Wall clock time and date at job start Mon Mar 30 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86810 * 119.99672 * 2 1 4 4 H 1.48494 * 109.46783 * 239.99536 * 3 2 1 5 5 H 1.48495 * 109.46931 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46731 * 119.99989 * 3 2 1 7 7 C 1.39929 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99371 * 202.27863 * 7 2 1 9 9 C 1.41333 * 120.00021 * 22.55555 * 7 2 1 10 10 C 1.40212 * 120.26581 * 37.95204 * 9 7 2 11 11 C 1.38203 * 120.63482 * 180.60160 * 10 9 7 12 12 C 1.39811 * 119.04829 * 359.34667 * 11 10 9 13 13 C 1.38233 * 120.79947 * 0.32245 * 12 11 10 14 14 C 1.37846 * 120.61069 * 359.77551 * 13 12 11 15 15 Cl 1.73601 * 120.28355 * 180.16474 * 14 13 12 16 16 O 1.36221 * 111.27788 * 179.19329 * 11 10 9 17 17 C 1.43783 * 109.20867 * 19.14907 * 16 11 10 18 18 C 1.51609 * 132.16060 * 1.17092 * 10 9 7 19 19 H 0.96999 * 119.99754 * 0.93582 * 1 2 3 20 20 H 1.07995 * 119.60012 * 180.30989 * 12 11 10 21 21 H 1.07993 * 119.69650 * 180.08263 * 13 12 11 22 22 H 1.09005 * 110.76986 * 90.57664 * 17 16 11 23 23 H 1.08995 * 110.77474 * 213.80210 * 17 16 11 24 24 H 1.09003 * 110.94111 * 282.39550 * 18 10 9 25 25 H 1.08991 * 110.94668 * 46.09887 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6179 0.0000 4 1 3.0962 1.6965 -1.2124 5 1 1.2773 2.7465 -0.0006 6 1 3.0961 1.6965 1.2126 7 6 2.0081 -1.2118 0.0005 8 1 3.0276 -1.2465 0.3552 9 6 1.3825 -2.3892 -0.4684 10 6 0.5218 -2.3397 -1.5741 11 6 -0.1036 -3.4842 -2.0315 12 6 0.1444 -4.6982 -1.3840 13 6 0.9964 -4.7597 -0.2972 14 6 1.6235 -3.6238 0.1681 15 17 2.6952 -3.7115 1.5310 16 8 -0.9065 -3.2159 -3.0987 17 6 -0.5157 -1.9607 -3.6811 18 6 0.0882 -1.2009 -2.4761 19 1 -0.4850 0.8399 -0.0137 20 1 -0.3357 -5.5989 -1.7371 21 1 1.1763 -5.7072 0.1887 22 1 0.2341 -2.1117 -4.4578 23 1 -1.3820 -1.4329 -4.0796 24 1 -0.6654 -0.5826 -1.9880 25 1 0.9438 -0.5998 -2.7835 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258033214.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:37 Heat of formation + Delta-G solvation = -41.215709 kcal Electronic energy + Delta-G solvation = -13221.843769 eV Core-core repulsion = 10804.434586 eV Total energy + Delta-G solvation = -2417.409183 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.034 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.52598 -38.25550 -36.59599 -35.59232 -32.70563 -31.13096 -29.85224 -26.98363 -24.00088 -22.43579 -22.25530 -19.27211 -17.76942 -17.12264 -16.95655 -16.78053 -16.21884 -14.79464 -14.53501 -14.09519 -13.85674 -13.58096 -13.29122 -13.12300 -12.81527 -12.39487 -12.34186 -12.19752 -12.12364 -11.78393 -11.24350 -11.01251 -10.73640 -9.27554 -8.68531 -8.63381 -6.42819 0.76113 0.89307 1.39998 1.46605 1.50910 1.82930 2.22494 2.59740 2.71367 3.38480 4.01339 4.15895 4.33751 4.48658 4.56645 4.67941 4.89234 5.16983 5.19993 5.23307 5.45230 5.60088 5.71607 5.85628 5.93522 6.30749 6.61467 6.80212 6.88790 8.32741 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.020694 B = 0.016367 C = 0.009650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.723634 B = 1710.356623 C = 2900.810435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.050 3.950 3 Si 0.962 3.038 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.484 4.484 8 H 0.079 0.921 9 C 0.128 3.872 10 C -0.228 4.228 11 C 0.101 3.899 12 C -0.240 4.240 13 C -0.057 4.057 14 C -0.161 4.161 15 Cl -0.098 7.098 16 O -0.329 6.329 17 C 0.050 3.950 18 C -0.081 4.081 19 H 0.290 0.710 20 H 0.129 0.871 21 H 0.139 0.861 22 H 0.081 0.919 23 H 0.122 0.878 24 H 0.080 0.920 25 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 -0.136 -3.634 3.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.166 4.166 3 Si 0.784 3.216 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.513 4.513 8 H 0.097 0.903 9 C 0.125 3.875 10 C -0.231 4.231 11 C 0.056 3.944 12 C -0.260 4.260 13 C -0.076 4.076 14 C -0.188 4.188 15 Cl -0.070 7.070 16 O -0.244 6.244 17 C -0.024 4.024 18 C -0.118 4.118 19 H 0.100 0.900 20 H 0.147 0.853 21 H 0.157 0.843 22 H 0.100 0.900 23 H 0.140 0.860 24 H 0.098 0.902 25 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.370 -0.114 -3.584 3.605 hybrid contribution 0.456 0.821 0.373 1.011 sum 0.826 0.707 -3.211 3.390 Atomic orbital electron populations 1.69897 1.08829 1.30774 1.33727 1.26402 0.95080 1.03365 0.91778 0.85538 0.79258 0.76780 0.80036 1.18379 1.19090 1.18975 1.19530 1.00258 0.92550 1.38951 0.90307 1.16874 0.89782 0.91919 0.88926 1.20661 1.07931 0.93952 1.00556 1.19755 0.90979 0.95083 0.88578 1.19781 1.08952 0.94828 1.02393 1.20459 0.95097 0.96831 0.95190 1.21022 1.05777 0.96210 0.95839 1.98194 1.65217 1.98516 1.45033 1.86660 1.53483 1.41362 1.42939 1.24022 1.01244 0.81800 0.95382 1.21562 1.00261 0.96670 0.93315 0.89979 0.85310 0.84348 0.90040 0.85991 0.90186 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.93 10.32 21.82 0.23 -39.71 15 2 C 0.05 2.42 4.45 85.25 0.38 2.80 15 3 Si 0.96 36.87 29.61 68.60 2.03 38.91 15 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 5 H -0.27 -9.62 7.11 99.48 0.71 -8.91 15 6 H -0.27 -10.14 7.11 99.48 0.71 -9.44 15 7 C -0.48 -25.03 8.20 23.44 0.19 -24.84 15 8 H 0.08 4.06 7.56 -2.91 -0.02 4.04 15 9 C 0.13 6.68 5.36 -21.37 -0.11 6.56 15 10 C -0.23 -11.31 5.50 -19.10 -0.11 -11.42 15 11 C 0.10 4.72 7.03 22.64 0.16 4.88 15 12 C -0.24 -10.42 10.07 22.65 0.23 -10.19 15 13 C -0.06 -2.46 9.78 22.18 0.22 -2.24 15 14 C -0.16 -7.75 6.38 22.85 0.15 -7.61 15 15 Cl -0.10 -4.24 27.84 -2.72 -0.08 -4.31 15 16 O -0.33 -14.01 11.11 -96.07 -1.07 -15.08 15 17 C 0.05 1.75 8.02 72.57 0.58 2.34 15 18 C -0.08 -3.47 5.37 30.73 0.16 -3.30 15 19 H 0.29 12.99 8.30 -92.71 -0.77 12.22 15 20 H 0.13 4.84 8.06 -2.91 -0.02 4.82 15 21 H 0.14 5.02 8.06 -2.91 -0.02 5.00 15 22 H 0.08 2.51 8.14 -2.38 -0.02 2.49 15 23 H 0.12 3.41 8.14 -2.39 -0.02 3.39 15 24 H 0.08 3.61 6.40 -2.39 -0.02 3.59 15 25 H 0.07 2.75 8.14 -2.39 -0.02 2.73 15 Total: -1.00 -56.46 233.15 4.17 -52.29 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.21 Total: 10.93 kcal Atomic # 6 Polarization: -44.88 SS G_CDS: 1.85 Total: -43.03 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.23 Total: -39.71 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -1.07 Total: -15.08 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.91 kcal Atomic # 17 Polarization: -4.24 SS G_CDS: -0.08 Total: -4.31 kcal Total: -56.46 4.17 -52.29 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258033214.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.078 kcal (2) G-P(sol) polarization free energy of solvation -56.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds