Wall clock time and date at job start Mon Mar 30 2020 03:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76197 * 100.00072 * 2 1 4 4 C 1.38707 * 120.21385 * 0.02562 * 3 2 1 5 5 C 1.38220 * 120.29123 * 179.74424 * 4 3 2 6 6 C 1.38686 * 120.71904 * 0.27812 * 5 4 3 7 7 C 1.50703 * 119.79307 * 179.97438 * 6 5 4 8 8 C 1.38086 * 120.41769 * 359.95132 * 6 5 4 9 9 O 1.35720 * 120.15446 * 180.02562 * 8 6 5 10 10 C 1.41310 * 119.69023 * 0.02562 * 8 6 5 11 11 C 1.40845 * 120.34295 * 179.97438 * 10 8 6 12 12 H 1.07999 * 119.99344 * 141.96801 * 11 10 8 13 13 C 1.39887 * 120.00407 * 321.97021 * 11 10 8 14 14 N 1.30944 * 119.99603 * 337.93777 * 13 11 10 15 15 Si 1.86799 * 120.00097 * 157.94137 * 13 11 10 16 16 H 1.48500 * 109.46911 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47334 * 119.99755 * 15 13 11 18 18 H 1.48498 * 109.46765 * 239.99730 * 15 13 11 19 19 H 1.08994 * 109.47011 * 59.99787 * 1 2 3 20 20 H 1.08996 * 109.46935 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46953 * 300.00240 * 1 2 3 22 22 H 1.08000 * 119.85323 * 0.02562 * 4 3 2 23 23 H 1.07997 * 119.63667 * 180.25066 * 5 4 3 24 24 H 1.08996 * 109.47303 * 89.99077 * 7 6 5 25 25 H 1.08996 * 109.47105 * 210.00055 * 7 6 5 26 26 H 1.09007 * 109.46847 * 329.99746 * 7 6 5 27 27 H 0.96706 * 113.99337 * 90.00122 * 9 8 6 28 28 H 0.97003 * 119.99740 * 178.70156 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 1.0568 2.6308 0.0005 5 6 1.2949 3.9923 0.0059 6 6 2.5915 4.4847 0.0050 7 6 2.8271 5.9732 0.0103 8 6 3.6678 3.6197 -0.0003 9 8 4.9344 4.1074 -0.0006 10 6 3.4444 2.2244 -0.0053 11 6 4.5322 1.3297 -0.0112 12 1 4.4824 0.4154 0.5616 13 6 5.6769 1.6252 -0.7589 14 7 5.6046 2.4613 -1.7640 15 14 7.3087 0.8270 -0.3235 16 1 7.1243 -0.0710 0.8448 17 1 7.7987 0.0382 -1.4823 18 1 8.3003 1.8797 0.0135 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 0.0415 2.2626 0.0014 23 1 0.4623 4.6801 0.0103 24 1 2.8860 6.3281 1.0391 25 1 3.7618 6.1948 -0.5047 26 1 2.0037 6.4732 -0.4999 27 1 5.3029 4.2453 0.8828 28 1 6.4021 2.6807 -2.2707 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258047779.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:59 Heat of formation + Delta-G solvation = -48.018012 kcal Electronic energy + Delta-G solvation = -13355.145163 eV Core-core repulsion = 11075.317811 eV Total energy + Delta-G solvation = -2279.827353 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.05957 -36.83200 -35.51551 -33.08900 -31.36841 -29.47388 -27.27795 -26.99397 -22.80642 -21.88818 -19.34777 -18.61552 -17.11989 -16.80714 -16.23274 -16.00928 -15.30964 -14.75238 -14.44783 -14.12889 -13.98385 -13.55593 -13.27874 -13.04586 -12.93074 -12.73050 -12.63330 -12.26085 -12.08378 -11.74497 -11.11626 -10.85298 -10.43796 -9.90591 -9.05745 -8.60695 -7.99621 -6.24012 0.78663 0.96798 1.18337 1.40192 1.47243 1.53623 1.97857 2.26672 2.74895 3.45873 4.02408 4.27417 4.36207 4.39844 4.48868 4.70296 4.79352 4.89753 4.91433 5.11884 5.23394 5.45754 5.58814 5.72107 5.82615 6.09468 6.28529 6.51516 6.81666 6.97210 7.52406 8.44157 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.021762 B = 0.014383 C = 0.009080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.358061 B = 1946.288591 C = 3082.893856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.163 6.163 3 C -0.204 4.204 4 C -0.111 4.111 5 C -0.209 4.209 6 C -0.111 4.111 7 C -0.092 4.092 8 C 0.033 3.967 9 O -0.476 6.476 10 C 0.086 3.914 11 C -0.496 4.496 12 H 0.069 0.931 13 C 0.060 3.940 14 N -0.789 5.789 15 Si 0.965 3.035 16 H -0.263 1.263 17 H -0.273 1.273 18 H -0.262 1.262 19 H 0.079 0.921 20 H 0.118 0.882 21 H 0.084 0.916 22 H 0.126 0.874 23 H 0.127 0.873 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.361 0.639 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.603 1.118 3.621 5.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.076 5.924 3 C -0.316 4.316 4 C -0.135 4.135 5 C -0.230 4.230 6 C -0.113 4.113 7 C -0.149 4.149 8 C -0.014 4.014 9 O -0.283 6.283 10 C 0.080 3.920 11 C -0.526 4.526 12 H 0.087 0.913 13 C -0.159 4.159 14 N -0.413 5.413 15 Si 0.787 3.213 16 H -0.187 1.187 17 H -0.198 1.198 18 H -0.187 1.187 19 H 0.097 0.903 20 H 0.136 0.864 21 H 0.103 0.897 22 H 0.144 0.856 23 H 0.145 0.855 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.214 0.786 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.863 0.151 2.780 4.762 hybrid contribution 0.092 0.748 0.438 0.872 sum -3.771 0.899 3.219 5.039 Atomic orbital electron populations 1.23595 0.94515 1.07228 1.05260 1.85273 1.07073 1.05697 1.94364 1.21838 0.96241 0.95165 1.18394 1.20993 0.97014 0.93570 1.01891 1.20437 0.95353 0.94460 1.12727 1.20256 0.93109 0.96502 1.01431 1.20523 1.01786 0.90559 1.02002 1.18403 0.83616 0.90340 1.09078 1.84874 1.27380 1.85316 1.30686 1.17914 0.91267 0.92737 0.90108 1.19223 1.00050 1.05927 1.27361 0.91294 1.26345 1.02775 0.94325 0.92436 1.69855 1.31705 1.27263 1.12471 0.85429 0.77835 0.78908 0.79114 1.18706 1.19805 1.18700 0.90251 0.86363 0.89747 0.85603 0.85491 0.90798 0.92884 0.91043 0.78647 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 8.98 113.37 1.02 -3.10 15 2 S -0.16 -7.03 21.45 -56.49 -1.21 -8.24 15 3 C -0.20 -10.02 6.18 23.20 0.14 -9.87 15 4 C -0.11 -4.79 9.17 22.38 0.21 -4.58 15 5 C -0.21 -8.71 9.67 22.37 0.22 -8.50 15 6 C -0.11 -4.91 5.89 -19.79 -0.12 -5.03 15 7 C -0.09 -3.23 9.77 71.24 0.70 -2.54 15 8 C 0.03 1.68 6.16 22.99 0.14 1.82 15 9 O -0.48 -23.06 9.41 -90.42 -0.85 -23.91 15 10 C 0.09 4.66 5.39 -21.07 -0.11 4.55 15 11 C -0.50 -27.30 8.06 23.31 0.19 -27.12 15 12 H 0.07 3.85 7.46 -2.91 -0.02 3.83 15 13 C 0.06 3.14 4.34 85.22 0.37 3.51 15 14 N -0.79 -43.15 11.32 21.82 0.25 -42.90 15 15 Si 0.97 40.01 29.61 68.60 2.03 42.04 15 16 H -0.26 -10.82 7.11 99.48 0.71 -10.12 15 17 H -0.27 -11.02 7.11 99.48 0.71 -10.32 15 18 H -0.26 -10.33 7.11 99.48 0.71 -9.63 15 19 H 0.08 2.30 7.54 -2.40 -0.02 2.28 15 20 H 0.12 2.83 8.14 -2.40 -0.02 2.81 15 21 H 0.08 2.34 7.54 -2.39 -0.02 2.32 15 22 H 0.13 4.53 5.48 -2.91 -0.02 4.51 15 23 H 0.13 4.39 8.06 -2.91 -0.02 4.36 15 24 H 0.07 2.25 8.14 -2.39 -0.02 2.23 15 25 H 0.05 1.96 7.51 -2.39 -0.02 1.94 15 26 H 0.07 2.18 8.08 -2.38 -0.02 2.16 15 27 H 0.36 14.59 9.06 -74.05 -0.67 13.92 15 28 H 0.28 14.23 8.30 -92.71 -0.77 13.47 15 Total: -1.00 -63.55 252.02 3.47 -60.08 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.51 Total: 23.77 kcal Atomic # 6 Polarization: -53.60 SS G_CDS: 2.75 Total: -50.85 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.25 Total: -42.90 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.85 Total: -23.91 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 16 Polarization: -7.03 SS G_CDS: -1.21 Total: -8.24 kcal Total: -63.55 3.47 -60.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258047779.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.064 kcal (2) G-P(sol) polarization free energy of solvation -63.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds