Wall clock time and date at job start Mon Mar 30 2020 03:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47131 * 270.00096 * 3 2 1 5 5 H 1.48499 * 109.46832 * 29.99631 * 3 2 1 6 6 H 1.48493 * 109.47404 * 149.99698 * 3 2 1 7 7 C 1.37880 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99713 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00196 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.49851 * 59.99979 * 9 7 2 11 11 C 1.53150 * 109.49802 * 299.92777 * 9 7 2 12 12 C 1.53170 * 108.95803 * 169.45073 * 11 9 7 13 13 C 1.51408 * 108.70531 * 49.66388 * 12 11 9 14 14 S 1.75827 * 125.24642 * 163.69528 * 13 12 11 15 15 C 1.75729 * 91.07952 * 180.02562 * 14 13 12 16 16 C 1.32911 * 109.58411 * 359.97438 * 15 14 13 17 17 C 1.34632 * 124.78463 * 343.69796 * 13 12 11 18 18 C 1.52355 * 122.84177 * 359.96470 * 17 13 12 19 19 H 1.09001 * 109.62861 * 222.76780 * 18 17 13 20 20 O 1.42893 * 109.58224 * 102.32330 * 18 17 13 21 21 H 0.96996 * 120.00047 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.56140 * 289.29702 * 11 9 7 23 23 H 1.08997 * 109.55587 * 49.51157 * 11 9 7 24 24 H 1.09003 * 109.59819 * 169.42885 * 12 11 9 25 25 H 1.09001 * 109.60191 * 289.89890 * 12 11 9 26 26 H 1.08002 * 125.20974 * 180.02562 * 15 14 13 27 27 H 1.07999 * 122.15421 * 180.02562 * 16 15 14 28 28 H 0.96699 * 114.00113 * 60.74297 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8750 -0.6801 0.8910 11 6 4.0232 -0.4741 -1.2500 12 6 5.5317 -0.2474 -1.1117 13 6 6.1849 -1.5545 -0.7153 14 16 7.9040 -1.9055 -0.8295 15 6 7.6504 -3.5219 -0.1884 16 6 6.3583 -3.7032 0.0646 17 6 5.5295 -2.6220 -0.2217 18 6 4.0222 -2.6362 -0.0001 19 1 3.7974 -3.1041 0.9583 20 8 3.3903 -3.3671 -1.0529 21 1 -0.4850 0.8400 -0.0004 22 1 3.8254 -1.0863 -2.1299 23 1 3.5164 0.4855 -1.3517 24 1 5.9394 0.0909 -2.0644 25 1 5.7198 0.5030 -0.3438 26 1 8.4259 -4.2554 -0.0243 27 1 5.9758 -4.6298 0.4665 28 1 3.6682 -4.2914 -1.1119 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259712230.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:05 Heat of formation + Delta-G solvation = -18.580585 kcal Electronic energy + Delta-G solvation = -13535.416388 eV Core-core repulsion = 11256.865538 eV Total energy + Delta-G solvation = -2278.550850 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.08661 -35.58836 -34.47769 -32.26737 -29.57481 -28.28283 -24.83883 -22.96012 -22.12298 -19.72786 -18.04053 -17.12391 -16.61872 -15.85615 -14.82201 -14.68853 -13.95491 -13.44085 -13.10737 -12.83034 -12.71990 -12.30200 -11.80530 -11.66156 -11.43569 -10.88190 -10.68776 -10.44904 -10.04108 -9.90278 -9.40008 -9.13908 -8.83899 -8.48388 -8.30352 -8.12910 -6.00242 -3.97498 1.25185 1.84998 2.20863 2.93293 3.28152 3.38153 3.40953 4.44302 5.03119 5.15770 5.20856 5.37984 5.47806 5.64118 5.74426 5.83587 6.03504 6.16706 6.24266 6.29516 6.49986 6.73986 6.79843 7.01542 7.02637 7.47801 7.77362 8.39384 8.63121 9.09842 9.60991 11.13224 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.042243 B = 0.010105 C = 0.008576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.665895 B = 2770.269325 C = 3264.159242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.496 4.496 8 H 0.081 0.919 9 C 0.022 3.978 10 H 0.039 0.961 11 C -0.114 4.114 12 C -0.059 4.059 13 C -0.138 4.138 14 S 0.061 5.939 15 C -0.226 4.226 16 C -0.119 4.119 17 C -0.147 4.147 18 C 0.186 3.814 19 H 0.058 0.942 20 O -0.533 6.533 21 H 0.262 0.738 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.159 0.841 27 H 0.135 0.865 28 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.620 -4.429 -0.761 15.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.711 3.289 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.534 4.534 8 H 0.099 0.901 9 C 0.003 3.997 10 H 0.057 0.943 11 C -0.153 4.153 12 C -0.098 4.098 13 C -0.255 4.255 14 S 0.326 5.674 15 C -0.361 4.361 16 C -0.150 4.150 17 C -0.159 4.159 18 C 0.125 3.875 19 H 0.075 0.925 20 O -0.335 6.335 21 H 0.072 0.928 22 H 0.090 0.910 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.177 0.823 27 H 0.153 0.847 28 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 15.486 -2.945 -1.333 15.820 hybrid contribution -0.303 -0.451 0.533 0.761 sum 15.183 -3.396 -0.800 15.579 Atomic orbital electron populations 1.69891 1.06185 1.26699 1.51310 1.25017 0.94716 0.98775 0.94929 0.86954 0.80121 0.84028 0.77827 1.20513 1.22490 1.18979 1.20909 0.88085 0.94757 1.49682 0.90114 1.19255 0.97620 0.89133 0.93695 0.94319 1.22037 0.90374 1.00915 1.02011 1.20557 0.97540 0.91242 1.00477 1.24948 0.94419 1.00793 1.05388 1.83962 1.07788 1.10306 1.65394 1.25184 1.00188 1.00095 1.10617 1.20095 0.92654 0.99852 1.02370 1.20803 0.99441 0.92901 1.02730 1.20677 0.82246 0.95383 0.89189 0.92460 1.86825 1.67389 1.24806 1.54524 0.92777 0.91008 0.92404 0.91307 0.90715 0.82313 0.84742 0.80152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.96 55.43 0.77 -27.12 15 2 C 0.07 1.92 5.45 -17.82 -0.10 1.83 15 3 Si 0.88 21.80 24.44 -169.99 -4.15 17.65 15 4 H -0.28 -6.70 6.80 56.52 0.38 -6.31 15 5 H -0.30 -7.41 7.11 56.52 0.40 -7.00 15 6 H -0.26 -6.18 6.53 56.52 0.37 -5.82 15 7 C -0.50 -14.06 8.71 -34.44 -0.30 -14.36 15 8 H 0.08 2.51 7.68 -52.49 -0.40 2.11 15 9 C 0.02 0.51 1.49 -91.70 -0.14 0.38 15 10 H 0.04 0.93 7.16 -51.93 -0.37 0.56 15 11 C -0.11 -2.52 4.67 -26.57 -0.12 -2.64 15 12 C -0.06 -1.07 6.26 -27.45 -0.17 -1.24 15 13 C -0.14 -2.42 6.35 -35.24 -0.22 -2.65 15 14 S 0.06 0.86 23.31 -107.50 -2.51 -1.65 15 15 C -0.23 -2.97 11.20 28.89 0.32 -2.65 15 16 C -0.12 -1.73 10.00 -41.06 -0.41 -2.14 15 17 C -0.15 -2.60 5.40 -104.71 -0.57 -3.17 15 18 C 0.19 3.77 3.28 -27.07 -0.09 3.68 15 19 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 20 O -0.53 -10.85 12.02 -35.23 -0.42 -11.27 15 21 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 22 H 0.07 1.63 7.70 -51.93 -0.40 1.23 15 23 H 0.06 1.34 3.29 -51.93 -0.17 1.17 15 24 H 0.07 1.11 8.14 -51.93 -0.42 0.68 15 25 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 26 H 0.16 1.61 8.06 -52.49 -0.42 1.19 15 27 H 0.13 1.63 8.06 -52.49 -0.42 1.20 15 28 H 0.35 5.32 9.09 45.56 0.41 5.73 15 LS Contribution 240.74 15.07 3.63 3.63 Total: -1.00 -31.41 240.74 -6.71 -38.11 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -2.23 Total: 3.61 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -1.79 Total: -22.96 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: 0.77 Total: -27.12 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -0.42 Total: -11.27 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.15 Total: 17.65 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.41 -6.71 -38.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712230.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.533 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds