Wall clock time and date at job start Mon Mar 30 2020 02:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.08990 * 109.26345 * 59.30080 * 9 7 2 11 11 C 1.54132 * 109.27315 * 299.78984 * 9 7 2 12 12 S 1.83303 * 101.08481 * 211.56574 * 11 9 7 13 13 C 1.77439 * 96.59543 * 24.87287 * 12 11 9 14 14 C 1.38841 * 130.55647 * 164.57560 * 13 12 11 15 15 C 1.38032 * 120.21975 * 180.22682 * 14 13 12 16 16 C 1.38287 * 119.31497 * 359.97438 * 15 14 13 17 17 C 1.37929 * 120.51338 * 359.90346 * 16 15 14 18 18 F 1.35100 * 119.49640 * 179.97438 * 17 16 15 19 19 C 1.38732 * 108.25632 * 344.63544 * 13 12 11 20 20 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 21 21 H 1.09003 * 111.09899 * 329.51491 * 11 9 7 22 22 H 1.08994 * 111.09975 * 93.56519 * 11 9 7 23 23 H 1.08000 * 119.89052 * 0.20470 * 14 13 12 24 24 H 1.07996 * 120.34015 * 179.97438 * 15 14 13 25 25 H 1.08001 * 119.74472 * 179.87404 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 1 0.6165 -2.5434 -0.8976 11 6 0.3700 -2.5845 1.2495 12 16 0.3704 -4.3914 1.5580 13 6 1.9045 -4.7381 0.7365 14 6 2.7218 -5.8594 0.7859 15 6 3.8895 -5.9009 0.0511 16 6 4.2348 -4.8157 -0.7333 17 6 3.4224 -3.7022 -0.7852 18 9 3.7799 -2.6533 -1.5580 19 6 2.2350 -3.6422 -0.0475 20 1 -0.4850 0.8401 0.0040 21 1 0.8225 -2.0444 2.0811 22 1 -0.6376 -2.2201 1.0500 23 1 2.4431 -6.7018 1.4016 24 1 4.5268 -6.7720 0.0884 25 1 5.1480 -4.8399 -1.3095 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260055878.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:09 Heat of formation + Delta-G solvation = -40.571159 kcal Electronic energy + Delta-G solvation = -13034.598849 eV Core-core repulsion = 10631.634111 eV Total energy + Delta-G solvation = -2402.964738 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.037 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.67080 -40.01532 -36.56224 -33.72987 -31.32607 -30.10850 -27.59149 -24.53771 -23.62979 -21.90002 -19.08527 -18.63823 -17.17230 -16.90736 -16.50182 -16.33563 -16.20286 -15.44804 -15.02647 -14.26396 -14.08034 -13.50672 -13.23386 -13.06416 -13.02841 -12.84622 -12.55446 -12.39384 -11.72195 -11.50105 -11.07147 -10.64538 -10.50619 -9.47797 -8.40860 -8.25375 -6.36872 0.15619 0.26505 0.78244 1.33929 1.38229 1.42795 1.47901 2.36083 2.61673 3.05721 3.49583 3.81700 4.02737 4.15239 4.41713 4.43222 4.53064 4.67582 5.02609 5.19334 5.22303 5.30108 5.36697 5.39932 5.67848 5.93927 6.08614 6.66632 7.30954 8.82433 Molecular weight = 224.04amu Principal moments of inertia in cm(-1) A = 0.030283 B = 0.012019 C = 0.009012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.374640 B = 2329.033061 C = 3106.266172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.021 3.979 3 Si 0.958 3.042 4 H -0.278 1.278 5 H -0.269 1.269 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.073 3.927 10 H 0.021 0.979 11 C -0.022 4.022 12 S -0.194 6.194 13 C -0.077 4.077 14 C -0.102 4.102 15 C -0.070 4.070 16 C -0.157 4.157 17 C 0.094 3.906 18 F -0.149 7.149 19 C -0.135 4.135 20 H 0.268 0.732 21 H 0.072 0.928 22 H 0.097 0.903 23 H 0.157 0.843 24 H 0.188 0.812 25 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.360 -10.043 1.166 11.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.179 4.179 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.053 3.947 10 H 0.039 0.961 11 C -0.170 4.170 12 S 0.049 5.951 13 C -0.190 4.190 14 C -0.126 4.126 15 C -0.090 4.090 16 C -0.177 4.177 17 C 0.073 3.927 18 F -0.127 7.127 19 C -0.141 4.141 20 H 0.077 0.923 21 H 0.091 0.909 22 H 0.115 0.885 23 H 0.175 0.825 24 H 0.205 0.795 25 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.230 -10.565 1.813 11.928 hybrid contribution 0.820 2.331 -0.925 2.638 sum 6.050 -8.234 0.889 10.256 Atomic orbital electron populations 1.69994 1.07016 1.28066 1.50146 1.25704 0.95768 1.02391 0.94081 0.85603 0.78495 0.78743 0.78886 1.20251 1.19440 1.19991 1.21216 0.93012 0.90271 1.52009 0.92593 1.18067 0.91297 0.91884 0.93438 0.96096 1.24277 1.03948 0.88061 1.00709 1.85322 1.24507 1.13604 1.71666 1.22196 0.98289 0.97653 1.00826 1.20861 0.94012 0.96375 1.01322 1.21346 0.95625 0.98402 0.93595 1.21315 1.00915 0.92304 1.03209 1.18080 0.94488 0.86113 0.94024 1.91443 1.91448 1.56875 1.72978 1.21506 0.96970 0.96938 0.98661 0.92335 0.90918 0.88460 0.82512 0.79521 0.81937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.62 12.06 21.45 0.26 -51.37 15 2 C 0.02 1.15 5.30 84.66 0.45 1.60 15 3 Si 0.96 43.80 29.54 68.60 2.03 45.82 15 4 H -0.28 -12.22 7.11 99.48 0.71 -11.52 15 5 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 15 7 C -0.53 -29.39 7.54 25.60 0.19 -29.20 15 8 H 0.06 3.17 6.38 -2.91 -0.02 3.15 15 9 C 0.07 3.79 2.50 -11.85 -0.03 3.76 15 10 H 0.02 1.23 8.14 -2.39 -0.02 1.21 15 11 C -0.02 -1.05 6.04 72.37 0.44 -0.62 15 12 S -0.19 -7.85 23.08 -56.49 -1.30 -9.15 15 13 C -0.08 -3.01 6.48 22.53 0.15 -2.86 15 14 C -0.10 -2.93 10.05 22.37 0.22 -2.71 15 15 C -0.07 -1.66 10.08 22.23 0.22 -1.44 15 16 C -0.16 -4.60 9.96 22.21 0.22 -4.37 15 17 C 0.09 3.85 6.98 22.60 0.16 4.01 15 18 F -0.15 -6.79 15.19 44.97 0.68 -6.10 15 19 C -0.13 -6.12 5.55 -19.28 -0.11 -6.23 15 20 H 0.27 14.34 8.31 -92.70 -0.77 13.56 15 21 H 0.07 3.63 7.92 -2.39 -0.02 3.61 15 22 H 0.10 4.91 7.64 -2.39 -0.02 4.89 15 23 H 0.16 3.48 8.06 -2.91 -0.02 3.45 15 24 H 0.19 2.44 8.06 -2.91 -0.02 2.42 15 25 H 0.16 3.65 8.06 -2.91 -0.02 3.63 15 Total: -1.00 -62.27 234.23 4.78 -57.49 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: 1.20 Total: 1.36 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 1.92 Total: -38.04 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.26 Total: -51.37 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 0.68 Total: -6.10 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.30 Total: -9.15 kcal Total: -62.27 4.78 -57.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260055878.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.918 kcal (2) G-P(sol) polarization free energy of solvation -62.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds