Wall clock time and date at job start Mon Mar 30 2020 02:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99848 * 2 1 4 4 H 1.48509 * 109.47202 * 269.99554 * 3 2 1 5 5 H 1.48500 * 109.47566 * 29.99920 * 3 2 1 6 6 H 1.48501 * 109.47204 * 150.00126 * 3 2 1 7 7 C 1.37876 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00079 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00234 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.96786 * 55.86419 * 9 7 2 11 11 C 1.54152 * 111.10287 * 180.02562 * 9 7 2 12 12 C 1.50875 * 110.47086 * 89.51224 * 11 9 7 13 13 C 1.39616 * 126.80944 * 200.83517 * 12 11 9 14 14 C 1.37876 * 121.03844 * 180.92097 * 13 12 11 15 15 F 1.35104 * 119.75725 * 179.74100 * 14 13 12 16 16 C 1.38493 * 120.48251 * 359.46792 * 14 13 12 17 17 C 1.38044 * 119.27113 * 0.08885 * 16 14 13 18 18 C 1.38795 * 120.19695 * 0.02562 * 17 16 14 19 19 S 1.77442 * 130.53617 * 180.60878 * 18 17 16 20 20 H 0.96999 * 119.99981 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.28198 * 329.23893 * 11 9 7 22 22 H 1.09000 * 109.21990 * 209.74854 * 11 9 7 23 23 H 1.08002 * 119.47813 * 0.65935 * 13 12 11 24 24 H 1.08004 * 120.36525 * 180.10710 * 16 14 13 25 25 H 1.07998 * 119.89811 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.5611 -2.5519 -0.8404 11 6 2.2190 -3.6989 0.0028 12 6 2.5597 -4.1007 1.4166 13 6 3.6702 -4.8379 1.8321 14 6 3.8558 -5.1555 3.1609 15 9 4.9371 -5.8747 3.5337 16 6 2.9450 -4.7380 4.1170 17 6 1.8457 -4.0005 3.7253 18 6 1.6586 -3.6833 2.3871 19 16 0.3740 -2.7535 1.5910 20 1 -0.4850 0.8400 -0.0004 21 1 3.1331 -3.4243 -0.5237 22 1 1.7489 -4.5397 -0.5072 23 1 4.3929 -5.1681 1.1007 24 1 3.0932 -4.9865 5.1575 25 1 1.1293 -3.6694 4.4625 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260412034.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:52 Heat of formation + Delta-G solvation = -45.814069 kcal Electronic energy + Delta-G solvation = -12649.515697 eV Core-core repulsion = 10246.323609 eV Total energy + Delta-G solvation = -2403.192087 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.037 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.82295 -40.03322 -36.14390 -34.18029 -31.55592 -30.45299 -27.25645 -24.24757 -23.71896 -21.91304 -18.94141 -18.52711 -17.73730 -17.22789 -16.54941 -16.53178 -15.63740 -15.35156 -14.61832 -14.55925 -14.20450 -13.83514 -13.42398 -13.25472 -12.74859 -12.57638 -12.52605 -12.02097 -11.88775 -11.69447 -10.83122 -10.53003 -10.21388 -9.83042 -8.42799 -7.90252 -6.39493 0.13923 0.24605 1.14572 1.42252 1.44604 1.53257 2.03821 2.34947 2.56239 3.20525 3.24632 3.71228 3.92977 4.17222 4.23866 4.49680 4.52312 4.73216 4.88114 5.02275 5.10915 5.16708 5.27201 5.42832 5.58110 5.91112 5.92489 6.59184 7.23042 8.75223 Molecular weight = 224.04amu Principal moments of inertia in cm(-1) A = 0.037616 B = 0.008708 C = 0.008217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.188558 B = 3214.744808 C = 3406.571927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.029 3.971 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.512 4.512 8 H 0.069 0.931 9 C 0.106 3.894 10 H 0.061 0.939 11 C -0.076 4.076 12 C -0.083 4.083 13 C -0.134 4.134 14 C 0.073 3.927 15 F -0.143 7.143 16 C -0.129 4.129 17 C -0.084 4.084 18 C -0.086 4.086 19 S -0.266 6.266 20 H 0.270 0.730 21 H 0.092 0.908 22 H 0.091 0.909 23 H 0.149 0.851 24 H 0.169 0.831 25 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.881 -7.262 4.153 10.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.178 4.178 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.554 4.554 8 H 0.087 0.913 9 C -0.018 4.018 10 H 0.079 0.921 11 C -0.114 4.114 12 C -0.090 4.090 13 C -0.155 4.155 14 C 0.051 3.949 15 F -0.121 7.121 16 C -0.150 4.150 17 C -0.108 4.108 18 C -0.200 4.200 19 S -0.017 6.017 20 H 0.079 0.921 21 H 0.111 0.889 22 H 0.109 0.891 23 H 0.167 0.833 24 H 0.187 0.813 25 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.431 -6.765 4.451 9.231 hybrid contribution 1.287 0.502 -0.374 1.431 sum 5.718 -6.263 4.077 9.410 Atomic orbital electron populations 1.70024 1.07655 1.28476 1.45903 1.25834 0.95573 1.03011 0.93360 0.85452 0.78592 0.78366 0.78739 1.19097 1.20841 1.19306 1.21417 0.93383 0.90348 1.50297 0.91336 1.21613 0.94705 0.95641 0.89837 0.92133 1.21031 1.00656 0.97303 0.92417 1.20906 0.94850 0.97818 0.95402 1.20839 0.98400 1.00941 0.95281 1.17349 0.86448 0.97893 0.93251 1.91464 1.52809 1.75809 1.92064 1.21230 0.93579 0.99543 1.00621 1.20479 0.98416 0.98964 0.92961 1.22581 0.99251 1.00959 0.97164 1.86527 1.25747 1.64464 1.24946 0.92101 0.88946 0.89078 0.83345 0.81314 0.83917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.15 12.82 21.45 0.28 -48.88 15 2 C 0.03 1.51 5.38 84.65 0.46 1.96 15 3 Si 0.96 41.48 29.54 68.60 2.03 43.51 15 4 H -0.27 -10.90 7.11 99.48 0.71 -10.20 15 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 15 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 7 C -0.51 -26.61 8.54 25.60 0.22 -26.39 15 8 H 0.07 3.47 7.67 -2.91 -0.02 3.45 15 9 C 0.11 5.12 3.20 30.24 0.10 5.21 15 10 H 0.06 3.13 8.14 -2.39 -0.02 3.11 15 11 C -0.08 -2.96 5.81 30.29 0.18 -2.79 15 12 C -0.08 -3.20 5.98 -19.33 -0.12 -3.32 15 13 C -0.13 -4.33 9.95 22.52 0.22 -4.11 15 14 C 0.07 2.21 7.26 22.24 0.16 2.37 15 15 F -0.14 -4.07 17.26 44.97 0.78 -3.29 15 16 C -0.13 -3.69 10.06 22.28 0.22 -3.46 15 17 C -0.08 -2.83 10.05 22.36 0.22 -2.60 15 18 C -0.09 -3.53 6.48 22.55 0.15 -3.38 15 19 S -0.27 -12.93 21.97 -56.49 -1.24 -14.18 15 20 H 0.27 14.21 8.31 -92.71 -0.77 13.44 15 21 H 0.09 3.37 7.82 -2.39 -0.02 3.35 15 22 H 0.09 3.16 8.14 -2.39 -0.02 3.14 15 23 H 0.15 4.03 8.06 -2.91 -0.02 4.01 15 24 H 0.17 3.54 8.06 -2.91 -0.02 3.52 15 25 H 0.14 4.31 8.06 -2.91 -0.02 4.29 15 Total: -1.00 -58.15 239.86 4.85 -53.30 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.20 Total: 6.04 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 1.81 Total: -36.50 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.28 Total: -48.88 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.78 Total: -3.29 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: -12.93 SS G_CDS: -1.24 Total: -14.18 kcal Total: -58.15 4.85 -53.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412034.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.488 kcal (2) G-P(sol) polarization free energy of solvation -58.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds