Wall clock time and date at job start Mon Mar 30 2020 02:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39939 * 119.61591 * 161.80372 * 3 2 1 5 5 C 1.38779 * 119.44271 * 179.72336 * 4 3 2 6 6 C 1.50700 * 120.65072 * 180.27595 * 5 4 3 7 7 F 1.39899 * 109.47052 * 120.00258 * 6 5 4 8 8 F 1.39900 * 109.47193 * 240.00113 * 6 5 4 9 9 C 1.38200 * 118.69032 * 0.25223 * 5 4 3 10 10 C 1.40804 * 119.20465 * 0.02562 * 9 5 4 11 11 C 1.41439 * 119.75675 * 179.97438 * 10 9 5 12 12 H 1.07999 * 120.00292 * 353.69345 * 11 10 9 13 13 C 1.40024 * 119.99741 * 173.69646 * 11 10 9 14 14 N 1.30732 * 120.00248 * 6.28799 * 13 11 10 15 15 Si 1.86800 * 119.99763 * 186.29322 * 13 11 10 16 16 H 1.48499 * 109.47251 * 94.98154 * 15 13 11 17 17 H 1.48499 * 109.47102 * 214.98044 * 15 13 11 18 18 H 1.48500 * 109.47245 * 334.98006 * 15 13 11 19 19 N 1.32359 * 119.61813 * 342.03046 * 3 2 1 20 20 H 1.07995 * 120.27204 * 0.02562 * 4 3 2 21 21 H 1.09004 * 109.47495 * 359.97438 * 6 5 4 22 22 H 1.08002 * 120.39866 * 180.02562 * 9 5 4 23 23 H 0.97008 * 120.00041 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2590 1.1567 -0.3799 5 6 4.6468 1.1551 -0.3731 6 6 5.4184 2.3869 -0.7711 7 9 6.2187 2.8018 0.2987 8 9 6.2286 2.0937 -1.8733 9 6 5.3071 0.0020 0.0065 10 6 4.5557 -1.1312 0.3724 11 6 5.2195 -2.3178 0.7622 12 1 6.2942 -2.3867 0.6816 13 6 4.4831 -3.4031 1.2527 14 7 3.1764 -3.3675 1.2358 15 14 5.3680 -4.9017 1.9312 16 1 5.4945 -4.7765 3.4055 17 1 4.5927 -6.1250 1.6031 18 1 6.7202 -4.9951 1.3245 19 7 3.2226 -1.0936 0.3550 20 1 2.7168 2.0441 -0.6712 21 1 4.7217 3.1829 -1.0343 22 1 6.3865 -0.0297 0.0222 23 1 2.6663 -4.1193 1.5759 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238645085.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:14 Heat of formation + Delta-G solvation = -45.008258 kcal Electronic energy + Delta-G solvation = -14238.101503 eV Core-core repulsion = 11301.023933 eV Total energy + Delta-G solvation = -2937.077570 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 224.046 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.54336 -46.54111 -38.78531 -35.76727 -34.03206 -32.01546 -30.62220 -26.36112 -25.82593 -23.28646 -21.40155 -18.44880 -17.32223 -16.98378 -16.76934 -15.52231 -15.14848 -14.77245 -14.50718 -13.58393 -13.39678 -13.32610 -12.93754 -12.56352 -12.32645 -11.96255 -11.92396 -11.59306 -11.32602 -11.17149 -10.84698 -10.72583 -10.24226 -9.66367 -8.78180 -8.16372 -8.06131 -6.75766 -4.86939 1.81262 2.29212 2.93426 2.97408 3.00769 3.34276 3.72522 3.75779 4.17556 4.50851 4.52181 4.82335 5.10607 5.33360 5.62344 5.93521 6.22178 6.33289 6.56699 6.87428 6.94491 7.09903 7.36135 7.86372 8.12768 8.25670 8.49608 9.50650 9.98618 Molecular weight = 224.05amu Principal moments of inertia in cm(-1) A = 0.022642 B = 0.010138 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.362824 B = 2761.107887 C = 3820.806763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.299 3.701 3 C 0.211 3.789 4 C -0.250 4.250 5 C -0.106 4.106 6 C 0.316 3.684 7 F -0.205 7.205 8 F -0.205 7.205 9 C -0.201 4.201 10 C 0.249 3.751 11 C -0.409 4.409 12 H 0.095 0.905 13 C 0.064 3.936 14 N -0.706 5.706 15 Si 0.915 3.085 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.258 1.258 19 N -0.443 5.443 20 H 0.112 0.888 21 H 0.111 0.889 22 H 0.115 0.885 23 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.408 4.503 -1.324 6.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.017 4.017 3 C 0.064 3.936 4 C -0.277 4.277 5 C -0.112 4.112 6 C 0.263 3.737 7 F -0.186 7.186 8 F -0.186 7.186 9 C -0.225 4.225 10 C 0.124 3.876 11 C -0.440 4.440 12 H 0.113 0.887 13 C -0.164 4.164 14 N -0.326 5.326 15 Si 0.739 3.261 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.182 1.182 19 N -0.158 5.158 20 H 0.130 0.870 21 H 0.129 0.871 22 H 0.133 0.867 23 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.084 3.587 -1.024 4.273 hybrid contribution 1.336 0.067 0.090 1.341 sum 3.420 3.654 -0.934 5.091 Atomic orbital electron populations 1.81058 1.12214 1.09441 1.09638 1.25547 0.92305 0.91538 0.92341 1.16484 0.85386 0.91950 0.99735 1.20682 0.92580 0.98903 1.15531 1.19921 0.93905 0.94551 1.02845 1.20379 0.84155 0.95646 0.73533 1.92973 1.76718 1.91346 1.57583 1.92973 1.76205 1.95000 1.54456 1.21802 0.99756 0.93661 1.07318 1.18445 0.86660 0.92221 0.90225 1.19779 0.95218 0.95470 1.33503 0.88708 1.26152 0.94911 1.00303 0.94986 1.70070 1.06455 1.29251 1.26815 0.86165 0.80428 0.79653 0.79898 1.19167 1.19871 1.18165 1.68749 1.09362 1.22036 1.15618 0.86951 0.87138 0.86722 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.78 18.54 41.84 0.78 -9.00 14 2 C 0.30 6.52 15.52 -22.48 -0.35 6.17 14 3 C 0.21 4.73 6.59 -85.08 -0.56 4.17 14 4 C -0.25 -4.86 9.45 -38.74 -0.37 -5.23 14 5 C -0.11 -2.06 5.39 -104.44 -0.56 -2.62 14 6 C 0.32 5.03 5.48 36.01 0.20 5.23 14 7 F -0.20 -3.46 17.27 2.25 0.04 -3.42 14 8 F -0.21 -3.45 17.27 2.25 0.04 -3.42 14 9 C -0.20 -4.36 9.44 -38.63 -0.36 -4.72 14 10 C 0.25 6.11 6.55 -85.01 -0.56 5.56 14 11 C -0.41 -9.81 9.14 -37.69 -0.34 -10.16 14 12 H 0.09 2.08 7.85 -52.49 -0.41 1.67 14 13 C 0.06 1.48 5.49 -17.35 -0.10 1.38 14 14 N -0.71 -17.52 11.49 55.55 0.64 -16.89 14 15 Si 0.92 17.09 29.56 -169.99 -5.03 12.06 14 16 H -0.27 -4.96 7.11 56.52 0.40 -4.56 14 17 H -0.27 -5.07 7.11 56.52 0.40 -4.67 14 18 H -0.26 -4.69 7.11 56.52 0.40 -4.29 14 19 N -0.44 -11.19 7.80 -9.06 -0.07 -11.26 14 20 H 0.11 1.81 8.00 -52.49 -0.42 1.39 14 21 H 0.11 1.33 7.94 -51.93 -0.41 0.92 14 22 H 0.11 2.34 8.06 -52.49 -0.42 1.92 14 23 H 0.28 6.33 8.29 -40.82 -0.34 6.00 14 LS Contribution 236.44 15.07 3.56 3.56 Total: -1.00 -26.35 236.44 -3.84 -30.19 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: -0.80 Total: -1.62 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -3.00 Total: -0.21 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 1.34 Total: -37.14 kcal Atomic # 9 Polarization: -6.91 SS G_CDS: 0.08 Total: -6.83 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -26.35 -3.84 -30.19 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238645085.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.818 kcal (2) G-P(sol) polarization free energy of solvation -26.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds