Wall clock time and date at job start Mon Mar 30 2020 03:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48503 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46925 * 180.02562 * 10 9 7 12 12 O 1.20755 * 120.00374 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.50697 * 109.47266 * 180.02562 * 13 11 10 15 15 C 1.33387 * 125.20285 * 89.99451 * 14 13 11 16 16 C 1.38431 * 114.91840 * 179.97438 * 15 14 13 17 17 C 1.33387 * 114.92130 * 0.02562 * 16 15 14 18 18 S 1.75888 * 125.19926 * 269.69244 * 14 13 11 19 19 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 21 21 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 22 22 H 1.09000 * 109.46497 * 60.00269 * 10 9 7 23 23 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 24 24 H 1.09004 * 109.46932 * 300.00335 * 13 11 10 25 25 H 1.08997 * 109.47392 * 59.99674 * 13 11 10 26 26 H 1.07989 * 122.54425 * 359.96399 * 15 14 13 27 27 H 1.07998 * 122.53581 * 180.02562 * 16 15 14 28 28 H 1.07993 * 125.20782 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4917 -4.9672 -0.0045 12 8 0.2841 -4.9672 -0.0054 13 6 2.2451 -6.2723 -0.0053 14 6 1.2659 -7.4178 -0.0077 15 6 0.7673 -8.0009 -1.0989 16 6 -0.1176 -9.0368 -0.8539 17 6 -0.3380 -9.2946 0.4361 18 16 0.6113 -8.1951 1.4279 19 1 -0.4851 0.8400 0.0004 20 1 0.6247 -2.5563 -0.8920 21 1 0.6240 -2.5576 0.8880 22 1 2.8718 -3.6051 0.8873 23 1 2.8719 -3.6036 -0.8927 24 1 2.8725 -6.3292 -0.8948 25 1 2.8712 -6.3310 0.8851 26 1 1.0337 -7.6884 -2.0977 27 1 -0.5934 -9.5941 -1.6473 28 1 -0.9948 -10.0640 0.8139 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259647357.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:29 Heat of formation + Delta-G solvation = -19.928329 kcal Electronic energy + Delta-G solvation = -12413.964724 eV Core-core repulsion = 10135.355432 eV Total energy + Delta-G solvation = -2278.609292 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.14920 -37.46194 -33.49266 -32.18812 -30.94360 -27.51892 -25.46071 -23.30212 -21.42000 -19.25537 -18.82531 -17.04122 -16.50309 -15.52849 -15.07077 -14.88663 -14.50101 -13.83860 -13.18651 -12.82585 -12.61474 -12.26285 -12.12148 -12.06339 -11.39284 -11.13846 -10.92069 -10.69668 -10.62599 -9.96972 -9.73709 -9.18953 -9.03947 -8.41533 -8.38575 -8.34000 -5.97580 -4.02242 1.05863 1.70231 2.06284 2.56825 2.81182 3.33504 3.38231 3.39916 4.42691 4.63504 4.78407 5.07634 5.23266 5.37185 5.49998 5.62034 5.63426 5.99632 6.15348 6.22973 6.28094 6.36425 6.54200 6.95739 7.70420 7.81457 8.03357 8.11822 8.41226 9.05583 9.61578 11.13318 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.070610 B = 0.004926 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.449062 B = 5682.676124 C = 5744.022496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.031 3.969 10 C -0.159 4.159 11 C 0.348 3.652 12 O -0.439 6.439 13 C -0.108 4.108 14 C -0.152 4.152 15 C -0.140 4.140 16 C -0.130 4.130 17 C -0.222 4.222 18 S 0.099 5.901 19 H 0.262 0.738 20 H 0.021 0.979 21 H 0.021 0.979 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.113 0.887 25 H 0.104 0.896 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.048 -17.301 0.131 17.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.197 4.197 11 C 0.221 3.779 12 O -0.311 6.311 13 C -0.148 4.148 14 C -0.270 4.270 15 C -0.170 4.170 16 C -0.161 4.161 17 C -0.357 4.357 18 S 0.362 5.638 19 H 0.071 0.929 20 H 0.040 0.960 21 H 0.040 0.960 22 H 0.103 0.897 23 H 0.103 0.897 24 H 0.131 0.869 25 H 0.122 0.878 26 H 0.155 0.845 27 H 0.155 0.845 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.400 -16.996 1.692 17.415 hybrid contribution 0.276 0.682 -1.531 1.698 sum 3.676 -16.314 0.161 16.723 Atomic orbital electron populations 1.69982 1.06077 1.26739 1.50132 1.25038 0.94837 0.99273 0.95270 0.86646 0.79550 0.83135 0.78573 1.20222 1.21276 1.20225 1.21191 0.92924 0.91027 1.51475 0.92606 1.18941 0.93369 0.90001 0.98342 1.22214 1.01102 0.93547 1.02802 1.24945 0.90135 0.91580 0.71191 1.90391 1.16776 1.89663 1.34237 1.20885 0.97181 0.91256 1.05446 1.24127 1.04790 1.02214 0.95857 1.20070 0.99771 0.97895 0.99253 1.20111 1.00318 0.99314 0.96357 1.25531 1.07517 1.05749 0.96908 1.84197 1.41010 1.28663 1.09912 0.92876 0.96032 0.96024 0.89742 0.89710 0.86925 0.87774 0.84476 0.84519 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.50 13.29 55.43 0.74 -26.76 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 15 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 15 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 15 9 C 0.03 0.82 4.26 -27.88 -0.12 0.70 15 10 C -0.16 -3.13 5.58 -27.88 -0.16 -3.29 15 11 C 0.35 6.33 7.15 -29.03 -0.21 6.12 15 12 O -0.44 -9.83 15.66 6.00 0.09 -9.73 15 13 C -0.11 -1.43 6.13 -29.04 -0.18 -1.61 15 14 C -0.15 -2.15 5.00 -36.00 -0.18 -2.33 15 15 C -0.14 -1.87 10.05 -41.21 -0.41 -2.28 15 16 C -0.13 -1.57 10.18 -41.21 -0.42 -1.99 15 17 C -0.22 -2.61 11.23 29.04 0.33 -2.28 15 18 S 0.10 1.30 23.33 -107.50 -2.51 -1.21 15 19 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 20 H 0.02 0.62 8.10 -51.93 -0.42 0.20 15 21 H 0.02 0.63 8.10 -51.93 -0.42 0.21 15 22 H 0.08 1.51 8.14 -51.93 -0.42 1.09 15 23 H 0.08 1.51 8.14 -51.93 -0.42 1.09 15 24 H 0.11 1.19 8.14 -51.93 -0.42 0.77 15 25 H 0.10 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.14 1.63 8.06 -52.49 -0.42 1.21 15 27 H 0.14 1.30 8.06 -52.49 -0.42 0.88 15 28 H 0.16 1.45 8.06 -52.49 -0.42 1.03 15 LS Contribution 266.27 15.07 4.01 4.01 Total: -1.00 -33.20 266.27 -7.79 -40.98 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -3.34 Total: -3.28 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -1.76 Total: -20.68 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.74 Total: -26.76 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.51 Total: -1.21 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.20 -7.79 -40.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259647357.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.054 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds