Wall clock time and date at job start Mon Mar 30 2020 02:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.26052 * 58.05203 * 9 7 2 11 11 C 1.54135 * 109.27071 * 298.54870 * 9 7 2 12 12 S 1.83296 * 101.08850 * 211.53356 * 11 9 7 13 13 C 1.77435 * 96.60087 * 24.88921 * 12 11 9 14 14 C 1.38790 * 130.55602 * 164.52703 * 13 12 11 15 15 C 1.38245 * 120.14245 * 180.21590 * 14 13 12 16 16 F 1.35098 * 120.37662 * 180.02562 * 15 14 13 17 17 C 1.38550 * 119.24228 * 0.08998 * 15 14 13 18 18 C 1.37658 * 120.51228 * 359.80801 * 17 15 14 19 19 C 1.38909 * 108.27516 * 344.57062 * 13 12 11 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 1.09002 * 111.09467 * 329.48122 * 11 9 7 22 22 H 1.08996 * 111.10160 * 93.53159 * 11 9 7 23 23 H 1.07995 * 119.92475 * 0.25737 * 14 13 12 24 24 H 1.07995 * 119.74464 * 179.83336 * 17 15 14 25 25 H 1.07999 * 119.45181 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5992 -2.5381 -0.8734 11 6 0.3948 -2.5923 1.2779 12 16 0.4005 -4.4010 1.5749 13 6 1.9182 -4.7431 0.7218 14 6 2.7358 -5.8643 0.7491 15 6 3.8904 -5.9002 -0.0105 16 9 4.6894 -6.9893 0.0122 17 6 4.2192 -4.8060 -0.7941 18 6 3.4057 -3.6959 -0.8212 19 6 2.2341 -3.6419 -0.0638 20 1 -0.4850 0.8401 0.0004 21 1 0.8639 -2.0577 2.1039 22 1 -0.6164 -2.2263 1.1005 23 1 2.4692 -6.7107 1.3646 24 1 5.1207 -4.8242 -1.3886 25 1 3.6783 -2.8526 -1.4385 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259783568.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:19 Heat of formation + Delta-G solvation = -41.378316 kcal Electronic energy + Delta-G solvation = -12723.433033 eV Core-core repulsion = 10320.433294 eV Total energy + Delta-G solvation = -2402.999739 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.037 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.87902 -40.17138 -36.34841 -33.54785 -32.01372 -29.78836 -27.54634 -24.33939 -23.99702 -21.82994 -19.13504 -18.53241 -17.42352 -16.92538 -16.60170 -16.48221 -16.09405 -15.47625 -14.71119 -14.56386 -14.01048 -13.83666 -13.38359 -13.04983 -12.99791 -12.79396 -12.60279 -12.21757 -11.66927 -11.47714 -11.00979 -10.68839 -10.46728 -9.60633 -8.39789 -8.20793 -6.33581 0.09230 0.21965 0.73668 1.37900 1.46596 1.48293 1.53884 2.39282 2.56234 3.11366 3.29318 3.78827 3.96307 4.09001 4.26670 4.46639 4.58133 4.67768 4.99781 5.03809 5.16969 5.26035 5.38583 5.54111 5.72482 5.88389 6.12093 6.71917 7.35458 8.86661 Molecular weight = 224.04amu Principal moments of inertia in cm(-1) A = 0.034265 B = 0.009387 C = 0.007624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.952732 B = 2982.135034 C = 3671.591149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.023 3.977 3 Si 0.959 3.041 4 H -0.286 1.286 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.528 4.528 8 H 0.066 0.934 9 C 0.070 3.930 10 H 0.032 0.968 11 C -0.024 4.024 12 S -0.199 6.199 13 C -0.077 4.077 14 C -0.128 4.128 15 C 0.094 3.906 16 F -0.136 7.136 17 C -0.144 4.144 18 C -0.071 4.071 19 C -0.090 4.090 20 H 0.267 0.733 21 H 0.073 0.927 22 H 0.098 0.902 23 H 0.149 0.851 24 H 0.165 0.835 25 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.664 -6.864 -0.153 8.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.178 4.178 3 Si 0.784 3.216 4 H -0.211 1.211 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.084 0.916 9 C 0.050 3.950 10 H 0.050 0.950 11 C -0.172 4.172 12 S 0.044 5.956 13 C -0.189 4.189 14 C -0.152 4.152 15 C 0.073 3.927 16 F -0.115 7.115 17 C -0.164 4.164 18 C -0.091 4.091 19 C -0.095 4.095 20 H 0.076 0.924 21 H 0.092 0.908 22 H 0.116 0.884 23 H 0.167 0.833 24 H 0.183 0.817 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.570 -7.487 0.543 8.788 hybrid contribution 0.930 1.562 -0.556 1.901 sum 5.500 -5.925 -0.014 8.084 Atomic orbital electron populations 1.70003 1.07203 1.28074 1.49891 1.25717 0.95660 1.02422 0.94031 0.85578 0.78351 0.78632 0.78995 1.21119 1.19744 1.19300 1.21265 0.93289 0.89846 1.52278 0.91604 1.18145 0.91563 0.91976 0.93294 0.94980 1.24400 1.04303 0.87267 1.01223 1.85436 1.25361 1.14351 1.70467 1.21950 0.98173 0.97330 1.01484 1.20334 0.93901 0.98522 1.02466 1.17290 0.90384 0.84863 1.00156 1.91478 1.72220 1.52246 1.95515 1.21155 1.02246 0.91977 1.01039 1.20900 0.92042 0.98073 0.98096 1.21562 0.97163 0.94591 0.96160 0.92423 0.90804 0.88404 0.83338 0.81710 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.73 12.15 21.45 0.26 -48.47 15 2 C 0.02 1.15 5.31 84.66 0.45 1.60 15 3 Si 0.96 40.44 29.54 68.60 2.03 42.47 15 4 H -0.29 -11.96 7.11 99.48 0.71 -11.26 15 5 H -0.27 -11.29 7.11 99.48 0.71 -10.59 15 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 7 C -0.53 -26.63 8.02 25.60 0.21 -26.43 15 8 H 0.07 3.23 7.08 -2.91 -0.02 3.21 15 9 C 0.07 3.33 2.49 -11.85 -0.03 3.30 15 10 H 0.03 1.71 8.14 -2.39 -0.02 1.69 15 11 C -0.02 -1.09 6.10 72.37 0.44 -0.65 15 12 S -0.20 -7.96 23.08 -56.49 -1.30 -9.27 15 13 C -0.08 -3.00 6.48 22.56 0.15 -2.85 15 14 C -0.13 -4.23 10.04 22.40 0.22 -4.01 15 15 C 0.09 2.88 7.32 22.35 0.16 3.04 15 16 F -0.14 -3.86 17.28 44.97 0.78 -3.08 15 17 C -0.14 -4.25 9.98 22.21 0.22 -4.03 15 18 C -0.07 -2.54 9.18 22.47 0.21 -2.33 15 19 C -0.09 -3.75 5.55 -19.31 -0.11 -3.86 15 20 H 0.27 13.62 8.31 -92.70 -0.77 12.84 15 21 H 0.07 3.49 7.92 -2.39 -0.02 3.47 15 22 H 0.10 4.69 7.69 -2.39 -0.02 4.68 15 23 H 0.15 4.27 8.06 -2.91 -0.02 4.25 15 24 H 0.17 3.70 8.06 -2.91 -0.02 3.68 15 25 H 0.14 4.79 7.66 -2.91 -0.02 4.77 15 Total: -1.00 -52.94 236.74 4.89 -48.06 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 1.20 Total: 6.51 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 1.92 Total: -36.22 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.26 Total: -48.47 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.78 Total: -3.08 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.30 Total: -9.27 kcal Total: -52.94 4.89 -48.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259783568.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.681 kcal (2) G-P(sol) polarization free energy of solvation -52.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds