Wall clock time and date at job start Mon Mar 30 2020 02:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39939 * 119.61591 * 161.80372 * 3 2 1 5 5 C 1.38779 * 119.44271 * 179.72336 * 4 3 2 6 6 C 1.50700 * 120.65072 * 180.27595 * 5 4 3 7 7 F 1.39899 * 109.47052 * 120.00258 * 6 5 4 8 8 F 1.39900 * 109.47193 * 240.00113 * 6 5 4 9 9 C 1.38200 * 118.69032 * 0.25223 * 5 4 3 10 10 C 1.40804 * 119.20465 * 0.02562 * 9 5 4 11 11 C 1.41439 * 119.75675 * 179.97438 * 10 9 5 12 12 H 1.07999 * 120.00292 * 353.69345 * 11 10 9 13 13 C 1.40024 * 119.99741 * 173.69646 * 11 10 9 14 14 N 1.30732 * 120.00248 * 6.28799 * 13 11 10 15 15 Si 1.86800 * 119.99763 * 186.29322 * 13 11 10 16 16 H 1.48499 * 109.47251 * 94.98154 * 15 13 11 17 17 H 1.48499 * 109.47102 * 214.98044 * 15 13 11 18 18 H 1.48500 * 109.47245 * 334.98006 * 15 13 11 19 19 N 1.32359 * 119.61813 * 342.03046 * 3 2 1 20 20 H 1.07995 * 120.27204 * 0.02562 * 4 3 2 21 21 H 1.09004 * 109.47495 * 359.97438 * 6 5 4 22 22 H 1.08002 * 120.39866 * 180.02562 * 9 5 4 23 23 H 0.97008 * 120.00041 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2590 1.1567 -0.3799 5 6 4.6468 1.1551 -0.3731 6 6 5.4184 2.3869 -0.7711 7 9 6.2187 2.8018 0.2987 8 9 6.2286 2.0937 -1.8733 9 6 5.3071 0.0020 0.0065 10 6 4.5557 -1.1312 0.3724 11 6 5.2195 -2.3178 0.7622 12 1 6.2942 -2.3867 0.6816 13 6 4.4831 -3.4031 1.2527 14 7 3.1764 -3.3675 1.2358 15 14 5.3680 -4.9017 1.9312 16 1 5.4945 -4.7765 3.4055 17 1 4.5927 -6.1250 1.6031 18 1 6.7202 -4.9951 1.3245 19 7 3.2226 -1.0936 0.3550 20 1 2.7168 2.0441 -0.6712 21 1 4.7217 3.1829 -1.0343 22 1 6.3865 -0.0297 0.0222 23 1 2.6663 -4.1193 1.5759 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238645085.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:14 Heat of formation + Delta-G solvation = -59.510716 kcal Electronic energy + Delta-G solvation = -14238.730377 eV Core-core repulsion = 11301.023933 eV Total energy + Delta-G solvation = -2937.706444 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 224.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.83101 -47.83427 -40.49357 -37.50455 -35.72107 -33.66413 -32.34801 -28.07124 -27.30553 -24.94374 -23.04084 -20.01338 -19.07550 -18.31575 -18.05696 -17.02026 -16.76871 -16.36179 -16.17785 -15.26466 -14.91418 -14.76058 -14.23069 -14.22425 -13.90931 -13.67175 -13.50021 -13.14432 -12.89019 -12.79062 -12.46728 -12.10463 -11.76732 -11.31421 -10.48068 -9.89235 -9.79087 -8.45534 -6.65199 0.09513 0.66350 1.43480 1.45852 1.57847 1.60376 2.01531 2.20348 2.72418 2.80524 3.09052 3.41179 3.66334 3.87626 4.25145 4.38764 4.57024 4.64985 4.92285 5.17348 5.25288 5.46623 5.71777 6.11046 6.39197 6.53683 6.74422 7.78307 8.31750 Molecular weight = 224.05amu Principal moments of inertia in cm(-1) A = 0.022642 B = 0.010138 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.362824 B = 2761.107887 C = 3820.806763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.304 3.696 3 C 0.186 3.814 4 C -0.222 4.222 5 C -0.108 4.108 6 C 0.322 3.678 7 F -0.210 7.210 8 F -0.210 7.210 9 C -0.211 4.211 10 C 0.224 3.776 11 C -0.447 4.447 12 H 0.103 0.897 13 C 0.025 3.975 14 N -0.753 5.753 15 Si 0.988 3.012 16 H -0.264 1.264 17 H -0.272 1.272 18 H -0.249 1.249 19 N -0.481 5.481 20 H 0.156 0.844 21 H 0.165 0.835 22 H 0.121 0.879 23 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.030 5.800 -1.688 7.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.012 4.012 3 C 0.042 3.958 4 C -0.248 4.248 5 C -0.115 4.115 6 C 0.268 3.732 7 F -0.192 7.192 8 F -0.192 7.192 9 C -0.235 4.235 10 C 0.099 3.901 11 C -0.477 4.477 12 H 0.121 0.879 13 C -0.198 4.198 14 N -0.374 5.374 15 Si 0.808 3.192 16 H -0.189 1.189 17 H -0.197 1.197 18 H -0.172 1.172 19 N -0.197 5.197 20 H 0.174 0.826 21 H 0.182 0.818 22 H 0.139 0.861 23 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.697 4.916 -1.402 5.780 hybrid contribution 1.123 -0.175 0.143 1.146 sum 3.820 4.741 -1.260 6.217 Atomic orbital electron populations 1.81053 1.12277 1.09657 1.10008 1.25541 0.92222 0.91348 0.92090 1.16773 0.85606 0.92703 1.00764 1.21133 0.92748 0.99029 1.11901 1.20393 0.94348 0.95414 1.01301 1.20679 0.84359 0.95106 0.73011 1.92969 1.76972 1.91155 1.58057 1.92969 1.76461 1.95110 1.54615 1.21962 1.00178 0.94024 1.07381 1.18820 0.86913 0.93519 0.90859 1.20127 0.95861 0.96395 1.35350 0.87862 1.27011 0.95358 1.02864 0.94533 1.70173 1.08075 1.30412 1.28788 0.85080 0.79374 0.75708 0.78991 1.18922 1.19686 1.17214 1.68647 1.10088 1.23842 1.17083 0.82593 0.81770 0.86066 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -19.47 18.54 19.00 0.35 -19.12 14 2 C 0.30 13.04 15.52 88.33 1.37 14.41 14 3 C 0.19 8.21 6.59 40.72 0.27 8.48 14 4 C -0.22 -7.96 9.45 22.81 0.22 -7.75 14 5 C -0.11 -3.91 5.39 -19.74 -0.11 -4.01 14 6 C 0.32 8.93 5.48 71.24 0.39 9.32 14 7 F -0.21 -6.41 17.27 44.97 0.78 -5.63 14 8 F -0.21 -6.40 17.27 44.97 0.78 -5.63 14 9 C -0.21 -9.03 9.44 22.89 0.22 -8.82 14 10 C 0.22 11.18 6.55 40.33 0.26 11.45 14 11 C -0.45 -21.91 9.14 23.49 0.21 -21.69 14 12 H 0.10 4.63 7.85 -2.91 -0.02 4.61 14 13 C 0.03 1.19 5.49 85.29 0.47 1.65 14 14 N -0.75 -38.62 11.49 21.84 0.25 -38.37 14 15 Si 0.99 35.47 29.56 68.60 2.03 37.50 14 16 H -0.26 -9.29 7.11 99.48 0.71 -8.58 14 17 H -0.27 -9.55 7.11 99.48 0.71 -8.85 14 18 H -0.25 -8.44 7.11 99.48 0.71 -7.73 14 19 N -0.48 -24.69 7.80 -182.59 -1.42 -26.11 14 20 H 0.16 4.21 8.00 -2.91 -0.02 4.18 14 21 H 0.17 2.94 7.94 -2.39 -0.02 2.92 14 22 H 0.12 4.89 8.06 -2.91 -0.02 4.87 14 23 H 0.28 13.24 8.29 -92.70 -0.77 12.47 14 Total: -1.00 -57.74 236.44 7.33 -50.42 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: 1.26 Total: 3.89 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 3.30 Total: 3.04 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -0.82 Total: -83.59 kcal Atomic # 9 Polarization: -12.81 SS G_CDS: 1.55 Total: -11.26 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.50 kcal Total: -57.74 7.33 -50.42 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238645085.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.095 kcal (2) G-P(sol) polarization free energy of solvation -57.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds