Wall clock time and date at job start Mon Mar 30 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86801 * 120.00508 * 2 1 4 4 H 1.48493 * 109.47181 * 239.99850 * 3 2 1 5 5 H 1.48500 * 109.46572 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46819 * 119.99594 * 3 2 1 7 7 C 1.39951 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99763 * 163.71642 * 7 2 1 9 9 C 1.41390 * 120.00128 * 343.70701 * 7 2 1 10 10 C 1.41125 * 121.03015 * 335.51046 * 9 7 2 11 11 N 1.31903 * 118.79130 * 179.72789 * 10 9 7 12 12 C 1.32161 * 121.07405 * 0.50670 * 11 10 9 13 13 Cl 1.73600 * 118.83819 * 179.75560 * 12 11 10 14 14 N 1.32129 * 122.32542 * 359.47789 * 12 11 10 15 15 C 1.31934 * 121.07320 * 0.25156 * 14 12 11 16 16 C 1.50705 * 120.60123 * 179.97438 * 15 14 12 17 17 C 1.52994 * 117.49921 * 8.62929 * 16 15 14 18 18 C 1.52990 * 60.00196 * 252.50518 * 17 16 15 19 19 H 0.96993 * 119.99285 * 0.02562 * 1 2 3 20 20 H 1.08000 * 120.60433 * 359.95634 * 10 9 7 21 21 H 1.08999 * 115.54891 * 154.33464 * 16 15 14 22 22 H 1.09003 * 117.50167 * 359.97438 * 17 16 15 23 23 H 1.09005 * 117.50171 * 145.01320 * 17 16 15 24 24 H 1.08996 * 117.50465 * 252.50939 * 18 17 16 25 25 H 1.09006 * 117.52116 * 107.47798 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0962 1.6962 -1.2124 5 1 1.2775 2.7464 0.0006 6 1 3.0962 1.6962 1.2126 7 6 2.0080 -1.2121 -0.0005 8 1 3.0555 -1.2307 -0.2628 9 6 1.3436 -2.4121 0.3424 10 6 0.1896 -2.3981 1.1547 11 7 -0.3983 -3.5432 1.4429 12 6 0.0823 -4.6890 0.9926 13 17 -0.7342 -6.1623 1.4127 14 7 1.1590 -4.7524 0.2294 15 6 1.8133 -3.6604 -0.1171 16 6 3.0407 -3.7452 -0.9875 17 6 3.3726 -5.1026 -1.6104 18 6 4.2248 -4.5591 -0.4620 19 1 -0.4849 0.8400 -0.0004 20 1 -0.2070 -1.4665 1.5305 21 1 3.2634 -2.8539 -1.5741 22 1 2.7036 -5.9345 -1.3904 23 1 3.8137 -5.1046 -2.6073 24 1 5.2265 -4.2035 -0.7030 25 1 4.1163 -5.0329 0.5137 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260684596.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:34 Heat of formation + Delta-G solvation = 27.803273 kcal Electronic energy + Delta-G solvation = -12831.531681 eV Core-core repulsion = 10449.408137 eV Total energy + Delta-G solvation = -2382.123545 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18533 -37.91719 -37.29759 -36.14940 -33.69869 -32.35842 -27.80538 -25.79107 -23.97703 -23.06404 -21.74853 -19.49410 -18.45952 -17.60864 -16.87108 -16.07679 -15.54455 -15.27586 -14.92602 -14.19551 -13.73344 -13.32010 -12.94650 -12.73554 -12.50207 -12.29679 -12.15174 -12.11733 -11.89419 -11.49954 -11.24322 -11.10687 -10.69953 -9.91805 -9.61541 -8.89693 -6.59186 0.47317 0.68211 1.03590 1.42953 1.54079 1.58066 2.15169 2.56793 3.06732 3.55867 3.67564 3.93368 4.14450 4.34993 4.47056 4.61805 4.84930 4.86434 5.00602 5.06260 5.33657 5.43718 5.52679 5.58182 6.15824 6.22981 6.50639 6.79174 7.60905 8.06136 Molecular weight = 224.04amu Principal moments of inertia in cm(-1) A = 0.026724 B = 0.010442 C = 0.007771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.504001 B = 2680.960856 C = 3602.230837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.034 3.966 3 Si 0.998 3.002 4 H -0.250 1.250 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.424 4.424 8 H 0.109 0.891 9 C -0.002 4.002 10 C 0.056 3.944 11 N -0.506 5.506 12 C 0.177 3.823 13 Cl -0.027 7.027 14 N -0.484 5.484 15 C 0.071 3.929 16 C -0.100 4.100 17 C -0.158 4.158 18 C -0.153 4.153 19 H 0.302 0.698 20 H 0.160 0.840 21 H 0.126 0.874 22 H 0.082 0.918 23 H 0.118 0.882 24 H 0.124 0.876 25 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.283 0.711 -2.003 6.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.452 4.452 8 H 0.127 0.873 9 C -0.009 4.009 10 C -0.115 4.115 11 N -0.222 5.222 12 C -0.109 4.109 13 Cl 0.000 7.000 14 N -0.199 5.199 15 C -0.080 4.080 16 C -0.119 4.119 17 C -0.195 4.195 18 C -0.191 4.191 19 H 0.114 0.886 20 H 0.177 0.823 21 H 0.143 0.857 22 H 0.100 0.900 23 H 0.137 0.863 24 H 0.142 0.858 25 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.435 -0.219 -1.714 5.703 hybrid contribution -0.113 1.098 0.062 1.106 sum 5.322 0.879 -1.651 5.641 Atomic orbital electron populations 1.69764 1.09615 1.32491 1.30597 1.27123 0.95529 1.05453 0.90506 0.84976 0.78614 0.73982 0.80750 1.17360 1.19317 1.17975 1.20007 0.98680 0.90202 1.36302 0.87290 1.19357 0.94313 0.95191 0.92055 1.23284 0.96401 0.93533 0.98263 1.67147 1.32802 0.98662 1.23592 1.21765 0.95518 0.87118 1.06491 1.98241 1.77768 1.31496 1.92480 1.66734 1.06826 1.34302 1.12055 1.21013 0.98767 0.87335 1.00865 1.20635 0.92389 0.97118 1.01753 1.22916 1.02643 0.95808 0.98152 1.22943 0.95370 1.02633 0.98114 0.88616 0.82330 0.85665 0.89967 0.86343 0.85833 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.84 10.94 21.83 0.24 -36.60 15 2 C 0.03 1.43 5.21 85.26 0.44 1.87 15 3 Si 1.00 31.65 29.59 68.60 2.03 33.68 15 4 H -0.25 -7.51 7.11 99.48 0.71 -6.80 15 5 H -0.27 -8.25 7.11 99.48 0.71 -7.54 15 6 H -0.26 -7.98 7.11 99.48 0.71 -7.27 15 7 C -0.42 -19.41 8.37 23.46 0.20 -19.21 15 8 H 0.11 4.52 6.91 -2.91 -0.02 4.50 15 9 C 0.00 -0.09 5.60 -21.10 -0.12 -0.21 15 10 C 0.06 2.99 9.99 85.39 0.85 3.85 15 11 N -0.51 -27.12 10.37 -188.67 -1.96 -29.08 15 12 C 0.18 9.06 8.17 180.67 1.48 10.53 15 13 Cl -0.03 -1.16 29.26 -2.72 -0.08 -1.24 15 14 N -0.48 -24.17 9.44 -176.91 -1.67 -25.84 15 15 C 0.07 3.43 6.55 43.24 0.28 3.71 15 16 C -0.10 -3.82 5.42 -11.54 -0.06 -3.88 15 17 C -0.16 -5.09 10.04 30.59 0.31 -4.78 15 18 C -0.15 -4.80 10.23 30.59 0.31 -4.49 15 19 H 0.30 12.40 8.30 -92.71 -0.77 11.63 15 20 H 0.16 8.37 6.24 -2.91 -0.02 8.36 15 21 H 0.13 4.51 7.09 -2.39 -0.02 4.49 15 22 H 0.08 2.99 7.62 -2.39 -0.02 2.97 15 23 H 0.12 3.02 8.14 -2.38 -0.02 3.00 15 24 H 0.12 3.01 8.14 -2.39 -0.02 2.99 15 25 H 0.07 2.54 8.14 -2.38 -0.02 2.52 15 Total: -1.00 -56.31 241.08 3.48 -52.84 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 1.22 Total: 18.84 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 3.69 Total: -12.60 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -3.39 Total: -91.52 kcal Atomic # 14 Polarization: 31.65 SS G_CDS: 2.03 Total: 33.68 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -56.31 3.48 -52.84 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260684596.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.642 kcal (2) G-P(sol) polarization free energy of solvation -56.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds