Wall clock time and date at job start Mon Mar 30 2020 03:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76197 * 100.00072 * 2 1 4 4 C 1.38707 * 120.21385 * 0.02562 * 3 2 1 5 5 C 1.38220 * 120.29123 * 179.74424 * 4 3 2 6 6 C 1.38686 * 120.71904 * 0.27812 * 5 4 3 7 7 C 1.50703 * 119.79307 * 179.97438 * 6 5 4 8 8 C 1.38086 * 120.41769 * 359.95132 * 6 5 4 9 9 O 1.35720 * 120.15446 * 180.02562 * 8 6 5 10 10 C 1.41310 * 119.69023 * 0.02562 * 8 6 5 11 11 C 1.40845 * 120.34295 * 179.97438 * 10 8 6 12 12 H 1.07999 * 119.99344 * 141.96801 * 11 10 8 13 13 C 1.39887 * 120.00407 * 321.97021 * 11 10 8 14 14 N 1.30944 * 119.99603 * 337.93777 * 13 11 10 15 15 Si 1.86799 * 120.00097 * 157.94137 * 13 11 10 16 16 H 1.48500 * 109.46911 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47334 * 119.99755 * 15 13 11 18 18 H 1.48498 * 109.46765 * 239.99730 * 15 13 11 19 19 H 1.08994 * 109.47011 * 59.99787 * 1 2 3 20 20 H 1.08996 * 109.46935 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46953 * 300.00240 * 1 2 3 22 22 H 1.08000 * 119.85323 * 0.02562 * 4 3 2 23 23 H 1.07997 * 119.63667 * 180.25066 * 5 4 3 24 24 H 1.08996 * 109.47303 * 89.99077 * 7 6 5 25 25 H 1.08996 * 109.47105 * 210.00055 * 7 6 5 26 26 H 1.09007 * 109.46847 * 329.99746 * 7 6 5 27 27 H 0.96706 * 113.99337 * 90.00122 * 9 8 6 28 28 H 0.97003 * 119.99740 * 178.70156 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 1.0568 2.6308 0.0005 5 6 1.2949 3.9923 0.0059 6 6 2.5915 4.4847 0.0050 7 6 2.8271 5.9732 0.0103 8 6 3.6678 3.6197 -0.0003 9 8 4.9344 4.1074 -0.0006 10 6 3.4444 2.2244 -0.0053 11 6 4.5322 1.3297 -0.0112 12 1 4.4824 0.4154 0.5616 13 6 5.6769 1.6252 -0.7589 14 7 5.6046 2.4613 -1.7640 15 14 7.3087 0.8270 -0.3235 16 1 7.1243 -0.0710 0.8448 17 1 7.7987 0.0382 -1.4823 18 1 8.3003 1.8797 0.0135 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 0.0415 2.2626 0.0014 23 1 0.4623 4.6801 0.0103 24 1 2.8860 6.3281 1.0391 25 1 3.7618 6.1948 -0.5047 26 1 2.0037 6.4732 -0.4999 27 1 5.3029 4.2453 0.8828 28 1 6.4021 2.6807 -2.2707 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258047779.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:59 Heat of formation + Delta-G solvation = -30.050483 kcal Electronic energy + Delta-G solvation = -13354.366033 eV Core-core repulsion = 11075.317811 eV Total energy + Delta-G solvation = -2279.048222 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.26931 -35.03270 -33.66720 -31.36546 -29.64710 -28.02131 -25.61446 -25.13653 -20.99243 -20.12761 -17.50124 -16.79789 -15.36800 -15.02914 -14.43781 -14.36423 -13.57085 -13.14606 -13.04263 -12.55218 -12.37704 -11.86174 -11.69808 -11.47588 -11.16766 -11.08806 -10.92448 -10.46812 -10.40291 -10.00745 -9.45701 -9.02989 -8.64854 -8.17488 -7.20813 -6.74477 -6.25408 -4.30767 2.58709 2.73171 2.77449 3.14273 3.17017 3.20099 3.62168 4.02417 4.57895 5.31304 5.61398 5.63801 5.78025 5.89999 6.08844 6.14609 6.30924 6.35714 6.45858 6.65163 7.10011 7.23376 7.33856 7.52096 7.64599 7.92183 8.04159 8.39981 8.67685 8.87213 9.28921 10.28327 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.021762 B = 0.014383 C = 0.009080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.358061 B = 1946.288591 C = 3082.893856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S -0.118 6.118 3 C -0.187 4.187 4 C -0.102 4.102 5 C -0.213 4.213 6 C -0.097 4.097 7 C -0.099 4.099 8 C 0.055 3.945 9 O -0.466 6.466 10 C 0.124 3.876 11 C -0.467 4.467 12 H 0.084 0.916 13 C 0.095 3.905 14 N -0.748 5.748 15 Si 0.897 3.103 16 H -0.261 1.261 17 H -0.276 1.276 18 H -0.272 1.272 19 H 0.072 0.928 20 H 0.087 0.913 21 H 0.071 0.929 22 H 0.096 0.904 23 H 0.094 0.906 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.348 0.652 28 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 0.606 3.181 4.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 S 0.121 5.879 3 C -0.300 4.300 4 C -0.126 4.126 5 C -0.234 4.234 6 C -0.100 4.100 7 C -0.156 4.156 8 C 0.007 3.993 9 O -0.271 6.271 10 C 0.117 3.883 11 C -0.496 4.496 12 H 0.102 0.898 13 C -0.128 4.128 14 N -0.369 5.369 15 Si 0.722 3.278 16 H -0.185 1.185 17 H -0.202 1.202 18 H -0.198 1.198 19 H 0.091 0.909 20 H 0.106 0.894 21 H 0.090 0.910 22 H 0.114 0.886 23 H 0.112 0.888 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.199 0.801 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.569 -0.366 2.329 3.486 hybrid contribution -0.092 0.880 0.544 1.038 sum -2.661 0.514 2.872 3.949 Atomic orbital electron populations 1.23551 0.99562 1.04860 1.04407 1.85238 1.01480 1.06770 1.94392 1.21463 0.96115 0.93456 1.18944 1.20590 0.96047 0.93434 1.02542 1.19936 0.94617 0.93893 1.14992 1.19772 0.93310 0.94447 1.02426 1.20534 1.01490 0.93213 1.00386 1.18113 0.82699 0.90191 1.08292 1.84931 1.27318 1.85453 1.29441 1.17461 0.90172 0.91666 0.88967 1.19193 0.98538 1.05781 1.26068 0.89837 1.25668 1.00001 0.94027 0.93144 1.69800 1.30810 1.25049 1.11284 0.86446 0.81935 0.79797 0.79651 1.18492 1.20193 1.19756 0.90909 0.89427 0.91018 0.88617 0.88823 0.93081 0.91850 0.93190 0.80092 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 8.98 101.05 0.91 -1.64 15 2 S -0.12 -2.55 21.45 -107.50 -2.31 -4.86 15 3 C -0.19 -4.60 6.18 -38.14 -0.24 -4.84 15 4 C -0.10 -2.30 9.17 -39.41 -0.36 -2.67 15 5 C -0.21 -4.72 9.67 -39.42 -0.38 -5.10 15 6 C -0.10 -2.23 5.89 -104.51 -0.62 -2.84 15 7 C -0.10 -1.87 9.77 36.01 0.35 -1.51 15 8 C 0.05 1.38 6.16 -38.47 -0.24 1.14 15 9 O -0.47 -11.12 9.41 -18.87 -0.18 -11.30 15 10 C 0.12 3.29 5.39 -106.48 -0.57 2.72 15 11 C -0.47 -12.43 8.06 -37.98 -0.31 -12.73 15 12 H 0.08 2.22 7.46 -52.49 -0.39 1.83 15 13 C 0.09 2.41 4.34 -17.31 -0.08 2.33 15 14 N -0.75 -19.93 11.32 55.55 0.63 -19.30 15 15 Si 0.90 19.03 29.61 -169.99 -5.03 13.99 15 16 H -0.26 -5.51 7.11 56.52 0.40 -5.11 15 17 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 19 H 0.07 1.17 7.54 -51.92 -0.39 0.78 15 20 H 0.09 1.20 8.14 -51.92 -0.42 0.78 15 21 H 0.07 1.12 7.54 -51.91 -0.39 0.72 15 22 H 0.10 1.88 5.48 -52.49 -0.29 1.59 15 23 H 0.09 1.82 8.06 -52.49 -0.42 1.40 15 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.06 1.22 7.51 -51.93 -0.39 0.83 15 26 H 0.05 0.85 8.08 -51.93 -0.42 0.43 15 27 H 0.35 6.90 9.06 45.56 0.41 7.31 15 28 H 0.28 6.87 8.30 -40.82 -0.34 6.53 15 LS Contribution 252.02 15.07 3.80 3.80 Total: -1.00 -29.07 252.02 -6.88 -35.95 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -2.26 Total: 6.85 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -1.53 Total: -25.14 kcal Atomic # 7 Polarization: -19.93 SS G_CDS: 0.63 Total: -19.30 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.18 Total: -11.30 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 13.99 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -2.31 Total: -4.86 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.07 -6.88 -35.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258047779.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.899 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds