Wall clock time and date at job start Mon Mar 30 2020 03:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 S 1.75871 * 125.19141 * 269.69479 * 10 9 7 12 12 C 1.75869 * 91.01748 * 179.97438 * 11 10 9 13 13 C 1.50710 * 125.17109 * 180.09329 * 12 11 10 14 14 C 1.53003 * 117.49392 * 8.99754 * 13 12 11 15 15 C 1.53007 * 117.49283 * 300.34376 * 13 12 11 16 16 C 1.33429 * 109.65903 * 0.31130 * 12 11 10 17 17 C 1.33626 * 125.19874 * 89.99847 * 10 9 7 18 18 O 1.36234 * 122.58686 * 359.95760 * 17 10 9 19 19 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 20 20 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 21 21 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 22 22 H 1.08995 * 115.54823 * 154.67223 * 13 12 11 23 23 H 1.08994 * 117.50277 * 0.02562 * 14 13 12 24 24 H 1.09004 * 117.49306 * 145.02291 * 14 13 12 25 25 H 1.09001 * 117.49064 * 214.97724 * 15 13 12 26 26 H 1.08996 * 117.50571 * 359.97320 * 15 13 12 27 27 H 1.08003 * 122.55496 * 179.77635 * 16 12 11 28 28 H 0.96692 * 113.99926 * 89.99452 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 16 2.8776 -4.4169 -1.4535 12 6 3.8314 -5.5211 -0.4717 13 6 4.7454 -6.5921 -1.0092 14 6 5.0184 -6.5976 -2.5147 15 6 4.1225 -7.6731 -1.8950 16 6 3.6192 -5.2696 0.8214 17 6 2.7349 -4.2325 1.0766 18 8 2.4057 -3.8433 2.3400 19 1 -0.4849 0.8401 0.0041 20 1 0.6280 -2.5591 0.8866 21 1 0.6206 -2.5548 -0.8933 22 1 5.5597 -6.8900 -0.3488 23 1 4.5373 -5.8265 -3.1162 24 1 6.0124 -6.8996 -2.8447 25 1 4.5275 -8.6821 -1.8176 26 1 3.0517 -7.6099 -2.0887 27 1 4.1001 -5.8306 1.6091 28 1 1.6388 -4.3044 2.7063 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260982537.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:00 Heat of formation + Delta-G solvation = 2.147875 kcal Electronic energy + Delta-G solvation = -12698.480934 eV Core-core repulsion = 10420.828937 eV Total energy + Delta-G solvation = -2277.651996 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.66377 -37.24233 -34.29764 -33.22711 -30.42063 -26.63551 -24.07938 -22.42667 -21.87058 -21.18723 -18.90107 -16.53022 -16.41951 -16.23635 -15.58846 -14.48206 -14.37352 -13.83051 -13.05005 -12.50486 -12.37915 -12.05635 -11.70852 -11.55432 -11.18452 -10.84782 -10.72097 -10.47496 -10.42702 -10.22368 -9.88461 -9.64753 -9.41135 -8.42811 -7.82600 -7.50402 -6.04918 -4.08031 1.57700 2.15491 2.62705 3.13073 3.31055 3.38239 3.45012 3.96253 4.45336 4.57894 4.86960 5.01149 5.17897 5.30681 5.50177 5.59038 5.74891 5.83077 6.05062 6.08102 6.31409 6.48766 6.86184 6.95358 7.42749 7.56006 7.90246 8.24888 8.34768 8.94795 9.55167 11.04928 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.039897 B = 0.007360 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.633308 B = 3803.497391 C = 4079.823491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.505 4.505 8 H 0.058 0.942 9 C 0.084 3.916 10 C -0.133 4.133 11 S 0.104 5.896 12 C -0.180 4.180 13 C -0.075 4.075 14 C -0.178 4.178 15 C -0.173 4.173 16 C -0.138 4.138 17 C 0.041 3.959 18 O -0.473 6.473 19 H 0.262 0.738 20 H 0.042 0.958 21 H 0.030 0.970 22 H 0.116 0.884 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.133 0.867 28 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.247 -13.166 -2.098 14.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.045 3.955 10 C -0.251 4.251 11 S 0.367 5.633 12 C -0.297 4.297 13 C -0.095 4.095 14 C -0.216 4.216 15 C -0.211 4.211 16 C -0.169 4.169 17 C -0.013 4.013 18 O -0.280 6.280 19 H 0.071 0.929 20 H 0.060 0.940 21 H 0.048 0.952 22 H 0.134 0.866 23 H 0.116 0.884 24 H 0.117 0.883 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.150 0.850 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.388 -12.445 -3.693 14.468 hybrid contribution 0.247 0.479 1.707 1.790 sum 6.635 -11.966 -1.986 13.826 Atomic orbital electron populations 1.69959 1.06004 1.26796 1.50726 1.24986 0.94928 0.99273 0.95100 0.86429 0.80194 0.83234 0.77599 1.19611 1.20919 1.20856 1.21049 0.93131 0.89443 1.50755 0.92357 1.17881 0.91356 0.87777 0.98475 1.25664 1.03424 1.02256 0.93725 1.84008 1.41596 1.27697 1.09953 1.23263 1.06536 1.03356 0.96509 1.20316 0.99434 0.96575 0.93139 1.23065 1.01250 1.02210 0.95063 1.23088 0.99769 0.94434 1.03769 1.19995 1.01687 0.99305 0.95938 1.16987 1.01307 0.97918 0.85067 1.85025 1.51375 1.65533 1.26020 0.92851 0.93980 0.95202 0.86630 0.88436 0.88311 0.88511 0.88467 0.84964 0.77556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.29 55.43 0.74 -25.96 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 15 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 7 C -0.50 -14.63 9.09 -34.44 -0.31 -14.94 15 8 H 0.06 1.72 7.74 -52.49 -0.41 1.31 15 9 C 0.08 2.21 5.31 -29.04 -0.15 2.06 15 10 C -0.13 -2.99 5.71 -35.93 -0.20 -3.20 15 11 S 0.10 1.96 22.14 -107.50 -2.38 -0.42 15 12 C -0.18 -2.99 6.14 -35.99 -0.22 -3.22 15 13 C -0.07 -0.97 6.21 -91.76 -0.57 -1.54 15 14 C -0.18 -2.04 10.05 -26.69 -0.27 -2.31 15 15 C -0.17 -1.89 10.24 -26.69 -0.27 -2.17 15 16 C -0.14 -2.44 10.04 -41.11 -0.41 -2.85 15 17 C 0.04 0.85 6.69 -41.04 -0.27 0.58 15 18 O -0.47 -9.55 13.23 -20.49 -0.27 -9.82 15 19 H 0.26 7.33 8.31 -40.82 -0.34 7.00 15 20 H 0.04 1.16 7.96 -51.93 -0.41 0.75 15 21 H 0.03 0.82 8.14 -51.93 -0.42 0.39 15 22 H 0.12 1.31 8.14 -51.93 -0.42 0.89 15 23 H 0.10 1.21 7.27 -51.93 -0.38 0.84 15 24 H 0.10 0.93 8.14 -51.93 -0.42 0.51 15 25 H 0.10 0.85 8.14 -51.93 -0.42 0.43 15 26 H 0.10 1.12 8.14 -51.93 -0.42 0.70 15 27 H 0.13 2.02 8.06 -52.48 -0.42 1.60 15 28 H 0.37 5.60 9.07 45.56 0.41 6.01 15 LS Contribution 263.57 15.07 3.97 3.97 Total: -1.00 -31.62 263.57 -8.21 -39.83 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -2.46 Total: 1.29 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -2.79 Total: -25.99 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.27 Total: -9.82 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.38 Total: -0.42 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.62 -8.21 -39.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260982537.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.980 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds