Wall clock time and date at job start Mon Mar 30 2020 03:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.50027 * 299.99924 * 9 7 2 11 11 C 1.53159 * 109.50030 * 60.07104 * 9 7 2 12 12 C 1.53166 * 108.95821 * 190.51030 * 11 9 7 13 13 C 1.51407 * 108.70369 * 310.34072 * 12 11 9 14 14 S 1.75827 * 125.24189 * 196.29735 * 13 12 11 15 15 C 1.75725 * 91.07943 * 179.97438 * 14 13 12 16 16 C 1.32914 * 109.58592 * 0.02562 * 15 14 13 17 17 C 1.34631 * 124.78993 * 16.29822 * 13 12 11 18 18 C 1.52292 * 122.83580 * 0.06872 * 17 13 12 19 19 H 1.09002 * 109.55488 * 257.61809 * 18 17 13 20 20 O 1.42896 * 109.61226 * 137.20896 * 18 17 13 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.55295 * 310.35622 * 11 9 7 23 23 H 1.09001 * 109.55350 * 70.56440 * 11 9 7 24 24 H 1.09002 * 109.59785 * 70.10566 * 12 11 9 25 25 H 1.08992 * 109.59389 * 190.41456 * 12 11 9 26 26 H 1.08004 * 125.20986 * 179.97438 * 15 14 13 27 27 H 1.07998 * 122.15075 * 180.02562 * 16 15 14 28 28 H 0.96699 * 114.00548 * 60.67520 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 1 0.6239 -2.5580 0.8878 11 6 0.3721 -2.5809 -1.2533 12 6 -0.5780 -3.7746 -1.1171 13 6 0.2280 -4.9939 -0.7221 14 16 -0.3269 -6.6583 -0.8388 15 6 1.1998 -7.2471 -0.1981 16 6 2.0024 -6.2187 0.0565 17 6 1.4799 -4.9602 -0.2281 18 6 2.2445 -3.6624 -0.0039 19 1 2.9691 -3.5226 -0.8061 20 8 2.9222 -3.7159 1.2531 21 1 -0.4849 0.8400 0.0004 22 1 -0.2072 -1.6630 -1.3528 23 1 1.0017 -2.7122 -2.1333 24 1 -1.3222 -3.5637 -0.3491 25 1 -1.0764 -3.9555 -2.0693 26 1 1.4477 -8.2856 -0.0354 27 1 2.9963 -6.3510 0.4578 28 1 3.5686 -4.4318 1.3213 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259712228.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:04 Heat of formation + Delta-G solvation = -29.065681 kcal Electronic energy + Delta-G solvation = -13407.770847 eV Core-core repulsion = 11128.765329 eV Total energy + Delta-G solvation = -2279.005518 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.85566 -35.35503 -34.56810 -32.19222 -29.04698 -27.87557 -24.85883 -22.74899 -21.91247 -19.76276 -17.65755 -16.83288 -16.49848 -15.97187 -14.78315 -14.48199 -13.69415 -13.29726 -12.83146 -12.52897 -12.38122 -12.02938 -11.99555 -11.09165 -10.90775 -10.78159 -10.66667 -10.45598 -10.10548 -9.88304 -9.45603 -9.25180 -8.73318 -8.29577 -8.14233 -7.86283 -5.96801 -4.01307 1.41484 2.01466 2.36661 3.10465 3.35540 3.39568 3.43145 4.46809 5.14079 5.23847 5.39322 5.41757 5.69268 5.84084 6.05049 6.07582 6.29946 6.45531 6.48250 6.52278 6.88908 6.95221 7.10443 7.35268 7.71397 7.89227 8.05185 8.41351 8.51777 9.00316 9.61755 11.09475 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.049076 B = 0.008527 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.401944 B = 3282.981196 C = 3744.258699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.501 4.501 8 H 0.057 0.943 9 C 0.058 3.942 10 H 0.037 0.963 11 C -0.104 4.104 12 C -0.052 4.052 13 C -0.141 4.141 14 S 0.053 5.947 15 C -0.229 4.229 16 C -0.118 4.118 17 C -0.146 4.146 18 C 0.174 3.826 19 H 0.055 0.945 20 O -0.545 6.545 21 H 0.261 0.739 22 H 0.109 0.891 23 H 0.037 0.963 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.157 0.843 27 H 0.131 0.869 28 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.921 -11.017 -2.259 11.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.539 4.539 8 H 0.075 0.925 9 C 0.040 3.960 10 H 0.055 0.945 11 C -0.144 4.144 12 C -0.092 4.092 13 C -0.258 4.258 14 S 0.318 5.682 15 C -0.364 4.364 16 C -0.149 4.149 17 C -0.157 4.157 18 C 0.114 3.886 19 H 0.073 0.927 20 O -0.348 6.348 21 H 0.071 0.929 22 H 0.127 0.873 23 H 0.056 0.944 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.175 0.825 27 H 0.149 0.851 28 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.965 -11.115 -2.616 11.459 hybrid contribution 2.097 0.748 0.398 2.262 sum 1.133 -10.366 -2.218 10.661 Atomic orbital electron populations 1.69841 1.05836 1.26545 1.51124 1.24939 0.94884 0.99038 0.95272 0.86633 0.79569 0.83046 0.78598 1.20344 1.21380 1.20294 1.21072 0.92993 0.90086 1.49776 0.92494 1.18661 0.91978 0.90398 0.94969 0.94471 1.21722 0.97406 0.96900 0.98370 1.20551 0.97662 0.90964 1.00001 1.25116 0.98077 0.96651 1.05911 1.83920 1.17856 1.00846 1.65566 1.25128 0.97793 1.02438 1.11049 1.19989 1.00900 0.91589 1.02462 1.20807 0.95414 0.96902 1.02575 1.21100 0.92805 0.90184 0.84549 0.92688 1.86749 1.56976 1.54473 1.36561 0.92943 0.87304 0.94374 0.90537 0.92048 0.82500 0.85098 0.80310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.22 11.31 55.43 0.63 -24.60 15 2 C 0.06 1.63 5.26 -17.82 -0.09 1.54 15 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.50 -13.85 8.41 -34.44 -0.29 -14.14 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 9 C 0.06 1.48 1.74 -91.70 -0.16 1.32 15 10 H 0.04 1.06 8.10 -51.93 -0.42 0.64 15 11 C -0.10 -2.41 5.11 -26.56 -0.14 -2.54 15 12 C -0.05 -1.03 6.26 -27.45 -0.17 -1.20 15 13 C -0.14 -2.66 6.35 -35.24 -0.22 -2.89 15 14 S 0.05 0.83 23.31 -107.50 -2.51 -1.68 15 15 C -0.23 -3.32 11.20 28.89 0.32 -2.99 15 16 C -0.12 -1.89 9.56 -41.06 -0.39 -2.28 15 17 C -0.15 -2.80 5.56 -104.75 -0.58 -3.38 15 18 C 0.17 3.77 3.06 -27.10 -0.08 3.68 15 19 H 0.06 1.17 8.12 -51.93 -0.42 0.75 15 20 O -0.55 -11.44 13.10 -35.23 -0.46 -11.91 15 21 H 0.26 7.04 8.31 -40.82 -0.34 6.71 15 22 H 0.11 2.77 5.88 -51.93 -0.31 2.46 15 23 H 0.04 0.85 8.11 -51.93 -0.42 0.42 15 24 H 0.08 1.53 8.14 -51.93 -0.42 1.11 15 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 26 H 0.16 1.77 8.06 -52.48 -0.42 1.35 15 27 H 0.13 1.72 7.44 -52.49 -0.39 1.33 15 28 H 0.35 5.42 8.14 45.56 0.37 5.79 15 LS Contribution 247.29 15.07 3.73 3.73 Total: -1.00 -29.58 247.29 -7.84 -37.42 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -2.40 Total: 3.57 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -1.81 Total: -22.89 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.63 Total: -24.60 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.46 Total: -11.91 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.58 -7.84 -37.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712228.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.355 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds