Wall clock time and date at job start Mon Mar 30 2020 03:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.70159 * 2 1 4 4 C 1.54030 * 110.78938 * 236.67291 * 2 1 3 5 5 C 1.52698 * 105.12399 * 269.17338 * 4 2 1 6 6 C 1.34834 * 136.31727 * 162.09123 * 5 4 2 7 7 S 1.75385 * 110.17307 * 180.02562 * 6 5 4 8 8 C 1.75385 * 91.00569 * 359.97438 * 7 6 5 9 9 C 1.34845 * 110.16968 * 0.02562 * 8 7 6 10 10 C 1.52691 * 136.31580 * 179.97438 * 9 8 7 11 11 O 1.42894 * 110.31140 * 316.85025 * 10 9 8 12 12 C 1.50700 * 110.31169 * 79.02546 * 10 9 8 13 13 H 1.08002 * 120.00520 * 20.88207 * 12 10 9 14 14 C 1.37880 * 120.00071 * 200.88403 * 12 10 9 15 15 N 1.31515 * 120.00127 * 172.78457 * 14 12 10 16 16 Si 1.86801 * 119.99802 * 352.78808 * 14 12 10 17 17 H 1.48499 * 109.47432 * 84.93204 * 16 14 12 18 18 H 1.48498 * 109.46852 * 204.93545 * 16 14 12 19 19 H 1.48494 * 109.47027 * 324.93090 * 16 14 12 20 20 H 1.09002 * 109.46814 * 179.30004 * 1 2 3 21 21 H 1.08997 * 109.47157 * 299.29634 * 1 2 3 22 22 H 1.08997 * 109.47101 * 59.30196 * 1 2 3 23 23 H 1.08990 * 110.31690 * 28.08958 * 4 2 1 24 24 H 1.09010 * 110.31180 * 150.26504 * 4 2 1 25 25 H 1.08005 * 124.91872 * 359.97438 * 6 5 4 26 26 H 1.07996 * 124.92050 * 179.97438 * 8 7 6 27 27 H 0.96693 * 114.00643 * 59.12721 * 11 10 9 28 28 H 0.97000 * 119.99796 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9153 1.0196 0.0000 4 6 2.0767 -0.7912 -1.2032 5 6 2.2380 -2.2232 -0.6983 6 6 2.3738 -3.4438 -1.2547 7 16 2.5122 -4.6664 -0.0048 8 6 2.3780 -3.4456 1.2472 9 6 2.2403 -2.2241 0.6928 10 6 2.0808 -0.7928 1.2002 11 8 1.1556 -0.7526 2.2885 12 6 3.4152 -0.2368 1.6257 13 1 4.3278 -0.6765 1.2511 14 6 3.4712 0.8334 2.4933 15 7 4.6289 1.2287 2.9760 16 14 1.9026 1.7217 2.9831 17 1 1.2670 1.0122 4.1223 18 1 2.2273 3.1137 3.3857 19 1 0.9667 1.7454 1.8305 20 1 -0.3633 -1.0276 -0.0126 21 1 -0.3633 0.5028 0.8962 22 1 -0.3633 0.5246 -0.8836 23 1 1.3681 -0.7593 -2.0306 24 1 3.0409 -0.3888 -1.5141 25 1 2.3937 -3.6405 -2.3166 26 1 2.4014 -3.6435 2.3086 27 1 1.4124 -1.2994 3.0435 28 1 4.6683 1.9818 3.5861 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260723479.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:45 Heat of formation + Delta-G solvation = -36.088365 kcal Electronic energy + Delta-G solvation = -13828.583188 eV Core-core repulsion = 11549.273144 eV Total energy + Delta-G solvation = -2279.310044 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.98044 -37.03254 -34.67271 -34.35856 -30.61457 -29.22771 -27.76045 -25.01937 -23.34647 -20.66705 -19.60432 -18.90452 -17.97669 -17.19559 -17.01463 -15.81507 -15.36348 -14.73459 -14.16075 -13.95190 -13.82501 -13.58533 -13.43819 -13.24552 -12.75680 -12.61216 -12.39817 -12.21940 -11.84915 -11.75129 -11.44135 -11.15697 -10.63652 -10.31405 -9.44694 -8.97572 -8.34194 -6.46862 0.17263 0.90561 1.05085 1.49727 1.50925 1.70767 1.87129 2.44759 2.99644 3.66369 3.83730 4.05304 4.29377 4.37391 4.52170 4.61257 4.70870 4.86264 4.87886 5.01239 5.16357 5.31710 5.42131 5.46695 5.60432 5.73690 5.82787 6.08265 6.59310 6.98984 7.31248 8.79183 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.035795 B = 0.011697 C = 0.010525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.041799 B = 2393.169755 C = 2659.797253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.083 4.083 3 H 0.066 0.934 4 C -0.043 4.043 5 C -0.126 4.126 6 C -0.221 4.221 7 S 0.135 5.865 8 C -0.233 4.233 9 C -0.130 4.130 10 C 0.283 3.717 11 O -0.562 6.562 12 C -0.540 4.540 13 H 0.030 0.970 14 C 0.028 3.972 15 N -0.940 5.940 16 Si 0.990 3.010 17 H -0.282 1.282 18 H -0.333 1.333 19 H -0.240 1.240 20 H 0.050 0.950 21 H 0.047 0.953 22 H 0.069 0.931 23 H 0.099 0.901 24 H 0.071 0.929 25 H 0.187 0.813 26 H 0.162 0.838 27 H 0.374 0.626 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.339 -8.039 -7.447 13.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.082 4.082 5 C -0.139 4.139 6 C -0.356 4.356 7 S 0.400 5.600 8 C -0.368 4.368 9 C -0.143 4.143 10 C 0.241 3.759 11 O -0.369 6.369 12 C -0.578 4.578 13 H 0.048 0.952 14 C -0.172 4.172 15 N -0.578 5.578 16 Si 0.821 3.179 17 H -0.209 1.209 18 H -0.265 1.265 19 H -0.164 1.164 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.088 0.912 23 H 0.117 0.883 24 H 0.090 0.910 25 H 0.204 0.796 26 H 0.179 0.821 27 H 0.222 0.778 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.373 -9.197 -7.766 14.663 hybrid contribution 0.399 1.703 1.154 2.095 sum -7.974 -7.494 -6.612 12.786 Atomic orbital electron populations 1.21595 0.93624 1.01444 1.01404 1.21957 0.96338 0.98471 0.93439 0.91542 1.20945 1.01439 0.88353 0.97479 1.20603 1.02908 0.96196 0.94180 1.25373 1.11837 0.94540 1.03878 1.83348 1.72824 1.09460 0.94349 1.25263 1.12268 0.95731 1.03558 1.21389 1.00686 0.96429 0.95752 1.18692 0.86299 0.86404 0.84479 1.86119 1.51221 1.70596 1.28988 1.21363 0.92073 1.15821 1.28529 0.95196 1.25811 0.99705 0.97040 0.94610 1.70098 1.27681 1.27820 1.32247 0.85059 0.79165 0.73623 0.80028 1.20896 1.26508 1.16441 0.93048 0.93387 0.91216 0.88280 0.91017 0.79565 0.82090 0.77784 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.24 8.39 71.98 0.60 -3.63 15 2 C -0.08 -3.32 1.99 -10.10 -0.02 -3.34 15 3 H 0.07 2.89 6.96 -2.39 -0.02 2.87 15 4 C -0.04 -1.49 6.30 30.84 0.19 -1.29 15 5 C -0.13 -4.56 6.44 -19.79 -0.13 -4.69 15 6 C -0.22 -6.61 11.22 67.04 0.75 -5.86 15 7 S 0.13 3.84 23.30 -56.49 -1.32 2.52 15 8 C -0.23 -8.42 11.22 67.04 0.75 -7.67 15 9 C -0.13 -5.31 5.40 -19.79 -0.11 -5.41 15 10 C 0.28 12.82 0.58 -11.30 -0.01 12.81 15 11 O -0.56 -24.25 7.60 -148.98 -1.13 -25.39 15 12 C -0.54 -30.18 8.68 25.60 0.22 -29.96 15 13 H 0.03 1.90 8.05 -2.91 -0.02 1.88 15 14 C 0.03 1.59 5.46 84.66 0.46 2.05 15 15 N -0.94 -58.43 13.96 21.45 0.30 -58.13 15 16 Si 0.99 47.90 24.48 68.60 1.68 49.58 15 17 H -0.28 -13.27 7.11 99.48 0.71 -12.56 15 18 H -0.33 -16.58 7.11 99.48 0.71 -15.87 15 19 H -0.24 -10.82 4.65 99.48 0.46 -10.36 15 20 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.05 1.77 6.44 -2.39 -0.02 1.75 15 22 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 23 H 0.10 2.73 7.92 -2.39 -0.02 2.71 15 24 H 0.07 2.59 8.14 -2.38 -0.02 2.57 15 25 H 0.19 4.23 8.06 -2.91 -0.02 4.20 15 26 H 0.16 5.40 8.06 -2.91 -0.02 5.38 15 27 H 0.37 14.76 9.08 -74.06 -0.67 14.09 15 28 H 0.27 15.63 8.31 -92.71 -0.77 14.86 15 Total: -1.00 -65.80 241.19 2.51 -63.29 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.25 Total: 15.14 kcal Atomic # 6 Polarization: -49.73 SS G_CDS: 2.73 Total: -47.01 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.30 Total: -58.13 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -1.13 Total: -25.39 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.68 Total: 49.58 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.32 Total: 2.52 kcal Total: -65.80 2.51 -63.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260723479.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.197 kcal (2) G-P(sol) polarization free energy of solvation -65.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds