Wall clock time and date at job start Mon Mar 30 2020 03:12:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08994 * 110.70159 * 2 1
4 4 C 1.54030 * 110.78938 * 236.67291 * 2 1 3
5 5 C 1.52698 * 105.12399 * 269.17338 * 4 2 1
6 6 C 1.34834 * 136.31727 * 162.09123 * 5 4 2
7 7 S 1.75385 * 110.17307 * 180.02562 * 6 5 4
8 8 C 1.75385 * 91.00569 * 359.97438 * 7 6 5
9 9 C 1.34845 * 110.16968 * 0.02562 * 8 7 6
10 10 C 1.52691 * 136.31580 * 179.97438 * 9 8 7
11 11 O 1.42894 * 110.31140 * 316.85025 * 10 9 8
12 12 C 1.50700 * 110.31169 * 79.02546 * 10 9 8
13 13 H 1.08002 * 120.00520 * 20.88207 * 12 10 9
14 14 C 1.37880 * 120.00071 * 200.88403 * 12 10 9
15 15 N 1.31515 * 120.00127 * 172.78457 * 14 12 10
16 16 Si 1.86801 * 119.99802 * 352.78808 * 14 12 10
17 17 H 1.48499 * 109.47432 * 84.93204 * 16 14 12
18 18 H 1.48498 * 109.46852 * 204.93545 * 16 14 12
19 19 H 1.48494 * 109.47027 * 324.93090 * 16 14 12
20 20 H 1.09002 * 109.46814 * 179.30004 * 1 2 3
21 21 H 1.08997 * 109.47157 * 299.29634 * 1 2 3
22 22 H 1.08997 * 109.47101 * 59.30196 * 1 2 3
23 23 H 1.08990 * 110.31690 * 28.08958 * 4 2 1
24 24 H 1.09010 * 110.31180 * 150.26504 * 4 2 1
25 25 H 1.08005 * 124.91872 * 359.97438 * 6 5 4
26 26 H 1.07996 * 124.92050 * 179.97438 * 8 7 6
27 27 H 0.96693 * 114.00643 * 59.12721 * 11 10 9
28 28 H 0.97000 * 119.99796 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9153 1.0196 0.0000
4 6 2.0767 -0.7912 -1.2032
5 6 2.2380 -2.2232 -0.6983
6 6 2.3738 -3.4438 -1.2547
7 16 2.5122 -4.6664 -0.0048
8 6 2.3780 -3.4456 1.2472
9 6 2.2403 -2.2241 0.6928
10 6 2.0808 -0.7928 1.2002
11 8 1.1556 -0.7526 2.2885
12 6 3.4152 -0.2368 1.6257
13 1 4.3278 -0.6765 1.2511
14 6 3.4712 0.8334 2.4933
15 7 4.6289 1.2287 2.9760
16 14 1.9026 1.7217 2.9831
17 1 1.2670 1.0122 4.1223
18 1 2.2273 3.1137 3.3857
19 1 0.9667 1.7454 1.8305
20 1 -0.3633 -1.0276 -0.0126
21 1 -0.3633 0.5028 0.8962
22 1 -0.3633 0.5246 -0.8836
23 1 1.3681 -0.7593 -2.0306
24 1 3.0409 -0.3888 -1.5141
25 1 2.3937 -3.6405 -2.3166
26 1 2.4014 -3.6435 2.3086
27 1 1.4124 -1.2994 3.0435
28 1 4.6683 1.9818 3.5861
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260723479.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:45
Heat of formation + Delta-G solvation = -36.088365 kcal
Electronic energy + Delta-G solvation = -13828.583188 eV
Core-core repulsion = 11549.273144 eV
Total energy + Delta-G solvation = -2279.310044 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 224.061 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.98044 -37.03254 -34.67271 -34.35856 -30.61457 -29.22771 -27.76045 -25.01937
-23.34647 -20.66705 -19.60432 -18.90452 -17.97669 -17.19559 -17.01463 -15.81507
-15.36348 -14.73459 -14.16075 -13.95190 -13.82501 -13.58533 -13.43819 -13.24552
-12.75680 -12.61216 -12.39817 -12.21940 -11.84915 -11.75129 -11.44135 -11.15697
-10.63652 -10.31405 -9.44694 -8.97572 -8.34194 -6.46862 0.17263 0.90561
1.05085 1.49727 1.50925 1.70767 1.87129 2.44759 2.99644 3.66369
3.83730 4.05304 4.29377 4.37391 4.52170 4.61257 4.70870 4.86264
4.87886 5.01239 5.16357 5.31710 5.42131 5.46695 5.60432 5.73690
5.82787 6.08265 6.59310 6.98984 7.31248 8.79183
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.035795 B = 0.011697 C = 0.010525
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 782.041799 B = 2393.169755 C = 2659.797253
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.083 4.083
3 H 0.066 0.934
4 C -0.043 4.043
5 C -0.126 4.126
6 C -0.221 4.221
7 S 0.135 5.865
8 C -0.233 4.233
9 C -0.130 4.130
10 C 0.283 3.717
11 O -0.562 6.562
12 C -0.540 4.540
13 H 0.030 0.970
14 C 0.028 3.972
15 N -0.940 5.940
16 Si 0.990 3.010
17 H -0.282 1.282
18 H -0.333 1.333
19 H -0.240 1.240
20 H 0.050 0.950
21 H 0.047 0.953
22 H 0.069 0.931
23 H 0.099 0.901
24 H 0.071 0.929
25 H 0.187 0.813
26 H 0.162 0.838
27 H 0.374 0.626
28 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.339 -8.039 -7.447 13.771
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.102 4.102
3 H 0.085 0.915
4 C -0.082 4.082
5 C -0.139 4.139
6 C -0.356 4.356
7 S 0.400 5.600
8 C -0.368 4.368
9 C -0.143 4.143
10 C 0.241 3.759
11 O -0.369 6.369
12 C -0.578 4.578
13 H 0.048 0.952
14 C -0.172 4.172
15 N -0.578 5.578
16 Si 0.821 3.179
17 H -0.209 1.209
18 H -0.265 1.265
19 H -0.164 1.164
20 H 0.070 0.930
21 H 0.066 0.934
22 H 0.088 0.912
23 H 0.117 0.883
24 H 0.090 0.910
25 H 0.204 0.796
26 H 0.179 0.821
27 H 0.222 0.778
28 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -8.373 -9.197 -7.766 14.663
hybrid contribution 0.399 1.703 1.154 2.095
sum -7.974 -7.494 -6.612 12.786
Atomic orbital electron populations
1.21595 0.93624 1.01444 1.01404 1.21957 0.96338 0.98471 0.93439
0.91542 1.20945 1.01439 0.88353 0.97479 1.20603 1.02908 0.96196
0.94180 1.25373 1.11837 0.94540 1.03878 1.83348 1.72824 1.09460
0.94349 1.25263 1.12268 0.95731 1.03558 1.21389 1.00686 0.96429
0.95752 1.18692 0.86299 0.86404 0.84479 1.86119 1.51221 1.70596
1.28988 1.21363 0.92073 1.15821 1.28529 0.95196 1.25811 0.99705
0.97040 0.94610 1.70098 1.27681 1.27820 1.32247 0.85059 0.79165
0.73623 0.80028 1.20896 1.26508 1.16441 0.93048 0.93387 0.91216
0.88280 0.91017 0.79565 0.82090 0.77784 0.92501
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.24 8.39 71.98 0.60 -3.63 15
2 C -0.08 -3.32 1.99 -10.10 -0.02 -3.34 15
3 H 0.07 2.89 6.96 -2.39 -0.02 2.87 15
4 C -0.04 -1.49 6.30 30.84 0.19 -1.29 15
5 C -0.13 -4.56 6.44 -19.79 -0.13 -4.69 15
6 C -0.22 -6.61 11.22 67.04 0.75 -5.86 15
7 S 0.13 3.84 23.30 -56.49 -1.32 2.52 15
8 C -0.23 -8.42 11.22 67.04 0.75 -7.67 15
9 C -0.13 -5.31 5.40 -19.79 -0.11 -5.41 15
10 C 0.28 12.82 0.58 -11.30 -0.01 12.81 15
11 O -0.56 -24.25 7.60 -148.98 -1.13 -25.39 15
12 C -0.54 -30.18 8.68 25.60 0.22 -29.96 15
13 H 0.03 1.90 8.05 -2.91 -0.02 1.88 15
14 C 0.03 1.59 5.46 84.66 0.46 2.05 15
15 N -0.94 -58.43 13.96 21.45 0.30 -58.13 15
16 Si 0.99 47.90 24.48 68.60 1.68 49.58 15
17 H -0.28 -13.27 7.11 99.48 0.71 -12.56 15
18 H -0.33 -16.58 7.11 99.48 0.71 -15.87 15
19 H -0.24 -10.82 4.65 99.48 0.46 -10.36 15
20 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15
21 H 0.05 1.77 6.44 -2.39 -0.02 1.75 15
22 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15
23 H 0.10 2.73 7.92 -2.39 -0.02 2.71 15
24 H 0.07 2.59 8.14 -2.38 -0.02 2.57 15
25 H 0.19 4.23 8.06 -2.91 -0.02 4.20 15
26 H 0.16 5.40 8.06 -2.91 -0.02 5.38 15
27 H 0.37 14.76 9.08 -74.06 -0.67 14.09 15
28 H 0.27 15.63 8.31 -92.71 -0.77 14.86 15
Total: -1.00 -65.80 241.19 2.51 -63.29
By element:
Atomic # 1 Polarization: 14.88 SS G_CDS: 0.25 Total: 15.14 kcal
Atomic # 6 Polarization: -49.73 SS G_CDS: 2.73 Total: -47.01 kcal
Atomic # 7 Polarization: -58.43 SS G_CDS: 0.30 Total: -58.13 kcal
Atomic # 8 Polarization: -24.25 SS G_CDS: -1.13 Total: -25.39 kcal
Atomic # 14 Polarization: 47.90 SS G_CDS: 1.68 Total: 49.58 kcal
Atomic # 16 Polarization: 3.84 SS G_CDS: -1.32 Total: 2.52 kcal
Total: -65.80 2.51 -63.29 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260723479.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.197 kcal
(2) G-P(sol) polarization free energy of solvation -65.796 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.600 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.285 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.088 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds