Wall clock time and date at job start Mon Mar 30 2020 02:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.25700 * 301.94655 * 9 7 2 11 11 C 1.54132 * 109.27092 * 61.45335 * 9 7 2 12 12 S 1.83297 * 101.08466 * 92.13591 * 11 9 7 13 13 C 1.77447 * 96.59517 * 24.87820 * 12 11 9 14 14 C 1.38796 * 130.53174 * 164.52704 * 13 12 11 15 15 C 1.38046 * 120.19673 * 180.24933 * 14 13 12 16 16 C 1.38502 * 119.26246 * 0.02691 * 15 14 13 17 17 F 1.35100 * 119.75032 * 179.87508 * 16 15 14 18 18 C 1.37868 * 120.48908 * 359.89851 * 16 15 14 19 19 C 1.38856 * 108.27845 * 344.57042 * 13 12 11 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 1.09003 * 111.09914 * 210.09173 * 11 9 7 22 22 H 1.09001 * 111.10026 * 334.13920 * 11 9 7 23 23 H 1.07996 * 119.90499 * 0.27941 * 14 13 12 24 24 H 1.07992 * 120.36530 * 180.02562 * 15 14 13 25 25 H 1.08003 * 119.48242 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5999 -2.5384 0.8729 11 6 0.3939 -2.5918 -1.2783 12 16 1.5426 -3.4624 -2.4107 13 6 2.5032 -4.2622 -1.1513 14 6 3.3948 -5.3227 -1.2340 15 6 4.0314 -5.7847 -0.0995 16 6 3.7694 -5.1788 1.1181 17 9 4.3850 -5.6247 2.2350 18 6 2.8847 -4.1245 1.1988 19 6 2.2341 -3.6419 0.0615 20 1 -0.4850 0.8401 0.0004 21 1 -0.5071 -3.1802 -1.1047 22 1 0.1452 -1.6002 -1.6567 23 1 3.5915 -5.7876 -2.1887 24 1 4.7259 -6.6094 -0.1608 25 1 2.6921 -3.6644 2.1567 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259776655.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:56 Heat of formation + Delta-G solvation = -27.445079 kcal Electronic energy + Delta-G solvation = -12789.591533 eV Core-core repulsion = 10387.195985 eV Total energy + Delta-G solvation = -2402.395548 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.037 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.48794 -38.64880 -34.72389 -31.79317 -30.11229 -28.49007 -25.52876 -22.91872 -22.37928 -20.23023 -17.18406 -16.67092 -16.19251 -15.85158 -15.17145 -14.80849 -14.16318 -13.53702 -13.31113 -13.05395 -12.50301 -12.04051 -11.88188 -11.43556 -11.12476 -11.04243 -10.86223 -10.57360 -9.86550 -9.61426 -9.39248 -8.94206 -8.54443 -8.32275 -6.64635 -6.23067 -4.33157 1.55928 1.70037 2.46032 3.18695 3.24155 3.27486 3.31453 3.99130 4.30303 4.66533 5.03361 5.17280 5.29591 5.66602 5.78668 6.20177 6.23047 6.27227 6.36009 6.53679 6.60568 6.82830 7.11551 7.24594 7.39905 7.69603 7.99640 8.68942 9.32918 10.81058 Molecular weight = 224.04amu Principal moments of inertia in cm(-1) A = 0.029412 B = 0.010285 C = 0.008513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.759342 B = 2721.742767 C = 3288.414935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.068 3.932 10 H 0.058 0.942 11 C -0.043 4.043 12 S -0.190 6.190 13 C -0.092 4.092 14 C -0.070 4.070 15 C -0.159 4.159 16 C 0.086 3.914 17 F -0.149 7.149 18 C -0.137 4.137 19 C -0.025 4.025 20 H 0.267 0.733 21 H 0.065 0.935 22 H 0.129 0.871 23 H 0.127 0.873 24 H 0.133 0.867 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 -7.342 -0.819 8.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.728 3.272 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.048 3.952 10 H 0.076 0.924 11 C -0.191 4.191 12 S 0.053 5.947 13 C -0.204 4.204 14 C -0.095 4.095 15 C -0.180 4.180 16 C 0.064 3.936 17 F -0.127 7.127 18 C -0.157 4.157 19 C -0.030 4.030 20 H 0.077 0.923 21 H 0.084 0.916 22 H 0.147 0.853 23 H 0.145 0.855 24 H 0.150 0.850 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.088 -7.146 -2.136 8.072 hybrid contribution 0.562 0.849 1.545 1.850 sum 3.650 -6.297 -0.591 7.302 Atomic orbital electron populations 1.69887 1.05936 1.27501 1.49427 1.24961 0.94997 0.99394 0.94430 0.86486 0.79573 0.82131 0.79011 1.21054 1.20019 1.19870 1.20847 0.93168 0.88437 1.51754 0.91968 1.18320 0.91394 0.90780 0.94664 0.92384 1.24593 0.95894 1.02585 0.96075 1.85455 1.37761 1.56904 1.14597 1.22187 1.02193 0.99122 0.96929 1.20112 0.96197 0.95156 0.98024 1.20808 1.03436 1.02529 0.91208 1.17378 0.96721 0.97056 0.82439 1.91442 1.81507 1.88708 1.51078 1.20753 0.98248 0.96813 0.99934 1.21442 0.96392 0.93970 0.91229 0.92326 0.91590 0.85317 0.85487 0.84951 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.53 11.77 55.43 0.65 -22.88 15 2 C 0.06 1.68 5.07 -17.82 -0.09 1.59 15 3 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 15 4 H -0.29 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 7 C -0.50 -13.10 8.47 -34.44 -0.29 -13.39 15 8 H 0.06 1.66 7.73 -52.49 -0.41 1.25 15 9 C 0.07 1.61 2.47 -92.25 -0.23 1.38 15 10 H 0.06 1.45 8.14 -51.93 -0.42 1.03 15 11 C -0.04 -0.97 6.64 37.75 0.25 -0.72 15 12 S -0.19 -3.92 23.06 -107.50 -2.48 -6.40 15 13 C -0.09 -1.84 6.48 -39.15 -0.25 -2.10 15 14 C -0.07 -1.19 10.05 -39.45 -0.40 -1.59 15 15 C -0.16 -2.53 10.06 -39.55 -0.40 -2.93 15 16 C 0.09 1.51 7.26 -39.62 -0.29 1.23 15 17 F -0.15 -2.53 17.25 2.25 0.04 -2.49 15 18 C -0.14 -2.67 9.94 -39.20 -0.39 -3.06 15 19 C -0.03 -0.54 5.16 -103.79 -0.54 -1.08 15 20 H 0.27 6.77 8.31 -40.82 -0.34 6.43 15 21 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 22 H 0.13 3.15 6.33 -51.93 -0.33 2.82 15 23 H 0.13 1.81 8.06 -52.49 -0.42 1.39 15 24 H 0.13 1.68 8.06 -52.49 -0.42 1.25 15 25 H 0.13 2.46 8.06 -52.48 -0.42 2.04 15 LS Contribution 237.36 15.07 3.58 3.58 Total: -1.00 -26.07 237.36 -7.84 -33.90 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -1.98 Total: -0.49 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -2.62 Total: -20.67 kcal Atomic # 7 Polarization: -23.53 SS G_CDS: 0.65 Total: -22.88 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: -3.92 SS G_CDS: -2.48 Total: -6.40 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -26.07 -7.84 -33.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776655.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.458 kcal (2) G-P(sol) polarization free energy of solvation -26.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds