Wall clock time and date at job start Mon Mar 30 2020 02:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.25700 * 301.94655 * 9 7 2 11 11 C 1.54132 * 109.27092 * 61.45335 * 9 7 2 12 12 S 1.83297 * 101.08466 * 92.13591 * 11 9 7 13 13 C 1.77447 * 96.59517 * 24.87820 * 12 11 9 14 14 C 1.38796 * 130.53174 * 164.52704 * 13 12 11 15 15 C 1.38046 * 120.19673 * 180.24933 * 14 13 12 16 16 C 1.38502 * 119.26246 * 0.02691 * 15 14 13 17 17 F 1.35100 * 119.75032 * 179.87508 * 16 15 14 18 18 C 1.37868 * 120.48908 * 359.89851 * 16 15 14 19 19 C 1.38856 * 108.27845 * 344.57042 * 13 12 11 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 1.09003 * 111.09914 * 210.09173 * 11 9 7 22 22 H 1.09001 * 111.10026 * 334.13920 * 11 9 7 23 23 H 1.07996 * 119.90499 * 0.27941 * 14 13 12 24 24 H 1.07992 * 120.36530 * 180.02562 * 15 14 13 25 25 H 1.08003 * 119.48242 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5999 -2.5384 0.8729 11 6 0.3939 -2.5918 -1.2783 12 16 1.5426 -3.4624 -2.4107 13 6 2.5032 -4.2622 -1.1513 14 6 3.3948 -5.3227 -1.2340 15 6 4.0314 -5.7847 -0.0995 16 6 3.7694 -5.1788 1.1181 17 9 4.3850 -5.6247 2.2350 18 6 2.8847 -4.1245 1.1988 19 6 2.2341 -3.6419 0.0615 20 1 -0.4850 0.8401 0.0004 21 1 -0.5071 -3.1802 -1.1047 22 1 0.1452 -1.6002 -1.6567 23 1 3.5915 -5.7876 -2.1887 24 1 4.7259 -6.6094 -0.1608 25 1 2.6921 -3.6644 2.1567 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259776655.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:55 Heat of formation + Delta-G solvation = -39.829358 kcal Electronic energy + Delta-G solvation = -12790.128556 eV Core-core repulsion = 10387.195985 eV Total energy + Delta-G solvation = -2402.932571 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.037 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.86796 -40.15416 -36.48349 -33.62268 -31.56920 -30.09802 -27.46524 -24.56007 -23.84230 -21.87479 -18.71773 -18.52305 -17.75559 -17.32078 -16.65449 -16.55020 -15.68726 -15.31691 -14.73684 -14.58751 -14.12493 -13.80984 -13.47977 -13.03354 -12.89810 -12.81720 -12.56798 -12.28599 -11.58323 -11.51116 -11.11525 -10.63408 -10.30291 -9.83447 -8.35227 -8.10879 -6.37569 0.09074 0.26483 0.86447 1.40686 1.42010 1.49564 1.50405 2.35674 2.57790 3.04177 3.24882 3.74634 3.95209 4.20775 4.32873 4.46285 4.53700 4.74922 4.92245 5.08245 5.13068 5.17088 5.34015 5.55193 5.67215 5.88722 6.07206 6.66248 7.30920 8.82024 Molecular weight = 224.04amu Principal moments of inertia in cm(-1) A = 0.029412 B = 0.010285 C = 0.008513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.759342 B = 2721.742767 C = 3288.414935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.049 0.951 9 C 0.067 3.933 10 H 0.030 0.970 11 C -0.044 4.044 12 S -0.179 6.179 13 C -0.107 4.107 14 C -0.061 4.061 15 C -0.137 4.137 16 C 0.088 3.912 17 F -0.143 7.143 18 C -0.150 4.150 19 C -0.055 4.055 20 H 0.268 0.732 21 H 0.075 0.925 22 H 0.104 0.896 23 H 0.162 0.838 24 H 0.177 0.823 25 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.929 -8.709 -1.368 10.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.067 0.933 9 C 0.048 3.952 10 H 0.048 0.952 11 C -0.192 4.192 12 S 0.064 5.936 13 C -0.220 4.220 14 C -0.085 4.085 15 C -0.157 4.157 16 C 0.066 3.934 17 F -0.122 7.122 18 C -0.171 4.171 19 C -0.060 4.060 20 H 0.078 0.922 21 H 0.093 0.907 22 H 0.122 0.878 23 H 0.180 0.820 24 H 0.195 0.805 25 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.744 -8.523 -2.676 10.115 hybrid contribution 0.107 1.176 1.758 2.117 sum 4.851 -7.347 -0.918 8.852 Atomic orbital electron populations 1.69978 1.06903 1.28125 1.49870 1.25621 0.95731 1.02089 0.94153 0.85638 0.78539 0.78918 0.78857 1.20349 1.19782 1.19769 1.21011 0.92664 0.89974 1.51986 0.93289 1.18191 0.91591 0.91316 0.94097 0.95170 1.24316 0.96742 1.01920 0.96215 1.85244 1.37526 1.56841 1.14024 1.22380 1.03436 1.00444 0.95749 1.20549 0.94361 0.93571 0.99981 1.21268 1.02493 1.02370 0.89539 1.17458 0.96063 0.96450 0.83436 1.91462 1.81212 1.88466 1.51025 1.20796 0.99067 0.97888 0.99325 1.21205 0.97526 0.94505 0.92782 0.92247 0.90650 0.87756 0.82007 0.80516 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.35 11.77 21.45 0.25 -49.10 15 2 C 0.02 1.29 5.07 84.66 0.43 1.72 15 3 Si 0.96 42.31 29.54 68.60 2.03 44.33 15 4 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 15 7 C -0.52 -27.66 8.47 25.60 0.22 -27.44 15 8 H 0.05 2.68 7.73 -2.91 -0.02 2.65 15 9 C 0.07 3.31 2.47 -11.85 -0.03 3.28 15 10 H 0.03 1.60 8.14 -2.38 -0.02 1.58 15 11 C -0.04 -2.00 6.64 72.37 0.48 -1.52 15 12 S -0.18 -7.27 23.06 -56.49 -1.30 -8.57 15 13 C -0.11 -4.16 6.48 22.55 0.15 -4.01 15 14 C -0.06 -1.82 10.05 22.36 0.22 -1.59 15 15 C -0.14 -3.71 10.06 22.29 0.22 -3.49 15 16 C 0.09 2.86 7.26 22.24 0.16 3.02 15 17 F -0.14 -4.46 17.25 44.97 0.78 -3.69 15 18 C -0.15 -5.81 9.94 22.52 0.22 -5.59 15 19 C -0.06 -2.37 5.16 -19.33 -0.10 -2.47 15 20 H 0.27 13.85 8.31 -92.70 -0.77 13.08 15 21 H 0.07 3.21 8.14 -2.39 -0.02 3.19 15 22 H 0.10 5.29 6.33 -2.39 -0.02 5.28 15 23 H 0.16 3.74 8.06 -2.91 -0.02 3.72 15 24 H 0.18 3.31 8.06 -2.91 -0.02 3.29 15 25 H 0.13 4.85 8.06 -2.91 -0.02 4.83 15 Total: -1.00 -56.09 237.36 4.93 -51.15 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 1.20 Total: 3.96 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 1.98 Total: -38.10 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.25 Total: -49.10 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.78 Total: -3.69 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: -7.27 SS G_CDS: -1.30 Total: -8.57 kcal Total: -56.09 4.93 -51.15 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776655.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.325 kcal (2) G-P(sol) polarization free energy of solvation -56.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds