Wall clock time and date at job start Mon Mar 30 2020 03:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47131 * 270.00096 * 3 2 1 5 5 H 1.48499 * 109.46832 * 29.99631 * 3 2 1 6 6 H 1.48493 * 109.47404 * 149.99698 * 3 2 1 7 7 C 1.37880 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99713 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00196 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.49851 * 59.99979 * 9 7 2 11 11 C 1.53150 * 109.49802 * 299.92777 * 9 7 2 12 12 C 1.53170 * 108.95803 * 169.45073 * 11 9 7 13 13 C 1.51408 * 108.70531 * 49.66388 * 12 11 9 14 14 S 1.75827 * 125.24642 * 163.69528 * 13 12 11 15 15 C 1.75729 * 91.07952 * 180.02562 * 14 13 12 16 16 C 1.32911 * 109.58411 * 359.97438 * 15 14 13 17 17 C 1.34632 * 124.78463 * 343.69796 * 13 12 11 18 18 C 1.52355 * 122.84177 * 359.96470 * 17 13 12 19 19 H 1.09001 * 109.62861 * 222.76780 * 18 17 13 20 20 O 1.42893 * 109.58224 * 102.32330 * 18 17 13 21 21 H 0.96996 * 120.00047 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.56140 * 289.29702 * 11 9 7 23 23 H 1.08997 * 109.55587 * 49.51157 * 11 9 7 24 24 H 1.09003 * 109.59819 * 169.42885 * 12 11 9 25 25 H 1.09001 * 109.60191 * 289.89890 * 12 11 9 26 26 H 1.08002 * 125.20974 * 180.02562 * 15 14 13 27 27 H 1.07999 * 122.15421 * 180.02562 * 16 15 14 28 28 H 0.96699 * 114.00113 * 60.74297 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8750 -0.6801 0.8910 11 6 4.0232 -0.4741 -1.2500 12 6 5.5317 -0.2474 -1.1117 13 6 6.1849 -1.5545 -0.7153 14 16 7.9040 -1.9055 -0.8295 15 6 7.6504 -3.5219 -0.1884 16 6 6.3583 -3.7032 0.0646 17 6 5.5295 -2.6220 -0.2217 18 6 4.0222 -2.6362 -0.0001 19 1 3.7974 -3.1041 0.9583 20 8 3.3903 -3.3671 -1.0529 21 1 -0.4850 0.8400 -0.0004 22 1 3.8254 -1.0863 -2.1299 23 1 3.5164 0.4855 -1.3517 24 1 5.9394 0.0909 -2.0644 25 1 5.7198 0.5030 -0.3438 26 1 8.4259 -4.2554 -0.0243 27 1 5.9758 -4.6298 0.4665 28 1 3.6682 -4.2914 -1.1119 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259712230.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:05 Heat of formation + Delta-G solvation = -41.433622 kcal Electronic energy + Delta-G solvation = -13536.407370 eV Core-core repulsion = 11256.865538 eV Total energy + Delta-G solvation = -2279.541832 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.52051 -37.00181 -36.12531 -34.28996 -31.30839 -29.64935 -26.71678 -24.34446 -23.64722 -21.35707 -19.58361 -18.54076 -18.41677 -17.38305 -16.61710 -16.10233 -15.50033 -15.04362 -14.57059 -14.43269 -14.26922 -13.96045 -13.37661 -13.22593 -12.82964 -12.46331 -12.34919 -11.97114 -11.76953 -11.75483 -11.24226 -11.01106 -10.66510 -10.53353 -9.45280 -9.27532 -8.24996 -6.27246 0.09221 0.70678 1.08765 1.30433 1.35883 1.46672 1.74411 2.34684 3.07094 3.72192 3.83180 3.92918 4.08785 4.19423 4.45181 4.50052 4.61068 4.65769 4.81544 4.91776 4.99478 5.15406 5.29287 5.48853 5.61342 5.67244 5.73501 6.34989 6.77347 7.10564 7.35766 8.92259 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.042243 B = 0.010105 C = 0.008576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.665895 B = 2770.269325 C = 3264.159242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.005 3.995 3 Si 0.945 3.055 4 H -0.265 1.265 5 H -0.299 1.299 6 H -0.240 1.240 7 C -0.500 4.500 8 H 0.034 0.966 9 C 0.017 3.983 10 H 0.037 0.963 11 C -0.111 4.111 12 C -0.054 4.054 13 C -0.174 4.174 14 S 0.109 5.891 15 C -0.209 4.209 16 C -0.135 4.135 17 C -0.155 4.155 18 C 0.187 3.813 19 H 0.055 0.945 20 O -0.559 6.559 21 H 0.264 0.736 22 H 0.055 0.945 23 H 0.045 0.955 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.196 0.804 27 H 0.156 0.844 28 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.274 -4.361 -0.853 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.227 1.227 6 H -0.164 1.164 7 C -0.538 4.538 8 H 0.052 0.948 9 C -0.001 4.001 10 H 0.055 0.945 11 C -0.149 4.149 12 C -0.093 4.093 13 C -0.292 4.292 14 S 0.374 5.626 15 C -0.344 4.344 16 C -0.165 4.165 17 C -0.168 4.168 18 C 0.126 3.874 19 H 0.073 0.927 20 O -0.364 6.364 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.213 0.787 27 H 0.173 0.827 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 19.171 -2.906 -1.428 19.442 hybrid contribution -1.444 -0.625 0.553 1.668 sum 17.727 -3.531 -0.876 18.097 Atomic orbital electron populations 1.70058 1.08243 1.27812 1.53379 1.25918 0.95498 1.03006 0.94637 0.85892 0.79560 0.78700 0.78697 1.19156 1.22664 1.16353 1.21162 0.90937 0.92996 1.48754 0.94757 1.19207 0.94285 0.92164 0.94485 0.94504 1.21832 0.93580 0.99431 1.00102 1.20447 0.94492 0.92306 1.02091 1.25003 0.97195 1.00429 1.06543 1.83799 1.03915 1.10480 1.64436 1.25676 1.00407 1.00183 1.08105 1.20172 0.92906 0.99919 1.03463 1.20606 0.97697 0.94582 1.03876 1.20424 0.84570 0.93280 0.89114 0.92711 1.86748 1.68329 1.26731 1.54636 0.92724 0.92598 0.93714 0.89017 0.89974 0.78675 0.82667 0.77591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.44 13.96 21.45 0.30 -61.14 15 2 C 0.01 0.31 5.45 84.66 0.46 0.77 15 3 Si 0.95 45.37 24.44 68.60 1.68 47.05 15 4 H -0.27 -12.12 6.80 99.48 0.68 -11.44 15 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 15 6 H -0.24 -10.45 6.53 99.48 0.65 -9.80 15 7 C -0.50 -29.51 8.71 25.60 0.22 -29.28 15 8 H 0.03 2.27 7.68 -2.91 -0.02 2.25 15 9 C 0.02 0.82 1.49 -11.50 -0.02 0.81 15 10 H 0.04 1.76 7.16 -2.39 -0.02 1.74 15 11 C -0.11 -4.79 4.67 30.70 0.14 -4.65 15 12 C -0.05 -1.85 6.26 30.13 0.19 -1.66 15 13 C -0.17 -5.63 6.35 25.08 0.16 -5.47 15 14 S 0.11 2.61 23.31 -56.49 -1.32 1.30 15 15 C -0.21 -4.49 11.20 66.65 0.75 -3.74 15 16 C -0.13 -3.46 10.00 21.33 0.21 -3.24 15 17 C -0.16 -5.17 5.40 -19.92 -0.11 -5.28 15 18 C 0.19 7.58 3.28 30.38 0.10 7.68 15 19 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 20 O -0.56 -23.13 12.02 -148.98 -1.79 -24.92 15 21 H 0.26 15.90 8.31 -92.71 -0.77 15.13 15 22 H 0.06 2.55 7.70 -2.39 -0.02 2.53 15 23 H 0.04 2.02 3.29 -2.39 -0.01 2.02 15 24 H 0.09 2.66 8.14 -2.39 -0.02 2.64 15 25 H 0.08 2.65 8.14 -2.39 -0.02 2.63 15 26 H 0.20 2.74 8.06 -2.91 -0.02 2.72 15 27 H 0.16 3.23 8.06 -2.91 -0.02 3.21 15 28 H 0.38 11.26 9.09 -74.06 -0.67 10.58 15 Total: -1.00 -70.41 240.74 1.40 -69.02 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.42 Total: 12.75 kcal Atomic # 6 Polarization: -46.17 SS G_CDS: 2.11 Total: -44.06 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.30 Total: -61.14 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -1.79 Total: -24.92 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.68 Total: 47.05 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.32 Total: 1.30 kcal Total: -70.41 1.40 -69.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712230.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.584 kcal (2) G-P(sol) polarization free energy of solvation -70.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds