Wall clock time and date at job start Mon Mar 30 2020 03:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.70159 * 2 1 4 4 C 1.54030 * 110.78938 * 236.67291 * 2 1 3 5 5 C 1.52698 * 105.12399 * 269.17338 * 4 2 1 6 6 C 1.34834 * 136.31727 * 162.09123 * 5 4 2 7 7 S 1.75385 * 110.17307 * 180.02562 * 6 5 4 8 8 C 1.75385 * 91.00569 * 359.97438 * 7 6 5 9 9 C 1.34845 * 110.16968 * 0.02562 * 8 7 6 10 10 C 1.52691 * 136.31580 * 179.97438 * 9 8 7 11 11 O 1.42894 * 110.31140 * 316.85025 * 10 9 8 12 12 C 1.50700 * 110.31169 * 79.02546 * 10 9 8 13 13 H 1.08002 * 120.00520 * 20.88207 * 12 10 9 14 14 C 1.37880 * 120.00071 * 200.88403 * 12 10 9 15 15 N 1.31515 * 120.00127 * 172.78457 * 14 12 10 16 16 Si 1.86801 * 119.99802 * 352.78808 * 14 12 10 17 17 H 1.48499 * 109.47432 * 84.93204 * 16 14 12 18 18 H 1.48498 * 109.46852 * 204.93545 * 16 14 12 19 19 H 1.48494 * 109.47027 * 324.93090 * 16 14 12 20 20 H 1.09002 * 109.46814 * 179.30004 * 1 2 3 21 21 H 1.08997 * 109.47157 * 299.29634 * 1 2 3 22 22 H 1.08997 * 109.47101 * 59.30196 * 1 2 3 23 23 H 1.08990 * 110.31690 * 28.08958 * 4 2 1 24 24 H 1.09010 * 110.31180 * 150.26504 * 4 2 1 25 25 H 1.08005 * 124.91872 * 359.97438 * 6 5 4 26 26 H 1.07996 * 124.92050 * 179.97438 * 8 7 6 27 27 H 0.96693 * 114.00643 * 59.12721 * 11 10 9 28 28 H 0.97000 * 119.99796 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9153 1.0196 0.0000 4 6 2.0767 -0.7912 -1.2032 5 6 2.2380 -2.2232 -0.6983 6 6 2.3738 -3.4438 -1.2547 7 16 2.5122 -4.6664 -0.0048 8 6 2.3780 -3.4456 1.2472 9 6 2.2403 -2.2241 0.6928 10 6 2.0808 -0.7928 1.2002 11 8 1.1556 -0.7526 2.2885 12 6 3.4152 -0.2368 1.6257 13 1 4.3278 -0.6765 1.2511 14 6 3.4712 0.8334 2.4933 15 7 4.6289 1.2287 2.9760 16 14 1.9026 1.7217 2.9831 17 1 1.2670 1.0122 4.1223 18 1 2.2273 3.1137 3.3857 19 1 0.9667 1.7454 1.8305 20 1 -0.3633 -1.0276 -0.0126 21 1 -0.3633 0.5028 0.8962 22 1 -0.3633 0.5246 -0.8836 23 1 1.3681 -0.7593 -2.0306 24 1 3.0409 -0.3888 -1.5141 25 1 2.3937 -3.6405 -2.3166 26 1 2.4014 -3.6435 2.3086 27 1 1.4124 -1.2994 3.0435 28 1 4.6683 1.9818 3.5861 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260723479.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:46 Heat of formation + Delta-G solvation = -15.427461 kcal Electronic energy + Delta-G solvation = -13827.687264 eV Core-core repulsion = 11549.273144 eV Total energy + Delta-G solvation = -2278.414120 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.43406 -35.38173 -33.10904 -32.25700 -29.10107 -27.57685 -26.12802 -23.29285 -21.79714 -19.05649 -17.94997 -17.04184 -16.63326 -15.59656 -15.03560 -14.22814 -13.64539 -12.82226 -12.68766 -12.43451 -12.24389 -12.00632 -11.86179 -11.57356 -11.22391 -10.97147 -10.74287 -10.46161 -10.32703 -10.02380 -9.82102 -9.20806 -8.63897 -8.47232 -8.03801 -7.60796 -6.15668 -4.26703 1.56964 2.23654 2.43198 3.34116 3.48728 3.53788 3.69315 4.51625 5.07784 5.26371 5.33982 5.52369 5.66886 5.84515 5.99512 6.06918 6.14454 6.25057 6.34048 6.47319 6.59272 6.88413 6.94608 7.00295 7.19438 7.33914 7.54693 8.19735 8.69777 8.89699 9.45741 10.93475 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.035795 B = 0.011697 C = 0.010525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.041799 B = 2393.169755 C = 2659.797253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 H 0.087 0.913 4 C -0.048 4.048 5 C -0.099 4.099 6 C -0.229 4.229 7 S 0.066 5.934 8 C -0.212 4.212 9 C -0.097 4.097 10 C 0.287 3.713 11 O -0.561 6.561 12 C -0.547 4.547 13 H 0.077 0.923 14 C 0.077 3.923 15 N -0.890 5.890 16 Si 0.931 3.069 17 H -0.288 1.288 18 H -0.323 1.323 19 H -0.258 1.258 20 H 0.047 0.953 21 H 0.062 0.938 22 H 0.039 0.961 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.154 0.846 26 H 0.156 0.844 27 H 0.368 0.632 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.419 -6.619 -5.960 10.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.096 4.096 3 H 0.105 0.895 4 C -0.087 4.087 5 C -0.112 4.112 6 C -0.364 4.364 7 S 0.331 5.669 8 C -0.347 4.347 9 C -0.109 4.109 10 C 0.245 3.755 11 O -0.368 6.368 12 C -0.584 4.584 13 H 0.095 0.905 14 C -0.127 4.127 15 N -0.525 5.525 16 Si 0.764 3.236 17 H -0.215 1.215 18 H -0.254 1.254 19 H -0.183 1.183 20 H 0.066 0.934 21 H 0.080 0.920 22 H 0.058 0.942 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.171 0.829 26 H 0.173 0.827 27 H 0.215 0.785 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.439 -7.750 -6.265 11.865 hybrid contribution -0.292 1.435 0.714 1.629 sum -6.731 -6.315 -5.551 10.771 Atomic orbital electron populations 1.21687 0.95704 1.00950 1.00665 1.22001 0.94597 0.99615 0.93426 0.89482 1.21009 1.01193 0.88967 0.97573 1.20536 1.00614 0.95131 0.94906 1.24881 1.14484 0.95149 1.01849 1.83585 1.74812 1.11854 0.96677 1.24905 1.12981 0.94871 1.01923 1.21471 0.98085 0.96941 0.94443 1.18809 0.88439 0.84469 0.83821 1.86163 1.51714 1.70299 1.28642 1.21157 0.91163 1.16566 1.29552 0.90530 1.25047 0.97137 0.96205 0.94343 1.69971 1.25427 1.26654 1.30464 0.86008 0.82370 0.75422 0.79750 1.21514 1.25398 1.18338 0.93426 0.91952 0.94237 0.91601 0.89960 0.82874 0.82669 0.78483 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.39 37.16 0.31 -2.15 15 2 C -0.08 -1.60 1.99 -89.55 -0.18 -1.77 15 3 H 0.09 1.91 6.96 -51.93 -0.36 1.55 15 4 C -0.05 -0.87 6.30 -26.35 -0.17 -1.04 15 5 C -0.10 -1.89 6.44 -104.51 -0.67 -2.56 15 6 C -0.23 -3.84 11.22 29.52 0.33 -3.50 15 7 S 0.07 1.05 23.30 -107.50 -2.50 -1.45 15 8 C -0.21 -3.99 11.22 29.53 0.33 -3.66 15 9 C -0.10 -2.03 5.40 -104.51 -0.56 -2.60 15 10 C 0.29 6.51 0.58 -91.40 -0.05 6.46 15 11 O -0.56 -12.36 7.60 -35.23 -0.27 -12.63 15 12 C -0.55 -14.81 8.68 -34.44 -0.30 -15.11 15 13 H 0.08 2.32 8.05 -52.49 -0.42 1.90 15 14 C 0.08 2.16 5.46 -17.82 -0.10 2.06 15 15 N -0.89 -26.61 13.96 55.43 0.77 -25.84 15 16 Si 0.93 22.91 24.48 -169.99 -4.16 18.75 15 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 18 H -0.32 -8.17 7.11 56.52 0.40 -7.77 15 19 H -0.26 -6.07 4.65 56.52 0.26 -5.80 15 20 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 21 H 0.06 1.23 6.44 -51.93 -0.33 0.90 15 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 23 H 0.07 1.02 7.92 -51.93 -0.41 0.61 15 24 H 0.08 1.51 8.14 -51.92 -0.42 1.08 15 25 H 0.15 2.12 8.06 -52.48 -0.42 1.70 15 26 H 0.16 2.67 8.06 -52.49 -0.42 2.25 15 27 H 0.37 7.33 9.08 45.56 0.41 7.74 15 28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 15 LS Contribution 241.19 15.07 3.63 3.63 Total: -1.00 -29.99 241.19 -6.09 -36.07 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -2.50 Total: 5.33 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -1.06 Total: -23.87 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.77 Total: -25.84 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.27 Total: -12.63 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.16 Total: 18.75 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.50 Total: -1.45 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -29.99 -6.09 -36.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260723479.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.647 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds