Wall clock time and date at job start Mon Mar 30 2020 02:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30928 * 1 3 3 Si 1.86804 * 119.99813 * 2 1 4 4 H 1.48500 * 109.47038 * 275.29020 * 3 2 1 5 5 H 1.48496 * 109.47249 * 35.29341 * 3 2 1 6 6 H 1.48501 * 109.47117 * 155.29219 * 3 2 1 7 7 C 1.39865 * 120.00594 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99722 * 339.12941 * 7 2 1 9 9 C 1.40926 * 120.00375 * 159.11900 * 7 2 1 10 10 C 1.41393 * 120.26436 * 318.58375 * 9 7 2 11 11 O 1.34537 * 133.33807 * 0.04138 * 10 9 7 12 12 C 1.34400 * 110.90679 * 179.91709 * 11 10 9 13 13 C 1.34096 * 109.98508 * 359.75677 * 12 11 10 14 14 C 1.39853 * 119.18843 * 179.97438 * 10 9 7 15 15 C 1.40124 * 120.35659 * 0.05183 * 14 10 9 16 16 F 1.35102 * 119.93301 * 179.97438 * 15 14 10 17 17 C 1.38471 * 120.13497 * 0.02562 * 15 14 10 18 18 C 1.38144 * 120.50103 * 359.95404 * 17 15 14 19 19 F 1.35104 * 119.82875 * 180.02562 * 18 17 15 20 20 H 0.97000 * 120.00368 * 359.97438 * 1 2 3 21 21 H 1.07997 * 125.00920 * 180.02562 * 12 11 10 22 22 H 1.07995 * 126.93784 * 180.30866 * 13 12 11 23 23 H 1.07992 * 119.74965 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6178 0.0000 4 1 2.3789 2.1110 -1.3941 5 1 1.5011 2.6178 0.8089 6 1 3.5923 1.4106 0.5852 7 6 2.0087 -1.2112 0.0005 8 1 1.5219 -2.1157 0.3342 9 6 3.3486 -1.2514 -0.4344 10 6 3.7507 -0.5154 -1.5728 11 8 3.0986 0.2954 -2.4257 12 6 3.9316 0.7705 -3.3674 13 6 5.1690 0.2939 -3.1674 14 6 5.0861 -0.5711 -1.9843 15 6 6.0132 -1.3481 -1.2770 16 9 7.3011 -1.3962 -1.6824 17 6 5.6119 -2.0676 -0.1640 18 6 4.2980 -2.0270 0.2608 19 9 3.9214 -2.7340 1.3487 20 1 -0.4851 0.8400 0.0004 21 1 3.6474 1.4410 -4.1648 22 1 6.0484 0.5032 -3.7582 23 1 6.3315 -2.6647 0.3762 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258047863.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:36 Heat of formation + Delta-G solvation = -83.436670 kcal Electronic energy + Delta-G solvation = -15021.838408 eV Core-core repulsion = 12050.801706 eV Total energy + Delta-G solvation = -2971.036702 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 224.039 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.58961 -49.45221 -43.25983 -38.11677 -35.74093 -33.46124 -31.88161 -29.79727 -27.02041 -24.22588 -23.06991 -21.94366 -20.01693 -19.10162 -18.24975 -17.76855 -17.34223 -16.76098 -16.46744 -16.30823 -15.93842 -15.42786 -15.26018 -14.78306 -14.55234 -13.77019 -13.48170 -13.23237 -12.89085 -12.59649 -12.21020 -12.11928 -11.90347 -11.29951 -10.63755 -9.60461 -9.08012 -8.96469 -6.62390 -0.05717 0.35068 1.11417 1.22202 1.35867 1.53053 2.00740 2.11122 2.30990 2.92156 3.32227 3.62030 3.82845 4.03023 4.11522 4.41268 4.66875 4.78993 5.06301 5.08279 5.27580 5.29045 5.54091 5.84801 5.99726 6.11689 6.43336 6.56539 8.03058 Molecular weight = 224.04amu Principal moments of inertia in cm(-1) A = 0.026413 B = 0.015777 C = 0.011114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.839877 B = 1774.304955 C = 2518.716915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.068 3.932 3 Si 0.931 3.069 4 H -0.223 1.223 5 H -0.260 1.260 6 H -0.270 1.270 7 C -0.478 4.478 8 H 0.069 0.931 9 C 0.059 3.941 10 C -0.005 4.005 11 O -0.195 6.195 12 C 0.004 3.996 13 C -0.221 4.221 14 C -0.148 4.148 15 C 0.030 3.970 16 F -0.143 7.143 17 C -0.136 4.136 18 C -0.009 4.009 19 F -0.146 7.146 20 H 0.300 0.700 21 H 0.254 0.746 22 H 0.185 0.815 23 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.319 4.415 -5.427 10.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.151 4.151 3 Si 0.752 3.248 4 H -0.146 1.146 5 H -0.185 1.185 6 H -0.194 1.194 7 C -0.506 4.506 8 H 0.087 0.913 9 C 0.055 3.945 10 C -0.053 4.053 11 O -0.096 6.096 12 C -0.061 4.061 13 C -0.239 4.239 14 C -0.150 4.150 15 C 0.010 3.990 16 F -0.122 7.122 17 C -0.156 4.156 18 C -0.030 4.030 19 F -0.125 7.125 20 H 0.111 0.889 21 H 0.270 0.730 22 H 0.202 0.798 23 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.757 4.527 -5.353 9.737 hybrid contribution 0.165 0.015 0.426 0.457 sum 6.922 4.542 -4.928 9.634 Atomic orbital electron populations 1.69729 1.08957 1.31998 1.34167 1.26592 0.95230 1.03388 0.89859 0.85934 0.79348 0.77812 0.81685 1.14639 1.18466 1.19421 1.19114 0.94522 0.96871 1.40117 0.91325 1.16684 0.93820 0.93713 0.90234 1.19242 0.90264 1.01345 0.94464 1.84078 1.39204 1.51777 1.34551 1.24939 0.88321 0.99652 0.93145 1.22693 1.00026 1.02628 0.98591 1.20070 0.93195 1.02149 0.99541 1.16155 0.78298 1.05965 0.98591 1.91366 1.34570 1.95887 1.90406 1.20594 0.95124 1.02290 0.97586 1.16925 0.91689 1.05293 0.89048 1.91332 1.92269 1.76912 1.51985 0.88939 0.73036 0.79771 0.82469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.95 13.93 21.82 0.30 -43.65 14 2 C 0.07 3.58 5.25 85.22 0.45 4.02 14 3 Si 0.93 41.17 24.82 68.60 1.70 42.87 14 4 H -0.22 -8.96 6.08 99.48 0.60 -8.35 14 5 H -0.26 -10.54 7.11 99.48 0.71 -9.83 14 6 H -0.27 -12.64 7.11 99.48 0.71 -11.94 14 7 C -0.48 -26.91 9.10 23.32 0.21 -26.70 14 8 H 0.07 4.18 8.06 -2.91 -0.02 4.15 14 9 C 0.06 3.08 4.74 -21.18 -0.10 2.97 14 10 C -0.01 -0.25 5.26 23.44 0.12 -0.13 14 11 O -0.19 -8.31 7.05 -5.72 -0.04 -8.35 14 12 C 0.00 0.13 11.97 66.88 0.80 0.93 14 13 C -0.22 -7.17 11.15 23.56 0.26 -6.91 14 14 C -0.15 -6.23 6.37 -20.19 -0.13 -6.36 14 15 C 0.03 1.25 7.36 22.78 0.17 1.42 14 16 F -0.14 -5.40 17.27 44.97 0.78 -4.63 14 17 C -0.14 -5.69 9.96 22.30 0.22 -5.47 14 18 C -0.01 -0.42 7.30 22.91 0.17 -0.25 14 19 F -0.15 -7.07 16.80 44.97 0.76 -6.32 14 20 H 0.30 14.18 8.30 -92.71 -0.77 13.41 14 21 H 0.25 4.61 8.06 -2.91 -0.02 4.58 14 22 H 0.19 4.55 8.06 -2.91 -0.02 4.53 14 23 H 0.16 5.47 8.06 -2.91 -0.02 5.45 14 Total: -1.00 -61.37 219.14 6.83 -54.54 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: 1.16 Total: 2.01 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 2.17 Total: -36.47 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.30 Total: -43.65 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.04 Total: -8.35 kcal Atomic # 9 Polarization: -12.48 SS G_CDS: 1.53 Total: -10.95 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.70 Total: 42.87 kcal Total: -61.37 6.83 -54.54 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258047863.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.895 kcal (2) G-P(sol) polarization free energy of solvation -61.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds