Wall clock time and date at job start Mon Mar 30 2020 03:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 S 1.75871 * 125.19141 * 269.69479 * 10 9 7 12 12 C 1.75869 * 91.01748 * 179.97438 * 11 10 9 13 13 C 1.50710 * 125.17109 * 180.09329 * 12 11 10 14 14 C 1.53003 * 117.49392 * 8.99754 * 13 12 11 15 15 C 1.53007 * 117.49283 * 300.34376 * 13 12 11 16 16 C 1.33429 * 109.65903 * 0.31130 * 12 11 10 17 17 C 1.33626 * 125.19874 * 89.99847 * 10 9 7 18 18 O 1.36234 * 122.58686 * 359.95760 * 17 10 9 19 19 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 20 20 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 21 21 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 22 22 H 1.08995 * 115.54823 * 154.67223 * 13 12 11 23 23 H 1.08994 * 117.50277 * 0.02562 * 14 13 12 24 24 H 1.09004 * 117.49306 * 145.02291 * 14 13 12 25 25 H 1.09001 * 117.49064 * 214.97724 * 15 13 12 26 26 H 1.08996 * 117.50571 * 359.97320 * 15 13 12 27 27 H 1.08003 * 122.55496 * 179.77635 * 16 12 11 28 28 H 0.96692 * 113.99926 * 89.99452 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 16 2.8776 -4.4169 -1.4535 12 6 3.8314 -5.5211 -0.4717 13 6 4.7454 -6.5921 -1.0092 14 6 5.0184 -6.5976 -2.5147 15 6 4.1225 -7.6731 -1.8950 16 6 3.6192 -5.2696 0.8214 17 6 2.7349 -4.2325 1.0766 18 8 2.4057 -3.8433 2.3400 19 1 -0.4849 0.8401 0.0041 20 1 0.6280 -2.5591 0.8866 21 1 0.6206 -2.5548 -0.8933 22 1 5.5597 -6.8900 -0.3488 23 1 4.5373 -5.8265 -3.1162 24 1 6.0124 -6.8996 -2.8447 25 1 4.5275 -8.6821 -1.8176 26 1 3.0517 -7.6099 -2.0887 27 1 4.1001 -5.8306 1.6091 28 1 1.6388 -4.3044 2.7063 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260982537.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:00 Heat of formation + Delta-G solvation = -18.254359 kcal Electronic energy + Delta-G solvation = -12699.365641 eV Core-core repulsion = 10420.828937 eV Total energy + Delta-G solvation = -2278.536704 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.16133 -38.32596 -35.88406 -35.23696 -32.31314 -28.38517 -25.83785 -23.66448 -23.23558 -22.43827 -20.32492 -18.60784 -17.96846 -17.89841 -16.84972 -16.34146 -15.73501 -15.04458 -14.65627 -14.38874 -14.19917 -13.40055 -13.27227 -13.02130 -12.71317 -12.55080 -12.38949 -12.04219 -11.79775 -11.67502 -11.55311 -11.26168 -11.12305 -10.64027 -9.31101 -9.06570 -8.24032 -6.37544 0.08758 0.67313 1.12364 1.36090 1.36854 1.50453 1.66230 2.38150 3.02172 3.06062 3.39572 3.91721 3.93036 4.12147 4.23504 4.40137 4.68838 4.78604 4.99227 5.00565 5.13509 5.21099 5.25164 5.26510 5.41268 5.61342 5.70114 6.09240 6.70956 6.91688 7.30141 8.84629 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.039897 B = 0.007360 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.633308 B = 3803.497391 C = 4079.823491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.046 0.954 9 C 0.098 3.902 10 C -0.196 4.196 11 S 0.111 5.889 12 C -0.147 4.147 13 C -0.096 4.096 14 C -0.176 4.176 15 C -0.157 4.157 16 C -0.157 4.157 17 C 0.055 3.945 18 O -0.492 6.492 19 H 0.267 0.733 20 H 0.015 0.985 21 H 0.005 0.995 22 H 0.141 0.859 23 H 0.082 0.918 24 H 0.125 0.875 25 H 0.127 0.873 26 H 0.087 0.913 27 H 0.163 0.837 28 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.355 -14.538 -2.378 16.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.065 0.935 9 C 0.059 3.941 10 C -0.314 4.314 11 S 0.374 5.626 12 C -0.264 4.264 13 C -0.116 4.116 14 C -0.213 4.213 15 C -0.194 4.194 16 C -0.187 4.187 17 C 0.000 4.000 18 O -0.303 6.303 19 H 0.076 0.924 20 H 0.033 0.967 21 H 0.023 0.977 22 H 0.159 0.841 23 H 0.101 0.899 24 H 0.144 0.856 25 H 0.145 0.855 26 H 0.106 0.894 27 H 0.180 0.820 28 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 8.474 -13.825 -3.970 16.694 hybrid contribution -0.390 0.779 1.787 1.988 sum 8.084 -13.045 -2.183 15.502 Atomic orbital electron populations 1.70064 1.07468 1.28022 1.51166 1.25887 0.95863 1.02975 0.94418 0.85382 0.78747 0.78645 0.78211 1.19346 1.19643 1.19924 1.21310 0.92752 0.91218 1.51166 0.93523 1.17435 0.91593 0.89071 0.95974 1.25307 1.05897 1.03674 0.96481 1.83836 1.41997 1.28035 1.08767 1.23825 1.04583 1.02252 0.95770 1.20566 0.99997 0.96547 0.94534 1.23178 1.02744 1.02030 0.93386 1.23193 0.99393 0.95416 1.01411 1.20125 1.02048 0.99323 0.97243 1.17368 1.00549 0.97551 0.84554 1.84914 1.52653 1.66662 1.26036 0.92391 0.96651 0.97687 0.84124 0.89933 0.85638 0.85464 0.89421 0.81995 0.75043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.45 15 2 C 0.01 0.41 5.46 84.66 0.46 0.87 15 3 Si 0.97 45.86 29.54 68.60 2.03 47.89 15 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 15 5 H -0.27 -12.28 7.11 99.48 0.71 -11.58 15 6 H -0.27 -12.55 7.11 99.48 0.71 -11.84 15 7 C -0.53 -31.59 9.09 25.60 0.23 -31.36 15 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 15 9 C 0.10 5.46 5.31 29.10 0.15 5.61 15 10 C -0.20 -9.12 5.71 24.64 0.14 -8.98 15 11 S 0.11 4.16 22.14 -56.49 -1.25 2.91 15 12 C -0.15 -4.60 6.14 24.60 0.15 -4.45 15 13 C -0.10 -2.13 6.21 -11.53 -0.07 -2.20 15 14 C -0.18 -3.40 10.05 30.62 0.31 -3.09 15 15 C -0.16 -2.81 10.24 30.62 0.31 -2.50 15 16 C -0.16 -5.29 10.04 21.28 0.21 -5.07 15 17 C 0.05 2.28 6.69 21.32 0.14 2.43 15 18 O -0.49 -20.08 13.23 -96.23 -1.27 -21.35 15 19 H 0.27 15.21 8.31 -92.71 -0.77 14.44 15 20 H 0.02 0.91 7.96 -2.38 -0.02 0.89 15 21 H 0.00 0.29 8.14 -2.39 -0.02 0.27 15 22 H 0.14 2.51 8.14 -2.39 -0.02 2.49 15 23 H 0.08 1.87 7.27 -2.39 -0.02 1.85 15 24 H 0.13 1.78 8.14 -2.38 -0.02 1.77 15 25 H 0.13 1.57 8.14 -2.39 -0.02 1.55 15 26 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15 27 H 0.16 4.44 8.06 -2.91 -0.02 4.42 15 28 H 0.39 11.98 9.07 -74.06 -0.67 11.30 15 Total: -1.00 -69.81 263.57 2.33 -67.48 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 0.50 Total: 8.27 kcal Atomic # 6 Polarization: -50.79 SS G_CDS: 2.05 Total: -48.75 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.28 Total: -56.45 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -1.27 Total: -21.35 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.25 Total: 2.91 kcal Total: -69.81 2.33 -67.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260982537.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.225 kcal (2) G-P(sol) polarization free energy of solvation -69.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds