Wall clock time and date at job start Mon Mar 30 2020 03:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.88931 * 2 1 4 4 C 1.54215 * 110.98079 * 236.16713 * 2 1 3 5 5 C 1.52109 * 104.84131 * 215.40617 * 4 2 1 6 6 S 1.76536 * 139.39802 * 197.43041 * 5 4 2 7 7 C 1.75582 * 91.08044 * 179.97438 * 6 5 4 8 8 C 1.32632 * 109.65312 * 0.02562 * 7 6 5 9 9 C 1.33823 * 110.67826 * 17.42282 * 5 4 2 10 10 C 1.52799 * 109.75275 * 0.05935 * 9 5 4 11 11 O 1.42898 * 110.41166 * 101.38721 * 10 9 5 12 12 C 1.50691 * 110.32766 * 223.55947 * 10 9 5 13 13 H 1.08002 * 120.00259 * 230.42228 * 12 10 9 14 14 C 1.37886 * 119.99933 * 50.42573 * 12 10 9 15 15 N 1.31515 * 119.99743 * 207.77013 * 14 12 10 16 16 Si 1.86796 * 119.99800 * 27.77390 * 14 12 10 17 17 H 1.48501 * 109.47412 * 84.25812 * 16 14 12 18 18 H 1.48508 * 109.46902 * 204.25878 * 16 14 12 19 19 H 1.48497 * 109.47339 * 324.25348 * 16 14 12 20 20 H 1.09002 * 109.47265 * 296.17048 * 1 2 3 21 21 H 1.09000 * 109.46947 * 56.17864 * 1 2 3 22 22 H 1.08997 * 109.46440 * 176.17484 * 1 2 3 23 23 H 1.09000 * 110.36533 * 334.24825 * 4 2 1 24 24 H 1.08992 * 110.36448 * 96.56257 * 4 2 1 25 25 H 1.07998 * 125.17540 * 180.02562 * 7 6 5 26 26 H 1.07998 * 122.18125 * 180.02562 * 8 7 6 27 27 H 0.96706 * 113.99924 * 57.76050 * 11 10 9 28 28 H 0.97005 * 119.99660 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0822 -0.8017 -1.1961 5 6 3.3407 -1.4730 -0.6675 6 16 4.8015 -2.2530 -1.2791 7 6 5.3663 -2.5524 0.3563 8 6 4.4833 -2.0809 1.2264 9 6 3.3483 -1.4758 0.6707 10 6 2.0819 -0.8011 1.1957 11 8 1.1321 -1.7825 1.6163 12 6 2.4165 0.1248 2.3365 13 1 1.8661 0.0606 3.2635 14 6 3.4255 1.0542 2.1968 15 7 4.0902 1.4670 3.2539 16 14 3.8482 1.7268 0.5062 17 1 2.9377 2.8536 0.1799 18 1 5.2530 2.2084 0.5022 19 1 3.6903 0.6532 -0.5074 20 1 -0.3634 0.4532 0.9223 21 1 -0.3633 0.5720 -0.8538 22 1 -0.3632 -1.0254 -0.0686 23 1 1.3587 -1.5512 -1.5168 24 1 2.3271 -0.1324 -2.0207 25 1 6.2919 -3.0454 0.6144 26 1 4.6301 -2.1576 2.2936 27 1 1.4626 -2.3827 2.2987 28 1 4.7997 2.1211 3.1557 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260729509.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:32 Heat of formation + Delta-G solvation = -12.889071 kcal Electronic energy + Delta-G solvation = -14011.953337 eV Core-core repulsion = 11733.649289 eV Total energy + Delta-G solvation = -2278.304047 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.06529 -36.83711 -35.24466 -34.61694 -30.92068 -29.61650 -26.54744 -24.69517 -23.28843 -21.40971 -19.77060 -18.86412 -18.06018 -17.40962 -16.33742 -15.68779 -15.23567 -15.06336 -14.60781 -14.31738 -14.15164 -13.44885 -13.07794 -12.96937 -12.78214 -12.69004 -12.37030 -12.01616 -11.90925 -11.85803 -11.46083 -11.11388 -10.70761 -10.19948 -9.28733 -9.08868 -8.45325 -6.35087 0.19179 0.69160 1.14136 1.27755 1.38008 1.43039 1.91483 2.32872 2.88515 3.61128 3.83622 3.99645 4.19593 4.24967 4.60119 4.65194 4.73423 4.89067 4.91698 5.03040 5.25328 5.28505 5.34555 5.53520 5.57061 5.64397 5.76744 6.24074 6.57355 7.03802 7.36974 8.69422 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.023585 B = 0.017515 C = 0.014350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.895436 B = 1598.237518 C = 1950.700296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.090 4.090 3 H 0.060 0.940 4 C -0.035 4.035 5 C -0.209 4.209 6 S 0.114 5.886 7 C -0.221 4.221 8 C -0.117 4.117 9 C -0.146 4.146 10 C 0.293 3.707 11 O -0.560 6.560 12 C -0.561 4.561 13 H 0.036 0.964 14 C 0.057 3.943 15 N -0.913 5.913 16 Si 0.874 3.126 17 H -0.274 1.274 18 H -0.313 1.313 19 H -0.188 1.188 20 H 0.042 0.958 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.099 0.901 24 H 0.083 0.917 25 H 0.191 0.809 26 H 0.122 0.878 27 H 0.374 0.626 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 -6.849 -10.733 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.110 4.110 3 H 0.078 0.922 4 C -0.074 4.074 5 C -0.326 4.326 6 S 0.378 5.622 7 C -0.355 4.355 8 C -0.147 4.147 9 C -0.159 4.159 10 C 0.250 3.750 11 O -0.365 6.365 12 C -0.598 4.598 13 H 0.054 0.946 14 C -0.145 4.145 15 N -0.550 5.550 16 Si 0.700 3.300 17 H -0.201 1.201 18 H -0.242 1.242 19 H -0.110 1.110 20 H 0.061 0.939 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.117 0.883 24 H 0.101 0.899 25 H 0.208 0.792 26 H 0.140 0.860 27 H 0.221 0.779 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.040 -6.795 -12.541 14.264 hybrid contribution 0.472 0.939 2.133 2.378 sum 0.512 -5.856 -10.408 11.954 Atomic orbital electron populations 1.21382 0.92351 1.02342 1.01217 1.22195 0.98131 0.97112 0.93559 0.92223 1.20997 0.90991 0.97973 0.97470 1.26008 1.01339 1.06959 0.98250 1.83311 1.13565 1.57757 1.07552 1.25526 1.05164 1.09900 0.94930 1.19806 0.94012 0.99927 1.00981 1.21635 0.98995 1.00967 0.94259 1.18382 0.80908 0.84527 0.91204 1.86274 1.42177 1.47479 1.60615 1.21519 1.18315 1.19836 1.00129 0.94561 1.25407 0.93737 0.96192 0.99191 1.70224 1.20695 1.31309 1.32743 0.87207 0.75452 0.81643 0.85662 1.20078 1.24221 1.10994 0.93903 0.91112 0.91553 0.88321 0.89881 0.79236 0.85983 0.77936 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 8.61 71.98 0.62 -3.42 15 2 C -0.09 -3.65 2.36 -9.99 -0.02 -3.67 15 3 H 0.06 2.61 3.42 -2.39 -0.01 2.60 15 4 C -0.03 -1.20 5.57 30.71 0.17 -1.03 15 5 C -0.21 -7.84 5.68 25.13 0.14 -7.69 15 6 S 0.11 3.56 23.35 -56.49 -1.32 2.25 15 7 C -0.22 -7.26 11.18 66.66 0.75 -6.51 15 8 C -0.12 -4.71 10.17 21.56 0.22 -4.50 15 9 C -0.15 -6.24 3.70 -19.73 -0.07 -6.31 15 10 C 0.29 13.40 0.91 -11.22 -0.01 13.39 15 11 O -0.56 -23.91 11.55 -148.98 -1.72 -25.63 15 12 C -0.56 -31.42 9.04 25.60 0.23 -31.19 15 13 H 0.04 2.28 8.06 -2.91 -0.02 2.25 15 14 C 0.06 3.26 5.15 84.66 0.44 3.70 15 15 N -0.91 -55.97 13.96 21.45 0.30 -55.67 15 16 Si 0.87 42.31 23.85 68.60 1.64 43.94 15 17 H -0.27 -12.98 7.11 99.48 0.71 -12.27 15 18 H -0.31 -15.78 7.11 99.48 0.71 -15.07 15 19 H -0.19 -8.09 2.91 99.48 0.29 -7.80 15 20 H 0.04 1.63 8.14 -2.39 -0.02 1.61 15 21 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.07 2.20 7.41 -2.39 -0.02 2.18 15 23 H 0.10 2.96 7.84 -2.39 -0.02 2.94 15 24 H 0.08 2.49 8.03 -2.39 -0.02 2.47 15 25 H 0.19 4.84 8.06 -2.91 -0.02 4.82 15 26 H 0.12 5.14 8.06 -2.91 -0.02 5.12 15 27 H 0.37 14.35 9.07 -74.05 -0.67 13.68 15 28 H 0.26 15.41 8.31 -92.70 -0.77 14.64 15 Total: -1.00 -64.62 236.71 1.44 -63.18 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.09 Total: 19.15 kcal Atomic # 6 Polarization: -49.68 SS G_CDS: 2.46 Total: -47.22 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.30 Total: -55.67 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -1.72 Total: -25.63 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.64 Total: 43.94 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.32 Total: 2.25 kcal Total: -64.62 1.44 -63.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260729509.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.290 kcal (2) G-P(sol) polarization free energy of solvation -64.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds