Wall clock time and date at job start Mon Mar 30 2020 02:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30928 * 1 3 3 Si 1.86804 * 119.99813 * 2 1 4 4 H 1.48500 * 109.47038 * 275.29020 * 3 2 1 5 5 H 1.48496 * 109.47249 * 35.29341 * 3 2 1 6 6 H 1.48501 * 109.47117 * 155.29219 * 3 2 1 7 7 C 1.39865 * 120.00594 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99722 * 339.12941 * 7 2 1 9 9 C 1.40926 * 120.00375 * 159.11900 * 7 2 1 10 10 C 1.41393 * 120.26436 * 318.58375 * 9 7 2 11 11 O 1.34537 * 133.33807 * 0.04138 * 10 9 7 12 12 C 1.34400 * 110.90679 * 179.91709 * 11 10 9 13 13 C 1.34096 * 109.98508 * 359.75677 * 12 11 10 14 14 C 1.39853 * 119.18843 * 179.97438 * 10 9 7 15 15 C 1.40124 * 120.35659 * 0.05183 * 14 10 9 16 16 F 1.35102 * 119.93301 * 179.97438 * 15 14 10 17 17 C 1.38471 * 120.13497 * 0.02562 * 15 14 10 18 18 C 1.38144 * 120.50103 * 359.95404 * 17 15 14 19 19 F 1.35104 * 119.82875 * 180.02562 * 18 17 15 20 20 H 0.97000 * 120.00368 * 359.97438 * 1 2 3 21 21 H 1.07997 * 125.00920 * 180.02562 * 12 11 10 22 22 H 1.07995 * 126.93784 * 180.30866 * 13 12 11 23 23 H 1.07992 * 119.74965 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6178 0.0000 4 1 2.3789 2.1110 -1.3941 5 1 1.5011 2.6178 0.8089 6 1 3.5923 1.4106 0.5852 7 6 2.0087 -1.2112 0.0005 8 1 1.5219 -2.1157 0.3342 9 6 3.3486 -1.2514 -0.4344 10 6 3.7507 -0.5154 -1.5728 11 8 3.0986 0.2954 -2.4257 12 6 3.9316 0.7705 -3.3674 13 6 5.1690 0.2939 -3.1674 14 6 5.0861 -0.5711 -1.9843 15 6 6.0132 -1.3481 -1.2770 16 9 7.3011 -1.3962 -1.6824 17 6 5.6119 -2.0676 -0.1640 18 6 4.2980 -2.0270 0.2608 19 9 3.9214 -2.7340 1.3487 20 1 -0.4851 0.8400 0.0004 21 1 3.6474 1.4410 -4.1648 22 1 6.0484 0.5032 -3.7582 23 1 6.3315 -2.6647 0.3762 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258047863.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:36 Heat of formation + Delta-G solvation = -66.965472 kcal Electronic energy + Delta-G solvation = -15021.124164 eV Core-core repulsion = 12050.801706 eV Total energy + Delta-G solvation = -2970.322457 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 224.039 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.84672 -47.56791 -41.60920 -36.32437 -33.89915 -31.79044 -30.08908 -28.13976 -25.14543 -22.49526 -21.35048 -20.28160 -18.21292 -17.36426 -16.52927 -15.99983 -15.62540 -14.97220 -14.72118 -14.54245 -14.11434 -13.72792 -13.50750 -13.03349 -12.80425 -12.18310 -11.72104 -11.43964 -11.13589 -10.87231 -10.40730 -10.33172 -10.09597 -9.50816 -8.96157 -7.83891 -7.29660 -7.14786 -4.65756 1.67452 2.14911 2.79015 3.02065 3.10843 3.20182 3.65073 3.88390 4.12522 4.81441 5.03499 5.17743 5.55030 5.67411 5.81283 5.90758 6.14098 6.54033 6.76857 6.87583 6.90656 7.09490 7.21870 7.62691 7.77177 8.06311 8.25589 8.46132 9.83575 Molecular weight = 224.04amu Principal moments of inertia in cm(-1) A = 0.026413 B = 0.015777 C = 0.011114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.839877 B = 1774.304955 C = 2518.716915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.095 3.905 3 Si 0.888 3.112 4 H -0.244 1.244 5 H -0.277 1.277 6 H -0.250 1.250 7 C -0.434 4.434 8 H 0.105 0.895 9 C 0.077 3.923 10 C 0.011 3.989 11 O -0.173 6.173 12 C -0.010 4.010 13 C -0.220 4.220 14 C -0.130 4.130 15 C 0.014 3.986 16 F -0.156 7.156 17 C -0.136 4.136 18 C 0.004 3.996 19 F -0.141 7.141 20 H 0.290 0.710 21 H 0.197 0.803 22 H 0.148 0.852 23 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 2.813 -3.619 6.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.127 4.127 3 Si 0.711 3.289 4 H -0.168 1.168 5 H -0.203 1.203 6 H -0.173 1.173 7 C -0.461 4.461 8 H 0.123 0.877 9 C 0.073 3.927 10 C -0.037 4.037 11 O -0.073 6.073 12 C -0.077 4.077 13 C -0.239 4.239 14 C -0.132 4.132 15 C -0.006 4.006 16 F -0.135 7.135 17 C -0.156 4.156 18 C -0.017 4.017 19 F -0.120 7.120 20 H 0.101 0.899 21 H 0.214 0.786 22 H 0.166 0.834 23 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.683 2.930 -3.534 6.558 hybrid contribution 0.582 0.592 -0.017 0.830 sum 5.266 3.521 -3.551 7.262 Atomic orbital electron populations 1.69721 1.08090 1.30813 1.32130 1.26043 0.94701 1.01437 0.90497 0.86556 0.81408 0.80351 0.80546 1.16828 1.20342 1.17311 1.19245 0.93126 0.97227 1.36504 0.87717 1.16480 0.94075 0.92671 0.89483 1.19257 0.89306 1.00804 0.94342 1.84074 1.37814 1.51677 1.33742 1.23774 0.89100 1.00808 0.94010 1.22267 0.98225 1.03664 0.99737 1.19585 0.93914 1.01620 0.98059 1.15988 0.77900 1.07398 0.99300 1.91327 1.35488 1.96078 1.90620 1.20357 0.95633 1.02181 0.97422 1.16616 0.90761 1.05363 0.88945 1.91352 1.92086 1.76828 1.51766 0.89921 0.78590 0.83450 0.85550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.26 13.93 55.54 0.77 -19.48 14 2 C 0.10 2.45 5.25 -17.33 -0.09 2.36 14 3 Si 0.89 20.17 24.82 -169.99 -4.22 15.95 14 4 H -0.24 -5.29 6.08 56.52 0.34 -4.94 14 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 14 6 H -0.25 -5.93 7.11 56.52 0.40 -5.53 14 7 C -0.43 -11.62 9.10 -37.96 -0.35 -11.96 14 8 H 0.11 2.93 8.06 -52.48 -0.42 2.50 14 9 C 0.08 1.96 4.74 -106.66 -0.51 1.46 14 10 C 0.01 0.26 5.26 -37.78 -0.20 0.06 14 11 O -0.17 -3.88 7.05 4.81 0.03 -3.85 14 12 C -0.01 -0.19 11.97 29.27 0.35 0.16 14 13 C -0.22 -4.09 11.15 -37.58 -0.42 -4.51 14 14 C -0.13 -2.92 6.37 -105.13 -0.67 -3.59 14 15 C 0.01 0.32 7.36 -38.79 -0.29 0.03 14 16 F -0.16 -3.24 17.27 2.25 0.04 -3.20 14 17 C -0.14 -2.96 9.96 -39.53 -0.39 -3.35 14 18 C 0.00 0.10 7.30 -38.60 -0.28 -0.18 14 19 F -0.14 -3.34 16.80 2.25 0.04 -3.30 14 20 H 0.29 6.72 8.30 -40.82 -0.34 6.38 14 21 H 0.20 2.46 8.06 -52.49 -0.42 2.03 14 22 H 0.15 2.28 8.06 -52.49 -0.42 1.85 14 23 H 0.13 2.37 8.06 -52.49 -0.42 1.95 14 LS Contribution 219.14 15.07 3.30 3.30 Total: -1.00 -27.65 219.14 -3.76 -31.41 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: -0.88 Total: -1.30 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -2.84 Total: -19.52 kcal Atomic # 7 Polarization: -20.26 SS G_CDS: 0.77 Total: -19.48 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: 0.03 Total: -3.85 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.08 Total: -6.50 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.22 Total: 15.95 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -27.65 -3.76 -31.41 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258047863.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.556 kcal (2) G-P(sol) polarization free energy of solvation -27.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds