Wall clock time and date at job start Mon Mar 30 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86802 * 120.00024 * 2 1 4 4 H 1.48503 * 109.47012 * 84.69960 * 3 2 1 5 5 H 1.48499 * 109.47270 * 204.70105 * 3 2 1 6 6 H 1.48493 * 109.46860 * 324.69938 * 3 2 1 7 7 C 1.39989 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99982 * 330.08561 * 7 2 1 9 9 C 1.40527 * 120.00000 * 150.08754 * 7 2 1 10 10 C 1.46309 * 120.71786 * 145.39796 * 9 7 2 11 11 C 1.41502 * 134.21573 * 359.95974 * 10 9 7 12 12 C 1.34567 * 106.97528 * 180.02562 * 11 10 9 13 13 O 1.34423 * 109.68758 * 359.37244 * 12 11 10 14 14 C 1.35022 * 109.79613 * 0.75699 * 13 12 11 15 15 C 1.39257 * 133.29892 * 179.17855 * 14 13 12 16 16 F 1.35099 * 119.46668 * 359.97438 * 15 14 13 17 17 C 1.38558 * 121.07197 * 179.97438 * 15 14 13 18 18 C 1.37856 * 121.51552 * 359.97438 * 17 15 14 19 19 F 1.35104 * 120.04835 * 179.97438 * 18 17 15 20 20 H 0.96997 * 120.00241 * 0.02562 * 1 2 3 21 21 H 1.07990 * 126.51265 * 0.03176 * 11 10 9 22 22 H 1.08007 * 125.15376 * 179.97438 * 12 11 10 23 23 H 1.07997 * 119.24150 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3783 2.1111 1.3941 5 1 3.5918 1.4105 -0.5851 6 1 1.5007 2.6177 -0.8090 7 6 2.0087 -1.2123 0.0005 8 1 1.5767 -2.0851 0.4674 9 6 3.2736 -1.2936 -0.6063 10 6 4.3145 -2.1592 -0.0514 11 6 4.3836 -3.0307 1.0612 12 6 5.6194 -3.5634 1.0669 13 8 6.3209 -3.0911 0.0220 14 6 5.5632 -2.2239 -0.6830 15 6 5.7989 -1.4554 -1.8201 16 9 7.0061 -1.5146 -2.4237 17 6 4.8155 -0.6309 -2.3426 18 6 3.5689 -0.5384 -1.7612 19 9 2.6321 0.2755 -2.2952 20 1 -0.4850 0.8400 -0.0004 21 1 3.5946 -3.2305 1.7709 22 1 5.9882 -4.2712 1.7946 23 1 5.0301 -0.0481 -3.2260 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258056150.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:39 Heat of formation + Delta-G solvation = -82.276292 kcal Electronic energy + Delta-G solvation = -14939.634976 eV Core-core repulsion = 11968.648591 eV Total energy + Delta-G solvation = -2970.986384 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 224.039 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.63645 -49.49052 -43.17382 -38.02031 -35.70773 -33.50194 -31.69063 -30.12072 -26.82859 -23.81634 -23.32543 -21.96622 -19.84666 -18.95209 -18.85887 -17.49635 -17.17624 -17.06878 -16.55920 -16.24715 -15.81534 -15.40083 -15.14291 -14.78379 -13.99653 -13.75086 -13.63178 -13.30994 -12.93306 -12.67654 -12.19328 -12.00994 -11.70495 -11.20939 -10.81145 -9.38845 -9.24240 -9.09905 -6.60782 0.01192 0.44319 1.24605 1.33222 1.39735 1.59821 1.99424 2.05918 2.22596 2.98550 3.41767 3.73264 3.95096 4.10205 4.35281 4.52088 4.73848 4.91848 5.09901 5.15320 5.23346 5.33788 5.72408 5.77310 5.93643 6.17236 6.36191 6.51894 7.76975 Molecular weight = 224.04amu Principal moments of inertia in cm(-1) A = 0.032144 B = 0.012817 C = 0.010188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.868409 B = 2184.124330 C = 2747.599461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.065 3.935 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.255 1.255 6 H -0.259 1.259 7 C -0.432 4.432 8 H 0.089 0.911 9 C 0.085 3.915 10 C -0.190 4.190 11 C -0.189 4.189 12 C -0.032 4.032 13 O -0.195 6.195 14 C 0.031 3.969 15 C -0.039 4.039 16 F -0.156 7.156 17 C -0.087 4.087 18 C -0.074 4.074 19 F -0.148 7.148 20 H 0.307 0.693 21 H 0.164 0.836 22 H 0.255 0.745 23 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.404 -1.068 2.059 5.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.160 4.160 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.179 1.179 6 H -0.184 1.184 7 C -0.456 4.456 8 H 0.107 0.893 9 C 0.080 3.920 10 C -0.191 4.191 11 C -0.208 4.208 12 C -0.096 4.096 13 O -0.096 6.096 14 C -0.018 4.018 15 C -0.060 4.060 16 F -0.135 7.135 17 C -0.107 4.107 18 C -0.094 4.094 19 F -0.128 7.128 20 H 0.118 0.882 21 H 0.181 0.819 22 H 0.271 0.729 23 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.354 -1.037 1.957 5.794 hybrid contribution -0.294 0.705 -0.224 0.796 sum 5.060 -0.332 1.732 5.359 Atomic orbital electron populations 1.69737 1.09334 1.33080 1.27996 1.26979 0.95247 1.04429 0.89348 0.85483 0.81539 0.76321 0.78308 1.19935 1.17877 1.18366 1.19357 0.98092 0.98146 1.30038 0.89305 1.18168 0.91971 0.91268 0.90556 1.19786 0.92614 1.06918 0.99828 1.21491 0.99339 1.00246 0.99683 1.24772 0.91011 1.02473 0.91333 1.84073 1.40833 1.49284 1.35370 1.19545 0.91297 0.95533 0.95425 1.15410 0.83726 1.09724 0.97118 1.91330 1.42536 1.96448 1.83229 1.20228 0.90732 0.98777 1.00922 1.16874 0.88251 1.05677 0.98583 1.90999 1.64927 1.71113 1.85725 0.88168 0.81862 0.72910 0.82996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.48 13.93 21.84 0.30 -38.17 14 2 C 0.06 3.20 4.73 85.26 0.40 3.60 14 3 Si 0.96 41.38 25.29 68.60 1.73 43.11 14 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 14 5 H -0.25 -11.59 5.46 99.48 0.54 -11.04 14 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 14 7 C -0.43 -22.21 9.36 23.25 0.22 -22.00 14 8 H 0.09 4.70 8.06 -2.91 -0.02 4.68 14 9 C 0.08 4.23 5.03 -19.92 -0.10 4.13 14 10 C -0.19 -8.72 6.23 -19.93 -0.12 -8.85 14 11 C -0.19 -7.02 10.82 22.23 0.24 -6.78 14 12 C -0.03 -0.99 12.00 66.98 0.80 -0.19 14 13 O -0.19 -7.66 10.66 -10.86 -0.12 -7.77 14 14 C 0.03 1.40 7.37 22.96 0.17 1.57 14 15 C -0.04 -1.77 7.30 22.59 0.16 -1.61 14 16 F -0.16 -6.69 17.25 44.97 0.78 -5.91 14 17 C -0.09 -3.85 9.89 22.26 0.22 -3.63 14 18 C -0.07 -3.57 5.06 22.89 0.12 -3.46 14 19 F -0.15 -7.19 12.81 44.97 0.58 -6.61 14 20 H 0.31 13.41 8.30 -92.71 -0.77 12.64 14 21 H 0.16 5.39 8.06 -2.92 -0.02 5.36 14 22 H 0.26 4.57 8.06 -2.91 -0.02 4.55 14 23 H 0.15 5.76 8.06 -2.91 -0.02 5.73 14 Total: -1.00 -57.28 217.93 6.48 -50.80 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: 1.09 Total: 1.76 kcal Atomic # 6 Polarization: -39.31 SS G_CDS: 2.11 Total: -37.20 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.30 Total: -38.17 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.12 Total: -7.77 kcal Atomic # 9 Polarization: -13.88 SS G_CDS: 1.35 Total: -12.52 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.73 Total: 43.11 kcal Total: -57.28 6.48 -50.80 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258056150.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.476 kcal (2) G-P(sol) polarization free energy of solvation -57.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds