Wall clock time and date at job start Mon Mar 30 2020 03:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.88931 * 2 1 4 4 C 1.54215 * 110.98079 * 236.16713 * 2 1 3 5 5 C 1.52109 * 104.84131 * 215.40617 * 4 2 1 6 6 S 1.76536 * 139.39802 * 197.43041 * 5 4 2 7 7 C 1.75582 * 91.08044 * 179.97438 * 6 5 4 8 8 C 1.32632 * 109.65312 * 0.02562 * 7 6 5 9 9 C 1.33823 * 110.67826 * 17.42282 * 5 4 2 10 10 C 1.52799 * 109.75275 * 0.05935 * 9 5 4 11 11 O 1.42898 * 110.41166 * 101.38721 * 10 9 5 12 12 C 1.50691 * 110.32766 * 223.55947 * 10 9 5 13 13 H 1.08002 * 120.00259 * 230.42228 * 12 10 9 14 14 C 1.37886 * 119.99933 * 50.42573 * 12 10 9 15 15 N 1.31515 * 119.99743 * 207.77013 * 14 12 10 16 16 Si 1.86796 * 119.99800 * 27.77390 * 14 12 10 17 17 H 1.48501 * 109.47412 * 84.25812 * 16 14 12 18 18 H 1.48508 * 109.46902 * 204.25878 * 16 14 12 19 19 H 1.48497 * 109.47339 * 324.25348 * 16 14 12 20 20 H 1.09002 * 109.47265 * 296.17048 * 1 2 3 21 21 H 1.09000 * 109.46947 * 56.17864 * 1 2 3 22 22 H 1.08997 * 109.46440 * 176.17484 * 1 2 3 23 23 H 1.09000 * 110.36533 * 334.24825 * 4 2 1 24 24 H 1.08992 * 110.36448 * 96.56257 * 4 2 1 25 25 H 1.07998 * 125.17540 * 180.02562 * 7 6 5 26 26 H 1.07998 * 122.18125 * 180.02562 * 8 7 6 27 27 H 0.96706 * 113.99924 * 57.76050 * 11 10 9 28 28 H 0.97005 * 119.99660 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0822 -0.8017 -1.1961 5 6 3.3407 -1.4730 -0.6675 6 16 4.8015 -2.2530 -1.2791 7 6 5.3663 -2.5524 0.3563 8 6 4.4833 -2.0809 1.2264 9 6 3.3483 -1.4758 0.6707 10 6 2.0819 -0.8011 1.1957 11 8 1.1321 -1.7825 1.6163 12 6 2.4165 0.1248 2.3365 13 1 1.8661 0.0606 3.2635 14 6 3.4255 1.0542 2.1968 15 7 4.0902 1.4670 3.2539 16 14 3.8482 1.7268 0.5062 17 1 2.9377 2.8536 0.1799 18 1 5.2530 2.2084 0.5022 19 1 3.6903 0.6532 -0.5074 20 1 -0.3634 0.4532 0.9223 21 1 -0.3633 0.5720 -0.8538 22 1 -0.3632 -1.0254 -0.0686 23 1 1.3587 -1.5512 -1.5168 24 1 2.3271 -0.1324 -2.0207 25 1 6.2919 -3.0454 0.6144 26 1 4.6301 -2.1576 2.2936 27 1 1.4626 -2.3827 2.2987 28 1 4.7997 2.1211 3.1557 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260729509.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:32 Heat of formation + Delta-G solvation = 8.092788 kcal Electronic energy + Delta-G solvation = -14011.043495 eV Core-core repulsion = 11733.649289 eV Total energy + Delta-G solvation = -2277.394206 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.43915 -35.22339 -33.63192 -32.51032 -29.41573 -27.72684 -24.99395 -22.86973 -21.76139 -19.71642 -18.08924 -16.99809 -16.50127 -15.59952 -14.65282 -13.94757 -13.56420 -13.39722 -12.91663 -12.58308 -12.45534 -11.81091 -11.45133 -11.39555 -11.11809 -10.98869 -10.59867 -10.46326 -10.34322 -9.98422 -9.77518 -9.30989 -8.81621 -8.22157 -7.80979 -7.55473 -6.30330 -4.18585 1.71348 2.15482 2.63752 3.25442 3.36391 3.43311 3.54462 4.38662 4.95881 5.21147 5.40270 5.57150 5.69003 5.77730 6.09052 6.11414 6.21550 6.38474 6.44033 6.49419 6.81727 6.83213 6.96532 7.13207 7.17957 7.33684 7.57302 8.32857 8.63095 8.93272 9.45284 10.80710 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.023585 B = 0.017515 C = 0.014350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.895436 B = 1598.237518 C = 1950.700296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.082 4.082 3 H 0.077 0.923 4 C -0.037 4.037 5 C -0.192 4.192 6 S 0.048 5.952 7 C -0.234 4.234 8 C -0.081 4.081 9 C -0.120 4.120 10 C 0.297 3.703 11 O -0.559 6.559 12 C -0.559 4.559 13 H 0.080 0.920 14 C 0.102 3.898 15 N -0.865 5.865 16 Si 0.822 3.178 17 H -0.278 1.278 18 H -0.299 1.299 19 H -0.220 1.220 20 H 0.062 0.938 21 H 0.037 0.963 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.158 0.842 26 H 0.138 0.862 27 H 0.366 0.634 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 -5.838 -7.522 9.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.102 4.102 3 H 0.095 0.905 4 C -0.077 4.077 5 C -0.308 4.308 6 S 0.311 5.689 7 C -0.368 4.368 8 C -0.112 4.112 9 C -0.132 4.132 10 C 0.254 3.746 11 O -0.364 6.364 12 C -0.595 4.595 13 H 0.098 0.902 14 C -0.105 4.105 15 N -0.499 5.499 16 Si 0.649 3.351 17 H -0.205 1.205 18 H -0.227 1.227 19 H -0.143 1.143 20 H 0.081 0.919 21 H 0.057 0.943 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.175 0.825 26 H 0.155 0.845 27 H 0.212 0.788 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.257 -5.764 -9.318 10.960 hybrid contribution 0.579 0.737 1.049 1.406 sum 0.322 -5.027 -8.269 9.683 Atomic orbital electron populations 1.21413 0.94130 1.01505 1.00765 1.22233 0.96442 0.98171 0.93349 0.90533 1.20964 0.91155 0.97415 0.98183 1.25652 0.99697 1.07047 0.98423 1.83517 1.16403 1.59666 1.09301 1.25070 1.04983 1.12066 0.94656 1.19793 0.92886 0.97485 1.01014 1.21800 0.99029 0.99170 0.93203 1.18415 0.79529 0.84776 0.91832 1.86310 1.42132 1.47644 1.60273 1.21264 1.19183 1.18899 1.00155 0.90182 1.24759 0.93702 0.95971 0.96077 1.70115 1.19354 1.29899 1.30494 0.88019 0.76783 0.81569 0.88686 1.20459 1.22683 1.14333 0.91927 0.94347 0.92221 0.90555 0.92140 0.82466 0.84479 0.78784 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 8.61 37.16 0.32 -1.92 15 2 C -0.08 -1.75 2.36 -89.38 -0.21 -1.96 15 3 H 0.08 1.75 3.42 -51.93 -0.18 1.57 15 4 C -0.04 -0.72 5.57 -26.55 -0.15 -0.87 15 5 C -0.19 -3.94 5.68 -35.16 -0.20 -4.14 15 6 S 0.05 0.86 23.35 -107.50 -2.51 -1.65 15 7 C -0.23 -4.21 11.18 28.83 0.32 -3.89 15 8 C -0.08 -1.68 10.17 -40.77 -0.41 -2.10 15 9 C -0.12 -2.64 3.70 -104.42 -0.39 -3.03 15 10 C 0.30 6.86 0.91 -91.28 -0.08 6.78 15 11 O -0.56 -11.95 11.55 -35.23 -0.41 -12.36 15 12 C -0.56 -15.11 9.04 -34.44 -0.31 -15.42 15 13 H 0.08 2.36 8.06 -52.49 -0.42 1.94 15 14 C 0.10 2.83 5.15 -17.82 -0.09 2.74 15 15 N -0.87 -25.48 13.96 55.43 0.77 -24.70 15 16 Si 0.82 20.47 23.85 -169.99 -4.05 16.41 15 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 18 H -0.30 -7.74 7.11 56.52 0.40 -7.33 15 19 H -0.22 -5.10 2.91 56.52 0.16 -4.94 15 20 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.06 1.07 7.41 -51.93 -0.38 0.68 15 23 H 0.08 1.33 7.84 -51.93 -0.41 0.92 15 24 H 0.06 1.07 8.03 -51.93 -0.42 0.65 15 25 H 0.16 2.33 8.06 -52.49 -0.42 1.90 15 26 H 0.14 2.82 8.06 -52.49 -0.42 2.39 15 27 H 0.37 6.88 9.07 45.56 0.41 7.30 15 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 LS Contribution 236.71 15.07 3.57 3.57 Total: -1.00 -29.54 236.71 -6.29 -35.83 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -2.46 Total: 6.72 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: -1.20 Total: -23.81 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.77 Total: -24.70 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.41 Total: -12.36 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.05 Total: 16.41 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.54 -6.29 -35.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260729509.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.919 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds