Wall clock time and date at job start Mon Mar 30 2020 03:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48503 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46925 * 180.02562 * 10 9 7 12 12 O 1.20755 * 120.00374 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.50697 * 109.47266 * 180.02562 * 13 11 10 15 15 C 1.33387 * 125.20285 * 89.99451 * 14 13 11 16 16 C 1.38431 * 114.91840 * 179.97438 * 15 14 13 17 17 C 1.33387 * 114.92130 * 0.02562 * 16 15 14 18 18 S 1.75888 * 125.19926 * 269.69244 * 14 13 11 19 19 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 21 21 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 22 22 H 1.09000 * 109.46497 * 60.00269 * 10 9 7 23 23 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 24 24 H 1.09004 * 109.46932 * 300.00335 * 13 11 10 25 25 H 1.08997 * 109.47392 * 59.99674 * 13 11 10 26 26 H 1.07989 * 122.54425 * 359.96399 * 15 14 13 27 27 H 1.07998 * 122.53581 * 180.02562 * 16 15 14 28 28 H 1.07993 * 125.20782 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4917 -4.9672 -0.0045 12 8 0.2841 -4.9672 -0.0054 13 6 2.2451 -6.2723 -0.0053 14 6 1.2659 -7.4178 -0.0077 15 6 0.7673 -8.0009 -1.0989 16 6 -0.1176 -9.0368 -0.8539 17 6 -0.3380 -9.2946 0.4361 18 16 0.6113 -8.1951 1.4279 19 1 -0.4851 0.8400 0.0004 20 1 0.6247 -2.5563 -0.8920 21 1 0.6240 -2.5576 0.8880 22 1 2.8718 -3.6051 0.8873 23 1 2.8719 -3.6036 -0.8927 24 1 2.8725 -6.3292 -0.8948 25 1 2.8712 -6.3310 0.8851 26 1 1.0337 -7.6884 -2.0977 27 1 -0.5934 -9.5941 -1.6473 28 1 -0.9948 -10.0640 0.8139 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259647357.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:29 Heat of formation + Delta-G solvation = -40.187955 kcal Electronic energy + Delta-G solvation = -12414.843247 eV Core-core repulsion = 10135.355432 eV Total energy + Delta-G solvation = -2279.487816 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.59397 -38.49412 -35.58427 -33.45247 -32.74302 -28.87737 -27.16448 -24.55132 -23.14051 -20.48802 -20.06585 -18.61353 -18.04628 -16.71599 -16.60006 -16.45216 -16.23552 -15.31324 -14.53465 -14.31402 -13.78630 -13.66893 -13.52479 -13.27509 -13.07026 -12.78286 -12.51145 -12.40401 -11.88434 -11.67411 -11.65071 -11.33548 -10.57026 -10.50696 -9.51076 -9.37495 -8.19226 -6.33467 0.08232 0.74479 1.10335 1.15251 1.41039 1.45358 1.53116 1.85295 2.41088 3.13466 3.30838 3.72237 4.23299 4.29499 4.37895 4.55776 4.63688 4.69812 4.74181 4.83670 5.20606 5.21571 5.39614 5.48153 5.60564 5.62878 5.83706 6.17021 6.72565 6.87566 7.37036 8.92939 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.070610 B = 0.004926 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.449062 B = 5682.676124 C = 5744.022496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.033 3.967 10 C -0.154 4.154 11 C 0.354 3.646 12 O -0.492 6.492 13 C -0.094 4.094 14 C -0.178 4.178 15 C -0.146 4.146 16 C -0.142 4.142 17 C -0.216 4.216 18 S 0.073 5.927 19 H 0.263 0.737 20 H -0.019 1.019 21 H -0.021 1.021 22 H 0.109 0.891 23 H 0.111 0.889 24 H 0.147 0.853 25 H 0.131 0.869 26 H 0.149 0.851 27 H 0.162 0.838 28 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.146 -17.967 -0.210 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.094 0.906 9 C -0.004 4.004 10 C -0.191 4.191 11 C 0.231 3.769 12 O -0.368 6.368 13 C -0.133 4.133 14 C -0.296 4.296 15 C -0.177 4.177 16 C -0.172 4.172 17 C -0.351 4.351 18 S 0.336 5.664 19 H 0.071 0.929 20 H -0.001 1.001 21 H -0.002 1.002 22 H 0.127 0.873 23 H 0.129 0.871 24 H 0.165 0.835 25 H 0.149 0.851 26 H 0.166 0.834 27 H 0.179 0.821 28 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 5.538 -17.683 1.353 18.579 hybrid contribution -0.434 0.836 -1.438 1.719 sum 5.103 -16.847 -0.086 17.603 Atomic orbital electron populations 1.70164 1.08313 1.27864 1.51530 1.26153 0.95731 1.04000 0.94659 0.85387 0.78076 0.77370 0.79512 1.18623 1.21379 1.18701 1.21727 0.94031 0.91767 1.50724 0.90619 1.18770 0.94011 0.93173 0.94421 1.22113 0.99846 0.91957 1.05215 1.25293 0.89421 0.93131 0.69087 1.90387 1.19020 1.90414 1.36948 1.20817 0.96721 0.87476 1.08296 1.24311 1.05924 1.03118 0.96208 1.20422 0.99539 0.97991 0.99715 1.20439 1.00264 0.99320 0.97218 1.25904 1.07054 1.05582 0.96598 1.84237 1.41886 1.29553 1.10686 0.92880 1.00079 1.00208 0.87333 0.87066 0.83520 0.85088 0.83364 0.82055 0.79587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.77 13.29 21.45 0.28 -59.48 15 2 C -0.01 -0.47 5.46 84.65 0.46 -0.01 15 3 Si 0.97 44.32 29.54 68.60 2.03 46.35 15 4 H -0.26 -11.22 7.11 99.48 0.71 -10.52 15 5 H -0.29 -13.05 7.11 99.48 0.71 -12.35 15 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 15 7 C -0.54 -30.99 9.11 25.60 0.23 -30.76 15 8 H 0.08 3.91 7.74 -2.91 -0.02 3.88 15 9 C 0.03 1.84 4.26 29.85 0.13 1.97 15 10 C -0.15 -5.92 5.58 29.85 0.17 -5.75 15 11 C 0.35 12.64 7.15 29.10 0.21 12.85 15 12 O -0.49 -22.69 15.66 -1.44 -0.02 -22.71 15 13 C -0.09 -2.26 6.13 29.10 0.18 -2.08 15 14 C -0.18 -4.77 5.00 24.59 0.12 -4.64 15 15 C -0.15 -3.67 10.05 21.22 0.21 -3.45 15 16 C -0.14 -3.15 10.18 21.22 0.22 -2.93 15 17 C -0.22 -4.71 11.23 66.72 0.75 -3.96 15 18 S 0.07 1.86 23.33 -56.49 -1.32 0.54 15 19 H 0.26 15.70 8.31 -92.71 -0.77 14.93 15 20 H -0.02 -1.20 8.10 -2.38 -0.02 -1.22 15 21 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 15 22 H 0.11 3.65 8.14 -2.39 -0.02 3.63 15 23 H 0.11 3.69 8.14 -2.39 -0.02 3.67 15 24 H 0.15 2.52 8.14 -2.38 -0.02 2.50 15 25 H 0.13 2.46 8.14 -2.39 -0.02 2.44 15 26 H 0.15 3.24 8.06 -2.92 -0.02 3.22 15 27 H 0.16 2.66 8.06 -2.91 -0.02 2.64 15 28 H 0.19 2.92 8.06 -2.91 -0.02 2.89 15 Total: -1.00 -75.00 266.27 4.79 -70.21 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 1.14 Total: 3.86 kcal Atomic # 6 Polarization: -41.45 SS G_CDS: 2.68 Total: -38.77 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.28 Total: -59.48 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.02 Total: -22.71 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.32 Total: 0.54 kcal Total: -75.00 4.79 -70.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259647357.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.024 kcal (2) G-P(sol) polarization free energy of solvation -75.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds