Wall clock time and date at job start Mon Mar 30 2020 03:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.50027 * 299.99924 * 9 7 2 11 11 C 1.53159 * 109.50030 * 60.07104 * 9 7 2 12 12 C 1.53166 * 108.95821 * 190.51030 * 11 9 7 13 13 C 1.51407 * 108.70369 * 310.34072 * 12 11 9 14 14 S 1.75827 * 125.24189 * 196.29735 * 13 12 11 15 15 C 1.75725 * 91.07943 * 179.97438 * 14 13 12 16 16 C 1.32914 * 109.58592 * 0.02562 * 15 14 13 17 17 C 1.34631 * 124.78993 * 16.29822 * 13 12 11 18 18 C 1.52292 * 122.83580 * 0.06872 * 17 13 12 19 19 H 1.09002 * 109.55488 * 257.61809 * 18 17 13 20 20 O 1.42896 * 109.61226 * 137.20896 * 18 17 13 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.55295 * 310.35622 * 11 9 7 23 23 H 1.09001 * 109.55350 * 70.56440 * 11 9 7 24 24 H 1.09002 * 109.59785 * 70.10566 * 12 11 9 25 25 H 1.08992 * 109.59389 * 190.41456 * 12 11 9 26 26 H 1.08004 * 125.20986 * 179.97438 * 15 14 13 27 27 H 1.07998 * 122.15075 * 180.02562 * 16 15 14 28 28 H 0.96699 * 114.00548 * 60.67520 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 1 0.6239 -2.5580 0.8878 11 6 0.3721 -2.5809 -1.2533 12 6 -0.5780 -3.7746 -1.1171 13 6 0.2280 -4.9939 -0.7221 14 16 -0.3269 -6.6583 -0.8388 15 6 1.1998 -7.2471 -0.1981 16 6 2.0024 -6.2187 0.0565 17 6 1.4799 -4.9602 -0.2281 18 6 2.2445 -3.6624 -0.0039 19 1 2.9691 -3.5226 -0.8061 20 8 2.9222 -3.7159 1.2531 21 1 -0.4849 0.8400 0.0004 22 1 -0.2072 -1.6630 -1.3528 23 1 1.0017 -2.7122 -2.1333 24 1 -1.3222 -3.5637 -0.3491 25 1 -1.0764 -3.9555 -2.0693 26 1 1.4477 -8.2856 -0.0354 27 1 2.9963 -6.3510 0.4578 28 1 3.5686 -4.4318 1.3213 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259712228.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:03 Heat of formation + Delta-G solvation = -48.539362 kcal Electronic energy + Delta-G solvation = -13408.615289 eV Core-core repulsion = 11128.765329 eV Total energy + Delta-G solvation = -2279.849960 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.38238 -36.87622 -36.31253 -34.09834 -30.85385 -29.34775 -26.80213 -24.21085 -23.57034 -21.43220 -19.21759 -18.44587 -18.23290 -17.59917 -16.58788 -16.07007 -15.30884 -14.90843 -14.32628 -14.12292 -13.94335 -13.69387 -13.59842 -12.87305 -12.72651 -12.50214 -12.31749 -12.01789 -11.86460 -11.75370 -11.24399 -11.05993 -10.57637 -10.37797 -9.40764 -9.19937 -8.07518 -6.20293 0.12592 0.74539 1.11262 1.42781 1.44826 1.52186 1.78351 2.45315 3.17705 3.71233 3.94289 4.00345 4.22466 4.44217 4.52457 4.61646 4.70768 4.78236 4.91292 5.11056 5.24736 5.32583 5.52004 5.62627 5.73516 5.90474 6.03607 6.36402 6.86393 7.08273 7.46310 8.97095 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.049076 B = 0.008527 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.401944 B = 3282.981196 C = 3744.258699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.050 0.950 9 C 0.057 3.943 10 H -0.009 1.009 11 C -0.097 4.097 12 C -0.045 4.045 13 C -0.181 4.181 14 S 0.099 5.901 15 C -0.209 4.209 16 C -0.136 4.136 17 C -0.156 4.156 18 C 0.179 3.821 19 H 0.054 0.946 20 O -0.566 6.566 21 H 0.262 0.738 22 H 0.079 0.921 23 H 0.039 0.961 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.198 0.802 27 H 0.159 0.841 28 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.612 -12.929 -2.578 13.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.068 0.932 9 C 0.038 3.962 10 H 0.009 0.991 11 C -0.137 4.137 12 C -0.084 4.084 13 C -0.298 4.298 14 S 0.364 5.636 15 C -0.344 4.344 16 C -0.166 4.166 17 C -0.168 4.168 18 C 0.119 3.881 19 H 0.072 0.928 20 O -0.372 6.372 21 H 0.071 0.929 22 H 0.097 0.903 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.215 0.785 27 H 0.176 0.824 28 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.263 -13.046 -2.940 13.376 hybrid contribution 1.875 1.265 0.533 2.324 sum 1.611 -11.781 -2.408 12.132 Atomic orbital electron populations 1.69982 1.07042 1.27254 1.51403 1.25705 0.95741 1.02271 0.94873 0.85656 0.78434 0.79075 0.78746 1.19309 1.20760 1.20234 1.21398 0.92897 0.91754 1.50223 0.93212 1.18569 0.92382 0.91435 0.93808 0.99064 1.21479 0.97436 0.97407 0.97368 1.20333 0.96770 0.90500 1.00835 1.25093 0.98534 0.98689 1.07448 1.83735 1.17940 0.97183 1.64747 1.25663 0.96450 1.03998 1.08307 1.20125 1.02626 0.90254 1.03553 1.20741 0.95644 0.97110 1.03343 1.20729 0.92254 0.90492 0.84664 0.92830 1.86671 1.57972 1.56224 1.36306 0.92921 0.90264 0.94198 0.91885 0.89769 0.78500 0.82360 0.77420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.47 11.31 21.45 0.24 -53.23 15 2 C 0.01 0.70 5.26 84.66 0.45 1.14 15 3 Si 0.96 44.50 29.54 68.60 2.03 46.52 15 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 7 C -0.52 -29.97 8.41 25.60 0.22 -29.76 15 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 15 9 C 0.06 2.98 1.74 -11.49 -0.02 2.96 15 10 H -0.01 -0.53 8.10 -2.39 -0.02 -0.55 15 11 C -0.10 -4.66 5.11 30.70 0.16 -4.50 15 12 C -0.05 -1.81 6.26 30.13 0.19 -1.62 15 13 C -0.18 -6.68 6.35 25.08 0.16 -6.52 15 14 S 0.10 2.76 23.31 -56.49 -1.32 1.44 15 15 C -0.21 -5.13 11.20 66.65 0.75 -4.38 15 16 C -0.14 -3.89 9.56 21.33 0.20 -3.69 15 17 C -0.16 -5.84 5.56 -19.95 -0.11 -5.95 15 18 C 0.18 7.83 3.06 30.35 0.09 7.92 15 19 H 0.05 2.31 8.12 -2.39 -0.02 2.29 15 20 O -0.57 -23.73 13.10 -148.98 -1.95 -25.69 15 21 H 0.26 14.50 8.31 -92.71 -0.77 13.73 15 22 H 0.08 4.23 5.88 -2.39 -0.01 4.22 15 23 H 0.04 1.83 8.11 -2.39 -0.02 1.81 15 24 H 0.06 2.63 8.14 -2.39 -0.02 2.61 15 25 H 0.08 2.89 8.14 -2.39 -0.02 2.87 15 26 H 0.20 3.23 8.06 -2.91 -0.02 3.21 15 27 H 0.16 3.55 7.44 -2.91 -0.02 3.53 15 28 H 0.38 11.09 8.14 -74.06 -0.60 10.49 15 Total: -1.00 -65.43 247.29 1.65 -63.78 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.57 Total: 11.56 kcal Atomic # 6 Polarization: -46.48 SS G_CDS: 2.08 Total: -44.40 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.24 Total: -53.23 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -1.95 Total: -25.69 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.32 Total: 1.44 kcal Total: -65.43 1.65 -63.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712228.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.241 kcal (2) G-P(sol) polarization free energy of solvation -65.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds