Wall clock time and date at job start Mon Mar 30 2020 02:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00326 * 2 1 4 4 H 1.48500 * 109.46862 * 239.99645 * 3 2 1 5 5 H 1.48497 * 109.46677 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47513 * 119.99705 * 3 2 1 7 7 C 1.37878 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00195 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00272 * 0.02562 * 7 2 1 10 10 H 1.09008 * 110.80914 * 298.13610 * 9 7 2 11 11 C 1.54705 * 110.75294 * 174.82006 * 9 7 2 12 12 C 1.51649 * 101.92906 * 216.39424 * 11 9 7 13 13 C 1.37756 * 132.15445 * 195.86200 * 12 11 9 14 14 C 1.38329 * 119.99250 * 178.99474 * 13 12 11 15 15 C 1.38410 * 119.75541 * 359.97438 * 14 13 12 16 16 Cl 1.73595 * 119.83888 * 180.20149 * 15 14 13 17 17 C 1.38047 * 120.31984 * 0.22808 * 15 14 13 18 18 C 1.38887 * 107.03892 * 15.35209 * 12 11 9 19 19 O 1.36135 * 111.23406 * 1.12107 * 18 12 11 20 20 H 0.97002 * 119.99745 * 0.02562 * 1 2 3 21 21 H 1.08998 * 110.93964 * 98.22917 * 11 9 7 22 22 H 1.09002 * 110.96288 * 334.56147 * 11 9 7 23 23 H 1.07998 * 120.00428 * 358.99146 * 13 12 11 24 24 H 1.08000 * 120.12265 * 180.02562 * 14 13 12 25 25 H 1.07995 * 119.88128 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7463 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6408 -2.5941 0.8989 11 6 2.2246 -3.6944 -0.1294 12 6 1.4300 -4.6534 -0.9945 13 6 1.5756 -5.9975 -1.2589 14 6 0.6750 -6.6406 -2.0889 15 6 -0.3707 -5.9288 -2.6505 16 17 -1.5052 -6.7348 -3.6882 17 6 -0.5156 -4.5809 -2.3899 18 6 0.3905 -3.9260 -1.5596 19 8 0.4402 -2.6193 -1.1808 20 1 -0.4850 0.8401 -0.0004 21 1 2.4355 -4.1328 0.8459 22 1 3.1468 -3.3938 -0.6269 23 1 2.3929 -6.5491 -0.8182 24 1 0.7870 -7.6944 -2.2972 25 1 -1.3344 -4.0325 -2.8316 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260046676.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:54 Heat of formation + Delta-G solvation = -21.958674 kcal Electronic energy + Delta-G solvation = -12732.321758 eV Core-core repulsion = 10315.747622 eV Total energy + Delta-G solvation = -2416.574136 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.034 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.11877 -37.13693 -35.77696 -32.91516 -31.69163 -29.47684 -28.64679 -25.17384 -22.12026 -21.28327 -20.88859 -17.01647 -16.72103 -15.82749 -15.36384 -14.63630 -14.24507 -13.62180 -13.21602 -12.92935 -12.68187 -12.14280 -11.79294 -11.50748 -11.12640 -11.02628 -10.87178 -10.70852 -10.43527 -10.37629 -9.56396 -9.34640 -8.75308 -8.35864 -7.31332 -6.25766 -4.42649 1.57385 1.85067 2.35400 3.21368 3.26801 3.28590 4.05746 4.24526 4.48785 5.11466 5.21871 5.35989 5.52004 5.69437 5.77598 6.11835 6.20016 6.39200 6.47970 6.61745 6.65518 6.97757 7.09579 7.25743 7.65192 7.87793 8.32795 8.71499 9.30794 10.81451 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.054114 B = 0.006842 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.297756 B = 4091.096883 C = 4479.098967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.079 3.921 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.073 0.927 9 C 0.208 3.792 10 H 0.050 0.950 11 C -0.104 4.104 12 C -0.182 4.182 13 C -0.063 4.063 14 C -0.168 4.168 15 C 0.001 3.999 16 Cl -0.084 7.084 17 C -0.161 4.161 18 C 0.146 3.854 19 O -0.275 6.275 20 H 0.268 0.732 21 H 0.073 0.927 22 H 0.083 0.917 23 H 0.124 0.876 24 H 0.127 0.873 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.853 -9.950 -2.726 10.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.129 4.129 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.091 0.909 9 C 0.156 3.844 10 H 0.067 0.933 11 C -0.141 4.141 12 C -0.183 4.183 13 C -0.082 4.082 14 C -0.187 4.187 15 C -0.026 4.026 16 Cl -0.055 7.055 17 C -0.180 4.180 18 C 0.096 3.904 19 O -0.187 6.187 20 H 0.078 0.922 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.142 0.858 24 H 0.145 0.855 25 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.478 -9.675 -2.884 10.107 hybrid contribution 0.341 0.700 -0.111 0.786 sum 0.819 -8.975 -2.995 9.497 Atomic orbital electron populations 1.70010 1.06245 1.27604 1.45408 1.25156 0.94910 0.99887 0.92986 0.86502 0.79638 0.82036 0.78989 1.19789 1.20911 1.19749 1.21007 0.92998 0.89141 1.54462 0.90900 1.21141 0.86531 0.93334 0.83420 0.93286 1.21996 0.99736 0.94407 0.97928 1.21285 0.98563 0.94903 1.03580 1.20139 0.98286 0.92735 0.97024 1.20636 0.96218 0.99885 1.01992 1.20319 0.93160 0.92288 0.96797 1.98328 1.61141 1.79619 1.66440 1.19978 1.01237 0.92228 1.04570 1.19913 0.91322 0.87150 0.92005 1.87443 1.69134 1.17242 1.44910 0.92236 0.90814 0.89913 0.85789 0.85519 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.55 12.95 55.43 0.72 -23.83 15 2 C 0.08 2.13 5.42 -17.82 -0.10 2.03 15 3 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 15 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 15 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 7 C -0.54 -14.45 8.81 -34.44 -0.30 -14.75 15 8 H 0.07 1.85 7.66 -52.49 -0.40 1.45 15 9 C 0.21 5.24 3.45 -26.99 -0.09 5.15 15 10 H 0.05 1.29 8.14 -51.92 -0.42 0.87 15 11 C -0.10 -2.11 6.63 -26.52 -0.18 -2.29 15 12 C -0.18 -3.58 6.27 -104.09 -0.65 -4.24 15 13 C -0.06 -1.03 10.03 -39.72 -0.40 -1.43 15 14 C -0.17 -2.59 9.84 -39.48 -0.39 -2.98 15 15 C 0.00 0.01 6.31 -39.59 -0.25 -0.23 15 16 Cl -0.08 -1.21 28.94 -51.86 -1.50 -2.71 15 17 C -0.16 -3.10 9.84 -39.27 -0.39 -3.49 15 18 C 0.15 3.22 7.03 -38.96 -0.27 2.94 15 19 O -0.28 -7.22 10.35 -20.17 -0.21 -7.43 15 20 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 21 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 22 H 0.08 1.66 7.82 -51.93 -0.41 1.25 15 23 H 0.12 1.63 8.06 -52.49 -0.42 1.20 15 24 H 0.13 1.60 8.06 -52.49 -0.42 1.18 15 25 H 0.13 2.43 8.06 -52.49 -0.42 2.00 15 LS Contribution 240.98 15.07 3.63 3.63 Total: -1.00 -28.32 240.98 -7.46 -35.78 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -2.06 Total: -1.58 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -3.02 Total: -19.28 kcal Atomic # 7 Polarization: -24.55 SS G_CDS: 0.72 Total: -23.83 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.21 Total: -7.43 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.50 Total: -2.71 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.32 -7.46 -35.78 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260046676.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.821 kcal (2) G-P(sol) polarization free energy of solvation -28.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds