Wall clock time and date at job start Mon Mar 30 2020 03:12:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08994 * 110.70159 * 2 1
4 4 C 1.54030 * 110.78938 * 236.67291 * 2 1 3
5 5 C 1.52698 * 105.12399 * 269.17338 * 4 2 1
6 6 C 1.34834 * 136.31727 * 162.09123 * 5 4 2
7 7 S 1.75385 * 110.17307 * 180.02562 * 6 5 4
8 8 C 1.75385 * 91.00569 * 359.97438 * 7 6 5
9 9 C 1.34845 * 110.16968 * 0.02562 * 8 7 6
10 10 C 1.52691 * 136.31580 * 179.97438 * 9 8 7
11 11 O 1.42894 * 110.31140 * 316.85025 * 10 9 8
12 12 C 1.50700 * 110.31169 * 79.02546 * 10 9 8
13 13 H 1.08002 * 120.00520 * 20.88207 * 12 10 9
14 14 C 1.37880 * 120.00071 * 200.88403 * 12 10 9
15 15 N 1.31515 * 120.00127 * 172.78457 * 14 12 10
16 16 Si 1.86801 * 119.99802 * 352.78808 * 14 12 10
17 17 H 1.48499 * 109.47432 * 84.93204 * 16 14 12
18 18 H 1.48498 * 109.46852 * 204.93545 * 16 14 12
19 19 H 1.48494 * 109.47027 * 324.93090 * 16 14 12
20 20 H 1.09002 * 109.46814 * 179.30004 * 1 2 3
21 21 H 1.08997 * 109.47157 * 299.29634 * 1 2 3
22 22 H 1.08997 * 109.47101 * 59.30196 * 1 2 3
23 23 H 1.08990 * 110.31690 * 28.08958 * 4 2 1
24 24 H 1.09010 * 110.31180 * 150.26504 * 4 2 1
25 25 H 1.08005 * 124.91872 * 359.97438 * 6 5 4
26 26 H 1.07996 * 124.92050 * 179.97438 * 8 7 6
27 27 H 0.96693 * 114.00643 * 59.12721 * 11 10 9
28 28 H 0.97000 * 119.99796 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9153 1.0196 0.0000
4 6 2.0767 -0.7912 -1.2032
5 6 2.2380 -2.2232 -0.6983
6 6 2.3738 -3.4438 -1.2547
7 16 2.5122 -4.6664 -0.0048
8 6 2.3780 -3.4456 1.2472
9 6 2.2403 -2.2241 0.6928
10 6 2.0808 -0.7928 1.2002
11 8 1.1556 -0.7526 2.2885
12 6 3.4152 -0.2368 1.6257
13 1 4.3278 -0.6765 1.2511
14 6 3.4712 0.8334 2.4933
15 7 4.6289 1.2287 2.9760
16 14 1.9026 1.7217 2.9831
17 1 1.2670 1.0122 4.1223
18 1 2.2273 3.1137 3.3857
19 1 0.9667 1.7454 1.8305
20 1 -0.3633 -1.0276 -0.0126
21 1 -0.3633 0.5028 0.8962
22 1 -0.3633 0.5246 -0.8836
23 1 1.3681 -0.7593 -2.0306
24 1 3.0409 -0.3888 -1.5141
25 1 2.3937 -3.6405 -2.3166
26 1 2.4014 -3.6435 2.3086
27 1 1.4124 -1.2994 3.0435
28 1 4.6683 1.9818 3.5861
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260723479.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:46
Heat of formation + Delta-G solvation = -15.427461 kcal
Electronic energy + Delta-G solvation = -13827.687264 eV
Core-core repulsion = 11549.273144 eV
Total energy + Delta-G solvation = -2278.414120 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 224.061 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-39.43406 -35.38173 -33.10904 -32.25700 -29.10107 -27.57685 -26.12802 -23.29285
-21.79714 -19.05649 -17.94997 -17.04184 -16.63326 -15.59656 -15.03560 -14.22814
-13.64539 -12.82226 -12.68766 -12.43451 -12.24389 -12.00632 -11.86179 -11.57356
-11.22391 -10.97147 -10.74287 -10.46161 -10.32703 -10.02380 -9.82102 -9.20806
-8.63897 -8.47232 -8.03801 -7.60796 -6.15668 -4.26703 1.56964 2.23654
2.43198 3.34116 3.48728 3.53788 3.69315 4.51625 5.07784 5.26371
5.33982 5.52369 5.66886 5.84515 5.99512 6.06918 6.14454 6.25057
6.34048 6.47319 6.59272 6.88413 6.94608 7.00295 7.19438 7.33914
7.54693 8.19735 8.69777 8.89699 9.45741 10.93475
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.035795 B = 0.011697 C = 0.010525
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 782.041799 B = 2393.169755 C = 2659.797253
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.077 4.077
3 H 0.087 0.913
4 C -0.048 4.048
5 C -0.099 4.099
6 C -0.229 4.229
7 S 0.066 5.934
8 C -0.212 4.212
9 C -0.097 4.097
10 C 0.287 3.713
11 O -0.561 6.561
12 C -0.547 4.547
13 H 0.077 0.923
14 C 0.077 3.923
15 N -0.890 5.890
16 Si 0.931 3.069
17 H -0.288 1.288
18 H -0.323 1.323
19 H -0.258 1.258
20 H 0.047 0.953
21 H 0.062 0.938
22 H 0.039 0.961
23 H 0.065 0.935
24 H 0.082 0.918
25 H 0.154 0.846
26 H 0.156 0.844
27 H 0.368 0.632
28 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.419 -6.619 -5.960 10.979
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.096 4.096
3 H 0.105 0.895
4 C -0.087 4.087
5 C -0.112 4.112
6 C -0.364 4.364
7 S 0.331 5.669
8 C -0.347 4.347
9 C -0.109 4.109
10 C 0.245 3.755
11 O -0.368 6.368
12 C -0.584 4.584
13 H 0.095 0.905
14 C -0.127 4.127
15 N -0.525 5.525
16 Si 0.764 3.236
17 H -0.215 1.215
18 H -0.254 1.254
19 H -0.183 1.183
20 H 0.066 0.934
21 H 0.080 0.920
22 H 0.058 0.942
23 H 0.084 0.916
24 H 0.100 0.900
25 H 0.171 0.829
26 H 0.173 0.827
27 H 0.215 0.785
28 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -6.439 -7.750 -6.265 11.865
hybrid contribution -0.292 1.435 0.714 1.629
sum -6.731 -6.315 -5.551 10.771
Atomic orbital electron populations
1.21687 0.95704 1.00950 1.00665 1.22001 0.94597 0.99615 0.93426
0.89482 1.21009 1.01193 0.88967 0.97573 1.20536 1.00614 0.95131
0.94906 1.24881 1.14484 0.95149 1.01849 1.83585 1.74812 1.11854
0.96677 1.24905 1.12981 0.94871 1.01923 1.21471 0.98085 0.96941
0.94443 1.18809 0.88439 0.84469 0.83821 1.86163 1.51714 1.70299
1.28642 1.21157 0.91163 1.16566 1.29552 0.90530 1.25047 0.97137
0.96205 0.94343 1.69971 1.25427 1.26654 1.30464 0.86008 0.82370
0.75422 0.79750 1.21514 1.25398 1.18338 0.93426 0.91952 0.94237
0.91601 0.89960 0.82874 0.82669 0.78483 0.92464
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.46 8.39 37.16 0.31 -2.15 15
2 C -0.08 -1.60 1.99 -89.55 -0.18 -1.77 15
3 H 0.09 1.91 6.96 -51.93 -0.36 1.55 15
4 C -0.05 -0.87 6.30 -26.35 -0.17 -1.04 15
5 C -0.10 -1.89 6.44 -104.51 -0.67 -2.56 15
6 C -0.23 -3.84 11.22 29.52 0.33 -3.50 15
7 S 0.07 1.05 23.30 -107.50 -2.50 -1.45 15
8 C -0.21 -3.99 11.22 29.53 0.33 -3.66 15
9 C -0.10 -2.03 5.40 -104.51 -0.56 -2.60 15
10 C 0.29 6.51 0.58 -91.40 -0.05 6.46 15
11 O -0.56 -12.36 7.60 -35.23 -0.27 -12.63 15
12 C -0.55 -14.81 8.68 -34.44 -0.30 -15.11 15
13 H 0.08 2.32 8.05 -52.49 -0.42 1.90 15
14 C 0.08 2.16 5.46 -17.82 -0.10 2.06 15
15 N -0.89 -26.61 13.96 55.43 0.77 -25.84 15
16 Si 0.93 22.91 24.48 -169.99 -4.16 18.75 15
17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15
18 H -0.32 -8.17 7.11 56.52 0.40 -7.77 15
19 H -0.26 -6.07 4.65 56.52 0.26 -5.80 15
20 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15
21 H 0.06 1.23 6.44 -51.93 -0.33 0.90 15
22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15
23 H 0.07 1.02 7.92 -51.93 -0.41 0.61 15
24 H 0.08 1.51 8.14 -51.92 -0.42 1.08 15
25 H 0.15 2.12 8.06 -52.48 -0.42 1.70 15
26 H 0.16 2.67 8.06 -52.49 -0.42 2.25 15
27 H 0.37 7.33 9.08 45.56 0.41 7.74 15
28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 15
LS Contribution 241.19 15.07 3.63 3.63
Total: -1.00 -29.99 241.19 -6.09 -36.07
By element:
Atomic # 1 Polarization: 7.83 SS G_CDS: -2.50 Total: 5.33 kcal
Atomic # 6 Polarization: -22.82 SS G_CDS: -1.06 Total: -23.87 kcal
Atomic # 7 Polarization: -26.61 SS G_CDS: 0.77 Total: -25.84 kcal
Atomic # 8 Polarization: -12.36 SS G_CDS: -0.27 Total: -12.63 kcal
Atomic # 14 Polarization: 22.91 SS G_CDS: -4.16 Total: 18.75 kcal
Atomic # 16 Polarization: 1.05 SS G_CDS: -2.50 Total: -1.45 kcal
Total LS contribution 3.63 Total: 3.63 kcal
Total: -29.99 -6.09 -36.07 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260723479.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.647 kcal
(2) G-P(sol) polarization free energy of solvation -29.989 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.342 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.086 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.075 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.427 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds