Wall clock time and date at job start Mon Mar 30 2020 03:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00070 * 2 1 4 4 H 1.48503 * 109.47163 * 239.99574 * 3 2 1 5 5 H 1.48500 * 109.47214 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47239 * 119.99954 * 3 2 1 7 7 C 1.37879 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00581 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99765 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.49466 * 299.92832 * 9 7 2 11 11 C 1.53154 * 109.50147 * 59.99626 * 9 7 2 12 12 C 1.53161 * 108.96607 * 190.54241 * 11 9 7 13 13 C 1.51411 * 108.83127 * 310.26328 * 12 11 9 14 14 S 1.75522 * 125.46074 * 196.30580 * 13 12 11 15 15 C 1.75734 * 91.14993 * 180.02562 * 14 13 12 16 16 C 1.32912 * 109.58139 * 0.02827 * 15 14 13 17 17 C 1.34947 * 124.55066 * 16.40702 * 13 12 11 18 18 C 1.52282 * 122.91830 * 359.91766 * 17 13 12 19 19 H 1.08998 * 109.58139 * 137.31722 * 18 17 13 20 20 O 1.42902 * 109.57745 * 257.72139 * 18 17 13 21 21 H 0.96996 * 119.99697 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.55214 * 70.69355 * 11 9 7 23 23 H 1.09001 * 109.55466 * 310.39072 * 11 9 7 24 24 H 1.09002 * 109.60021 * 70.10747 * 12 11 9 25 25 H 1.09006 * 109.59752 * 190.42157 * 12 11 9 26 26 H 1.07992 * 125.20677 * 180.02562 * 15 14 13 27 27 H 1.07999 * 122.14585 * 180.02562 * 16 15 14 28 28 H 0.96697 * 114.00149 * 299.31158 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6248 -2.5577 0.8908 11 6 0.3706 -2.5813 -1.2500 12 6 -0.5798 -3.7744 -1.1123 13 6 0.2235 -4.9963 -0.7193 14 16 -0.3293 -6.6582 -0.8338 15 6 1.1978 -7.2474 -0.1940 16 6 2.0009 -6.2191 0.0596 17 6 1.4784 -4.9605 -0.2245 18 6 2.2439 -3.6629 -0.0027 19 1 2.7623 -3.7037 0.9552 20 8 3.1923 -3.4805 -1.0560 21 1 -0.4849 0.8400 -0.0004 22 1 0.9992 -2.7151 -2.1304 23 1 -0.2084 -1.6631 -1.3495 24 1 -1.3232 -3.5629 -0.3437 25 1 -1.0793 -3.9557 -2.0640 26 1 1.4456 -8.2859 -0.0317 27 1 2.9950 -6.3516 0.4601 28 1 3.8533 -4.1836 -1.1163 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259712232.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:07 Heat of formation + Delta-G solvation = -46.668612 kcal Electronic energy + Delta-G solvation = -13453.193040 eV Core-core repulsion = 11173.424202 eV Total energy + Delta-G solvation = -2279.768838 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.35356 -36.93055 -35.99778 -34.05679 -30.87806 -29.37066 -26.78902 -24.13328 -23.66915 -21.34642 -19.40338 -18.37238 -18.05587 -17.24358 -16.60393 -15.95095 -15.29672 -14.92895 -14.69029 -14.09917 -13.96300 -13.62412 -13.31574 -12.94691 -12.74763 -12.46593 -12.36827 -12.01492 -11.83012 -11.72812 -11.10537 -10.88452 -10.53746 -10.31842 -9.41130 -9.25262 -8.05090 -6.16117 0.12716 0.74436 1.12349 1.43031 1.45075 1.52460 1.77587 2.46934 3.20740 3.84718 3.96207 4.02587 4.20289 4.42129 4.54371 4.63614 4.73311 4.84238 4.96604 5.13445 5.25158 5.39497 5.54930 5.65391 5.76218 5.93330 6.07076 6.41578 6.90406 7.13933 7.50296 8.99455 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.051714 B = 0.008467 C = 0.007585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.306241 B = 3306.291352 C = 3690.628155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.010 3.990 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.051 0.949 9 C 0.051 3.949 10 H 0.008 0.992 11 C -0.095 4.095 12 C -0.046 4.046 13 C -0.175 4.175 14 S 0.102 5.898 15 C -0.212 4.212 16 C -0.134 4.134 17 C -0.159 4.159 18 C 0.180 3.820 19 H 0.051 0.949 20 O -0.557 6.557 21 H 0.260 0.740 22 H 0.029 0.971 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.197 0.803 27 H 0.158 0.842 28 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.480 -13.232 -0.772 13.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.033 3.967 10 H 0.026 0.974 11 C -0.134 4.134 12 C -0.086 4.086 13 C -0.292 4.292 14 S 0.367 5.633 15 C -0.346 4.346 16 C -0.164 4.164 17 C -0.172 4.172 18 C 0.119 3.881 19 H 0.069 0.931 20 O -0.362 6.362 21 H 0.069 0.931 22 H 0.048 0.952 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.214 0.786 27 H 0.175 0.825 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.366 -13.321 -1.344 13.393 hybrid contribution 1.830 1.263 0.615 2.307 sum 1.463 -12.058 -0.729 12.168 Atomic orbital electron populations 1.69983 1.06965 1.27087 1.51849 1.25695 0.95719 1.02187 0.95197 0.85683 0.78415 0.79297 0.78651 1.20170 1.20876 1.19643 1.21351 0.93046 0.91531 1.49404 0.93045 1.18670 0.92279 0.91866 0.93881 0.97365 1.21403 0.97169 0.96721 0.98119 1.20341 0.96835 0.90773 1.00603 1.25180 0.99088 0.98637 1.06281 1.83688 1.17927 0.97118 1.64581 1.25668 0.96490 1.04003 1.08474 1.20191 1.02455 0.90326 1.03392 1.20761 0.95487 0.97058 1.03858 1.20618 0.88576 0.90229 0.88638 0.93072 1.86724 1.44054 1.50668 1.54795 0.93062 0.95248 0.91052 0.91430 0.90508 0.78552 0.82469 0.77822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.63 11.31 21.45 0.24 -53.38 15 2 C 0.01 0.55 5.26 84.65 0.45 1.00 15 3 Si 0.95 44.87 29.54 68.60 2.03 46.90 15 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 15 5 H -0.28 -12.97 7.11 99.48 0.71 -12.27 15 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 7 C -0.52 -29.39 8.14 25.60 0.21 -29.18 15 8 H 0.05 2.95 7.44 -2.91 -0.02 2.93 15 9 C 0.05 2.67 1.90 -11.49 -0.02 2.65 15 10 H 0.01 0.47 8.10 -2.38 -0.02 0.46 15 11 C -0.09 -4.71 5.10 30.70 0.16 -4.55 15 12 C -0.05 -1.89 6.25 30.13 0.19 -1.70 15 13 C -0.17 -6.47 6.36 25.15 0.16 -6.31 15 14 S 0.10 2.83 23.30 -56.49 -1.32 1.52 15 15 C -0.21 -5.11 11.20 66.65 0.75 -4.37 15 16 C -0.13 -3.78 10.00 21.33 0.21 -3.56 15 17 C -0.16 -5.87 5.41 -19.88 -0.11 -5.98 15 18 C 0.18 7.72 3.28 30.35 0.10 7.82 15 19 H 0.05 2.12 8.14 -2.39 -0.02 2.10 15 20 O -0.56 -23.21 12.03 -148.98 -1.79 -25.01 15 21 H 0.26 14.49 8.31 -92.71 -0.77 13.72 15 22 H 0.03 1.49 7.70 -2.39 -0.02 1.47 15 23 H 0.07 3.96 5.88 -2.39 -0.01 3.94 15 24 H 0.07 2.80 8.14 -2.39 -0.02 2.78 15 25 H 0.08 2.79 8.14 -2.38 -0.02 2.77 15 26 H 0.20 3.18 8.06 -2.91 -0.02 3.15 15 27 H 0.16 3.54 8.06 -2.91 -0.02 3.52 15 28 H 0.37 11.24 9.09 -74.06 -0.67 10.57 15 Total: -1.00 -64.57 247.44 1.75 -62.82 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.50 Total: 11.34 kcal Atomic # 6 Polarization: -46.28 SS G_CDS: 2.09 Total: -44.19 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.24 Total: -53.38 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -1.79 Total: -25.01 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.32 Total: 1.52 kcal Total: -64.57 1.75 -62.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712232.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.149 kcal (2) G-P(sol) polarization free energy of solvation -64.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds