Wall clock time and date at job start Mon Mar 30 2020 02:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.46151 * 302.63590 * 9 7 2 11 11 C 1.54086 * 110.52424 * 180.02562 * 9 7 2 12 12 N 1.47097 * 103.77556 * 241.36320 * 11 9 7 13 13 C 1.39496 * 125.55928 * 179.97438 * 12 11 9 14 14 C 1.42025 * 126.89275 * 4.72070 * 13 12 11 15 15 C 1.35254 * 103.95383 * 179.90597 * 14 13 12 16 16 O 1.34085 * 106.60830 * 0.34342 * 15 14 13 17 17 N 1.20908 * 111.74739 * 359.76607 * 16 15 14 18 18 C 1.34004 * 108.87764 * 0.02562 * 12 11 9 19 19 O 1.21505 * 123.07063 * 179.97438 * 18 12 11 20 20 O 1.33767 * 113.86297 * 359.97438 * 18 12 11 21 21 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 22 22 H 1.08997 * 110.56432 * 359.93626 * 11 9 7 23 23 H 1.08998 * 110.56456 * 122.79696 * 11 9 7 24 24 H 1.07991 * 128.02520 * 0.03015 * 14 13 12 25 25 H 1.07991 * 126.69279 * 180.11021 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 1 0.5841 -2.5496 0.8728 11 6 2.2309 -3.6884 0.0184 12 7 1.9252 -4.4005 -1.2318 13 6 2.5576 -5.5601 -1.6805 14 6 3.5371 -6.3198 -0.9872 15 6 3.8251 -7.3327 -1.8359 16 8 3.0673 -7.1464 -2.9262 17 7 2.3719 -6.1624 -2.8256 18 6 0.9407 -3.7530 -1.8700 19 8 0.4861 -4.1215 -2.9348 20 8 0.5043 -2.6637 -1.2278 21 1 -0.4850 -0.8401 -0.0004 22 1 3.2620 -3.3350 0.0155 23 1 2.0477 -4.3309 0.8796 24 1 3.9536 -6.1333 -0.0084 25 1 4.5308 -8.1331 -1.6695 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259721402.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:34 Heat of formation + Delta-G solvation = -27.799795 kcal Electronic energy + Delta-G solvation = -15183.030055 eV Core-core repulsion = 12357.786216 eV Total energy + Delta-G solvation = -2825.243839 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.98767 -42.59204 -38.52928 -37.27472 -35.17453 -33.80901 -32.68533 -30.75066 -26.80786 -25.32969 -24.62701 -23.44822 -21.57672 -19.99325 -19.28133 -18.74704 -18.09449 -17.82919 -17.48729 -16.09292 -15.71476 -15.57841 -15.23210 -14.74709 -14.63024 -14.19333 -13.99024 -12.87269 -12.66091 -12.51515 -12.34977 -12.16124 -11.94147 -11.77892 -10.86421 -10.73790 -10.71016 -9.76122 -8.85846 -6.74264 0.57175 0.97728 1.06872 1.54703 1.61270 1.80707 1.83095 2.45741 2.54204 2.60983 3.06228 3.23128 3.41754 3.77036 4.06422 4.14882 4.27852 4.49983 4.70059 4.82298 5.02186 5.35605 5.50102 5.89904 6.22829 6.32307 6.75738 7.19416 7.44825 8.52520 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.050552 B = 0.007564 C = 0.007082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.750576 B = 3700.947730 C = 3952.893718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.014 4.014 3 Si 1.121 2.879 4 H -0.286 1.286 5 H -0.250 1.250 6 H -0.277 1.277 7 C -0.630 4.630 8 H 0.082 0.918 9 C 0.159 3.841 10 H 0.076 0.924 11 C 0.102 3.898 12 N -0.544 5.544 13 C 0.235 3.765 14 C -0.244 4.244 15 C -0.015 4.015 16 O 0.100 5.900 17 N -0.419 5.419 18 C 0.630 3.370 19 O -0.564 6.564 20 O -0.353 6.353 21 H 0.264 0.736 22 H 0.112 0.888 23 H 0.125 0.875 24 H 0.211 0.789 25 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.266 -12.371 4.722 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.218 4.218 3 Si 0.940 3.060 4 H -0.212 1.212 5 H -0.174 1.174 6 H -0.202 1.202 7 C -0.666 4.666 8 H 0.100 0.900 9 C 0.107 3.893 10 H 0.094 0.906 11 C -0.019 4.019 12 N -0.288 5.288 13 C -0.011 4.011 14 C -0.267 4.267 15 C -0.096 4.096 16 O 0.037 5.963 17 N -0.131 5.131 18 C 0.386 3.614 19 O -0.452 6.452 20 O -0.263 6.263 21 H 0.074 0.926 22 H 0.130 0.870 23 H 0.143 0.857 24 H 0.228 0.772 25 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 10.830 -10.493 3.113 15.398 hybrid contribution -0.058 -1.410 0.539 1.511 sum 10.773 -11.903 3.652 16.465 Atomic orbital electron populations 1.70867 1.08331 1.30969 1.43536 1.27600 0.96291 1.07323 0.90547 0.82909 0.74183 0.70433 0.78468 1.21200 1.17378 1.20212 1.22516 0.95330 0.91002 1.57731 0.90022 1.22058 0.90036 0.95834 0.81362 0.90643 1.23199 1.02179 0.92216 0.84311 1.44580 1.35694 1.24249 1.24323 1.20696 0.97618 0.90088 0.92671 1.22858 1.01505 0.96712 1.05614 1.27010 0.96996 1.01272 0.84318 1.84860 1.40377 1.32883 1.38217 1.74389 1.17561 1.01446 1.19746 1.19076 0.79215 0.79512 0.83642 1.90917 1.63174 1.69559 1.21554 1.87648 1.59665 1.39809 1.39202 0.92581 0.87017 0.85706 0.77214 0.70141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.37 13.60 21.45 0.29 -53.08 15 2 C -0.01 -0.73 5.44 84.65 0.46 -0.27 15 3 Si 1.12 46.20 29.90 68.60 2.05 48.25 15 4 H -0.29 -12.14 7.11 99.48 0.71 -11.43 15 5 H -0.25 -8.95 7.11 99.48 0.71 -8.24 15 6 H -0.28 -11.00 7.11 99.48 0.71 -10.29 15 7 C -0.63 -31.95 8.82 25.60 0.23 -31.72 15 8 H 0.08 3.84 7.38 -2.91 -0.02 3.82 15 9 C 0.16 7.44 3.16 30.22 0.10 7.53 15 10 H 0.08 3.49 7.94 -2.39 -0.02 3.48 15 11 C 0.10 3.55 6.98 86.63 0.60 4.16 15 12 N -0.54 -22.61 3.15 -767.04 -2.42 -25.03 15 13 C 0.24 8.41 7.83 134.11 1.05 9.46 15 14 C -0.24 -5.11 10.81 22.52 0.24 -4.86 15 15 C -0.01 -0.23 12.28 67.13 0.82 0.59 15 16 O 0.10 2.74 11.19 71.22 0.80 3.54 15 17 N -0.42 -16.27 11.19 -56.32 -0.63 -16.90 15 18 C 0.63 33.17 8.81 129.91 1.14 34.31 15 19 O -0.56 -33.28 16.97 19.67 0.33 -32.94 15 20 O -0.35 -19.57 9.98 -47.27 -0.47 -20.04 15 21 H 0.26 16.02 6.69 -92.70 -0.62 15.40 15 22 H 0.11 3.51 7.45 -2.39 -0.02 3.49 15 23 H 0.13 3.23 8.14 -2.39 -0.02 3.21 15 24 H 0.21 2.70 8.06 -2.92 -0.02 2.68 15 25 H 0.28 0.33 8.06 -2.91 -0.02 0.31 15 Total: -1.00 -80.57 235.15 5.98 -74.59 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: 1.38 Total: 2.41 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 4.65 Total: 19.20 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -2.75 Total: -95.01 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: 0.66 Total: -49.44 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.05 Total: 48.25 kcal Total: -80.57 5.98 -74.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259721402.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.793 kcal (2) G-P(sol) polarization free energy of solvation -80.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds