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:09 Heat of formation + Delta-G solvation = -73.464852 kcal Electronic energy + Delta-G solvation = -14558.942915 eV Core-core repulsion = 11620.631375 eV Total energy + Delta-G solvation = -2938.311540 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 224.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.96482 -47.96438 -40.78050 -37.36708 -36.28400 -33.72329 -32.88825 -28.66370 -27.55938 -24.47284 -23.15328 -20.05856 -19.62313 -18.53019 -18.21028 -17.97927 -17.19083 -16.43381 -15.66875 -15.33548 -15.14824 -14.83878 -14.64332 -14.35507 -13.93274 -13.90075 -13.73549 -13.60678 -13.09260 -12.91485 -12.82352 -12.24176 -11.82616 -11.46054 -10.45224 -10.29849 -9.98336 -9.26192 -7.02185 -0.21833 0.54064 1.20485 1.30358 1.39315 1.88515 1.93616 2.05532 2.43183 2.55723 3.21606 3.23993 3.40649 3.72486 3.98186 4.12393 4.29928 4.42083 4.78715 4.81646 5.00173 5.27437 5.71115 5.84412 6.13585 6.32282 6.74530 7.13568 7.78267 Molecular weight = 224.05amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.015199 C = 0.009683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.201436 B = 1841.779283 C = 2890.853467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C 0.307 3.693 3 C -0.210 4.210 4 C 0.202 3.798 5 N -0.546 5.546 6 C 0.079 3.921 7 C 0.323 3.677 8 F -0.203 7.203 9 F -0.205 7.205 10 C -0.247 4.247 11 C 0.123 3.877 12 C -0.434 4.434 13 H 0.070 0.930 14 C 0.058 3.942 15 N -0.792 5.792 16 Si 0.950 3.050 17 H -0.247 1.247 18 H -0.261 1.261 19 H -0.247 1.247 20 H 0.186 0.814 21 H 0.168 0.832 22 H 0.119 0.881 23 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.350 0.172 6.185 11.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.004 4.004 3 C -0.219 4.219 4 C 0.041 3.959 5 N -0.260 5.260 6 C -0.052 4.052 7 C 0.269 3.731 8 F -0.185 7.185 9 F -0.187 7.187 10 C -0.269 4.269 11 C 0.113 3.887 12 C -0.462 4.462 13 H 0.088 0.912 14 C -0.166 4.166 15 N -0.414 5.414 16 Si 0.771 3.229 17 H -0.171 1.171 18 H -0.186 1.186 19 H -0.170 1.170 20 H 0.203 0.797 21 H 0.185 0.815 22 H 0.137 0.863 23 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.067 0.035 6.599 10.423 hybrid contribution 0.007 0.631 -1.492 1.620 sum 8.074 0.666 5.107 9.577 Atomic orbital electron populations 1.81063 1.12974 1.13925 1.10191 1.25500 0.92417 0.91174 0.91340 1.17064 0.84579 1.23283 0.97022 1.22724 0.88817 0.88836 0.95571 1.67211 1.07608 1.23199 1.27941 1.21366 0.95878 0.97370 0.90557 1.20485 0.86367 0.72449 0.93795 1.92985 1.88256 1.66444 1.70790 1.92973 1.88294 1.42156 1.95258 1.21736 0.94558 1.11462 0.99189 1.17736 0.91426 0.88305 0.91193 1.19657 1.03851 1.23016 0.99716 0.91216 1.26996 0.99080 0.97266 0.93252 1.69540 1.37638 1.30155 1.04088 0.85694 0.77988 0.77950 0.81277 1.17146 1.18647 1.17032 0.79670 0.81472 0.86344 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.74 18.54 19.00 0.35 -22.39 14 2 C 0.31 13.26 14.30 88.33 1.26 14.52 14 3 C -0.21 -8.68 5.81 -20.70 -0.12 -8.80 14 4 C 0.20 6.94 10.92 85.02 0.93 7.87 14 5 N -0.55 -19.09 10.19 -183.29 -1.87 -20.95 14 6 C 0.08 2.90 6.27 42.36 0.27 3.16 14 7 C 0.32 9.66 5.53 71.24 0.39 10.05 14 8 F -0.20 -6.47 17.24 44.97 0.78 -5.69 14 9 F -0.21 -6.56 17.24 44.97 0.78 -5.79 14 10 C -0.25 -10.40 6.77 22.82 0.15 -10.24 14 11 C 0.12 5.60 5.16 -20.89 -0.11 5.50 14 12 C -0.43 -21.83 9.04 23.44 0.21 -21.62 14 13 H 0.07 3.88 7.60 -2.91 -0.02 3.85 14 14 C 0.06 2.75 5.43 85.39 0.46 3.22 14 15 N -0.79 -38.34 13.92 21.89 0.30 -38.04 14 16 Si 0.95 37.69 24.55 68.60 1.68 39.38 14 17 H -0.25 -9.34 6.70 99.48 0.67 -8.68 14 18 H -0.26 -9.57 7.11 99.48 0.71 -8.86 14 19 H -0.25 -10.08 6.86 99.48 0.68 -9.40 14 20 H 0.19 4.86 8.06 -2.91 -0.02 4.83 14 21 H 0.17 3.62 8.10 -2.39 -0.02 3.60 14 22 H 0.12 5.02 4.77 -2.91 -0.01 5.01 14 23 H 0.31 13.14 8.29 -92.71 -0.77 12.37 14 Total: -1.00 -53.80 228.39 6.68 -47.11 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: 1.21 Total: 2.72 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 3.45 Total: 3.65 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -1.21 Total: -81.38 kcal Atomic # 9 Polarization: -13.03 SS G_CDS: 1.55 Total: -11.48 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 1.68 Total: 39.38 kcal Total: -53.80 6.68 -47.11 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238641003.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.354 kcal (2) G-P(sol) polarization free energy of solvation -53.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds