Wall clock time and date at job start Mon Mar 30 2020 02:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99760 * 2 1 4 4 H 1.48500 * 109.47382 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47293 * 300.00100 * 3 2 1 6 6 H 1.48505 * 109.47173 * 59.99968 * 3 2 1 7 7 C 1.37872 * 120.00470 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00583 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99525 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46962 * 179.97438 * 9 7 2 11 11 C 1.38249 * 119.92409 * 89.99749 * 10 9 7 12 12 C 1.38570 * 120.07382 * 179.97438 * 11 10 9 13 13 C 1.39204 * 119.84365 * 359.97438 * 12 11 10 14 14 C 1.38698 * 119.82441 * 0.02562 * 13 12 11 15 15 F 1.35100 * 120.00500 * 180.02562 * 14 13 12 16 16 C 1.38228 * 119.91996 * 269.97987 * 10 9 7 17 17 O 1.36564 * 108.64468 * 179.97438 * 13 12 11 18 18 C 1.43988 * 105.46979 * 17.27322 * 17 13 12 19 19 O 1.36505 * 131.50942 * 179.97438 * 12 11 10 20 20 H 0.97005 * 119.99826 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47317 * 60.00204 * 9 7 2 22 22 H 1.08999 * 109.47346 * 299.99562 * 9 7 2 23 23 H 1.08004 * 119.96188 * 359.96089 * 11 10 9 24 24 H 1.08003 * 119.94274 * 0.03743 * 16 10 9 25 25 H 1.09004 * 110.57019 * 214.33308 * 18 17 13 26 26 H 1.09002 * 110.57590 * 91.45191 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3466 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.6787 -4.1687 1.1987 12 6 3.5788 -5.2222 1.2023 13 6 4.0301 -5.7519 -0.0033 14 6 3.5769 -5.2219 -1.2022 15 9 4.0122 -5.7335 -2.3744 16 6 2.6782 -4.1688 -1.1975 17 8 4.9004 -6.7694 0.2654 18 6 4.6635 -7.1243 1.6406 19 8 4.1652 -5.9076 2.2269 20 1 -0.4850 0.8401 0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6242 -2.5567 0.8903 23 1 2.3270 -3.7564 2.1330 24 1 2.3260 -3.7565 -2.1316 25 1 5.5921 -7.4299 2.1228 26 1 3.9168 -7.9155 1.7089 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260109883.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:04 Heat of formation + Delta-G solvation = -107.420777 kcal Electronic energy + Delta-G solvation = -14716.885785 eV Core-core repulsion = 11868.269360 eV Total energy + Delta-G solvation = -2848.616426 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.01015 -43.14839 -39.16940 -37.29755 -35.23113 -32.55916 -31.21437 -28.95491 -26.74955 -25.34427 -24.03211 -22.72650 -19.24650 -18.91775 -18.66216 -18.41886 -17.64994 -16.76655 -16.56382 -16.42514 -16.11779 -15.25078 -14.78614 -14.46972 -14.30359 -14.02702 -13.68846 -13.30778 -13.13876 -12.69276 -12.53890 -12.49388 -11.93714 -11.71734 -11.22101 -10.58744 -9.69329 -9.12354 -8.19214 -6.31387 -0.00609 0.01309 1.42793 1.44989 1.56899 1.65037 2.33716 2.41084 2.50503 2.98606 3.13749 3.61111 3.77629 3.85988 4.13472 4.19679 4.24736 4.37247 4.75876 4.97483 5.06957 5.17536 5.30071 5.41292 5.75337 5.78564 6.02102 6.15860 6.80459 7.37402 8.90139 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.038620 B = 0.007138 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.844548 B = 3921.803736 C = 4207.215209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.058 3.942 10 C -0.008 4.008 11 C -0.114 4.114 12 C 0.064 3.936 13 C -0.037 4.037 14 C 0.117 3.883 15 F -0.136 7.136 16 C -0.148 4.148 17 O -0.318 6.318 18 C 0.203 3.797 19 O -0.315 6.315 20 H 0.266 0.734 21 H 0.022 0.978 22 H 0.021 0.979 23 H 0.144 0.856 24 H 0.154 0.846 25 H 0.169 0.831 26 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.061 -11.884 2.170 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.569 4.569 8 H 0.075 0.925 9 C 0.021 3.979 10 C -0.009 4.009 11 C -0.133 4.133 12 C 0.019 3.981 13 C -0.082 4.082 14 C 0.097 3.903 15 F -0.115 7.115 16 C -0.167 4.167 17 O -0.235 6.235 18 C 0.093 3.907 19 O -0.231 6.231 20 H 0.075 0.925 21 H 0.040 0.960 22 H 0.040 0.960 23 H 0.161 0.839 24 H 0.171 0.829 25 H 0.186 0.814 26 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.133 -11.880 2.234 14.036 hybrid contribution 0.295 0.681 -0.180 0.764 sum 7.429 -11.199 2.055 13.595 Atomic orbital electron populations 1.70058 1.07444 1.27953 1.51045 1.25797 0.95682 1.02739 0.94553 0.85455 0.78959 0.79143 0.77851 1.19137 1.20338 1.20319 1.21373 0.93247 0.90964 1.51288 0.92517 1.18159 0.92464 0.89548 0.97685 1.19997 0.95846 0.94157 0.90888 1.20134 0.97265 0.95970 0.99932 1.19475 0.96762 0.97108 0.84780 1.19575 0.98169 0.96398 0.94088 1.16596 0.98734 0.97003 0.77988 1.91467 1.88394 1.86193 1.45400 1.20931 0.99107 0.96015 1.00623 1.87340 1.55138 1.49682 1.31366 1.26226 1.03266 0.86230 0.74948 1.87335 1.71133 1.33307 1.31356 0.92486 0.95984 0.96029 0.83862 0.82851 0.81366 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.99 13.29 21.45 0.28 -52.71 15 2 C 0.01 0.61 5.46 84.65 0.46 1.07 15 3 Si 0.96 42.73 29.54 68.60 2.03 44.76 15 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 5 H -0.28 -12.06 7.11 99.48 0.71 -11.36 15 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 7 C -0.53 -28.53 9.09 25.60 0.23 -28.30 15 8 H 0.06 3.02 7.74 -2.92 -0.02 3.00 15 9 C 0.06 2.86 5.10 29.10 0.15 3.01 15 10 C -0.01 -0.34 5.07 -19.86 -0.10 -0.44 15 11 C -0.11 -4.27 9.71 22.35 0.22 -4.06 15 12 C 0.06 2.18 7.15 22.58 0.16 2.34 15 13 C -0.04 -1.28 7.13 22.61 0.16 -1.12 15 14 C 0.12 4.17 7.31 22.43 0.16 4.34 15 15 F -0.14 -4.72 17.27 44.97 0.78 -3.95 15 16 C -0.15 -5.56 9.67 22.32 0.22 -5.35 15 17 O -0.32 -9.48 11.41 -76.80 -0.88 -10.36 15 18 C 0.20 4.23 8.89 113.37 1.01 5.24 15 19 O -0.31 -9.18 11.40 -76.10 -0.87 -10.05 15 20 H 0.27 14.33 8.31 -92.70 -0.77 13.56 15 21 H 0.02 1.12 8.08 -2.39 -0.02 1.10 15 22 H 0.02 1.10 8.08 -2.39 -0.02 1.08 15 23 H 0.14 5.15 8.06 -2.91 -0.02 5.12 15 24 H 0.15 5.47 8.06 -2.91 -0.02 5.45 15 25 H 0.17 2.07 8.14 -2.38 -0.02 2.05 15 26 H 0.11 1.68 8.14 -2.39 -0.02 1.66 15 Total: -1.00 -61.33 243.41 5.22 -56.12 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: 1.20 Total: -0.54 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 2.67 Total: -23.27 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.28 Total: -52.71 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -1.74 Total: -20.41 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.78 Total: -3.95 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -61.33 5.22 -56.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260109883.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.304 kcal (2) G-P(sol) polarization free energy of solvation -61.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds