Wall clock time and date at job start Mon Mar 30 2020 03:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99868 * 2 1 4 4 H 1.48500 * 109.46993 * 269.99800 * 3 2 1 5 5 H 1.48493 * 109.47087 * 30.00169 * 3 2 1 6 6 H 1.48507 * 109.46851 * 150.00287 * 3 2 1 7 7 C 1.37881 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00178 * 186.19129 * 7 2 1 9 9 C 1.50704 * 119.99542 * 6.18556 * 7 2 1 10 10 O 1.42896 * 109.72972 * 305.51564 * 9 7 2 11 11 C 1.53167 * 109.59601 * 65.91748 * 9 7 2 12 12 C 1.53160 * 108.95678 * 169.45103 * 11 9 7 13 13 C 1.52995 * 109.29514 * 289.43067 * 12 11 9 14 14 C 1.52265 * 108.79747 * 51.18659 * 13 12 11 15 15 C 1.39210 * 123.50711 * 162.54014 * 14 13 12 16 16 C 1.32908 * 115.70851 * 179.97438 * 15 14 13 17 17 S 1.75732 * 109.58176 * 0.02562 * 16 15 14 18 18 C 1.34634 * 122.83380 * 342.50285 * 14 13 12 19 19 H 0.96999 * 119.99865 * 359.97438 * 1 2 3 20 20 H 0.96689 * 114.00568 * 299.60830 * 10 9 7 21 21 H 1.09001 * 109.55547 * 289.29189 * 11 9 7 22 22 H 1.09002 * 109.55878 * 49.61209 * 11 9 7 23 23 H 1.09006 * 109.49717 * 49.39613 * 12 11 9 24 24 H 1.08995 * 109.49677 * 169.48948 * 12 11 9 25 25 H 1.08997 * 109.61855 * 291.36927 * 13 12 11 26 26 H 1.09007 * 109.54618 * 170.96388 * 13 12 11 27 27 H 1.08002 * 122.14688 * 359.69307 * 15 14 13 28 28 H 1.07996 * 125.21268 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0798 -1.1968 0.1003 9 6 1.2576 -2.4953 -0.1417 10 8 0.2416 -2.5794 0.8596 11 6 0.6175 -2.5720 -1.5311 12 6 0.0913 -3.9922 -1.7588 13 6 1.2737 -4.9478 -1.9310 14 6 2.2398 -4.7469 -0.7714 15 6 3.2227 -5.6686 -0.4215 16 6 3.9816 -5.3357 0.6176 17 16 3.4752 -3.7721 1.2398 18 6 2.2208 -3.6532 0.0135 19 1 -0.4850 0.8400 0.0004 20 1 0.5786 -2.5492 1.7653 21 1 -0.2081 -1.8629 -1.5921 22 1 1.3627 -2.3330 -2.2899 23 1 -0.5048 -4.3014 -0.9001 24 1 -0.5261 -4.0119 -2.6568 25 1 1.7822 -4.7351 -2.8713 26 1 0.9137 -5.9768 -1.9327 27 1 3.3568 -6.5968 -0.9570 28 1 4.7863 -5.9343 1.0182 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260989444.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:00 Heat of formation + Delta-G solvation = -45.607345 kcal Electronic energy + Delta-G solvation = -13669.912083 eV Core-core repulsion = 11390.189265 eV Total energy + Delta-G solvation = -2279.722818 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.12733 -37.34431 -34.73217 -34.23023 -30.67192 -29.53495 -27.03769 -24.24444 -23.18346 -21.42207 -19.46601 -18.45282 -18.19682 -16.66518 -16.14364 -15.60512 -15.20347 -15.04468 -14.59571 -14.13257 -13.79793 -13.30424 -13.12718 -12.86862 -12.71565 -12.62331 -12.23827 -12.06491 -11.72293 -11.64489 -11.48433 -10.77309 -10.54720 -10.19650 -9.34324 -9.05477 -8.07313 -6.32732 0.31930 0.97249 1.37589 1.40141 1.41217 1.49292 1.95096 2.39855 3.14177 4.01318 4.07447 4.21153 4.33125 4.44886 4.54575 4.78065 4.89333 4.97309 5.08183 5.09746 5.26523 5.49213 5.54471 5.67817 5.69871 5.81463 5.94714 6.18244 6.70895 7.31725 7.52468 8.91830 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.031176 B = 0.012176 C = 0.009914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.901862 B = 2298.965410 C = 2823.575079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.040 3.960 3 Si 0.944 3.056 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.576 4.576 8 H 0.051 0.949 9 C 0.310 3.690 10 O -0.558 6.558 11 C -0.081 4.081 12 C -0.115 4.115 13 C -0.046 4.046 14 C -0.135 4.135 15 C -0.132 4.132 16 C -0.229 4.229 17 S 0.066 5.934 18 C -0.189 4.189 19 H 0.259 0.741 20 H 0.350 0.650 21 H 0.051 0.949 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.162 0.838 28 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 -9.460 -1.533 10.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.614 4.614 8 H 0.069 0.931 9 C 0.269 3.731 10 O -0.362 6.362 11 C -0.121 4.121 12 C -0.153 4.153 13 C -0.085 4.085 14 C -0.147 4.147 15 C -0.162 4.162 16 C -0.364 4.364 17 S 0.332 5.668 18 C -0.306 4.306 19 H 0.069 0.931 20 H 0.194 0.806 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.180 0.820 28 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.005 -8.475 -0.839 9.879 hybrid contribution 0.279 0.462 -0.453 0.705 sum 5.285 -8.013 -1.293 9.685 Atomic orbital electron populations 1.70239 1.06877 1.26829 1.47388 1.25659 0.95420 1.01778 0.93573 0.85798 0.78932 0.79976 0.78371 1.19975 1.20737 1.19545 1.21842 0.93365 0.92139 1.54051 0.93109 1.17380 0.82271 0.86631 0.86833 1.86498 1.36870 1.96304 1.16487 1.21296 0.99387 0.96279 0.95134 1.21561 0.97655 0.94931 1.01135 1.20531 0.93318 1.00041 0.94581 1.20111 1.00268 0.94027 1.00258 1.20233 0.95939 1.01337 0.98735 1.25714 1.07225 1.00191 1.03268 1.84149 1.30678 1.17482 1.34455 1.26251 1.02312 1.01617 1.00439 0.93137 0.80593 0.93067 0.93395 0.93379 0.90731 0.90064 0.88850 0.82014 0.79358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.37 11.36 21.45 0.24 -50.12 15 2 C 0.04 2.18 5.25 84.66 0.44 2.62 15 3 Si 0.94 43.33 29.54 68.60 2.03 45.35 15 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 15 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 7 C -0.58 -31.44 7.88 25.60 0.20 -31.24 15 8 H 0.05 2.80 7.36 -2.91 -0.02 2.78 15 9 C 0.31 15.56 0.66 -12.00 -0.01 15.55 15 10 O -0.56 -29.48 11.50 -148.98 -1.71 -31.20 15 11 C -0.08 -3.89 4.66 30.70 0.14 -3.75 15 12 C -0.12 -4.40 5.87 30.65 0.18 -4.22 15 13 C -0.05 -1.46 6.15 30.35 0.19 -1.28 15 14 C -0.13 -4.99 5.78 -19.95 -0.12 -5.11 15 15 C -0.13 -4.02 10.00 21.33 0.21 -3.81 15 16 C -0.23 -6.86 11.20 66.65 0.75 -6.11 15 17 S 0.07 2.52 22.53 -56.49 -1.27 1.25 15 18 C -0.19 -8.21 5.42 25.09 0.14 -8.08 15 19 H 0.26 14.22 8.31 -92.71 -0.77 13.45 15 20 H 0.35 17.34 9.04 -74.06 -0.67 16.67 15 21 H 0.05 2.74 7.10 -2.39 -0.02 2.73 15 22 H 0.05 2.27 8.07 -2.39 -0.02 2.25 15 23 H 0.05 1.98 7.74 -2.38 -0.02 1.96 15 24 H 0.07 2.44 8.14 -2.39 -0.02 2.42 15 25 H 0.08 2.38 8.14 -2.39 -0.02 2.36 15 26 H 0.09 2.43 8.14 -2.38 -0.02 2.41 15 27 H 0.16 3.70 8.06 -2.91 -0.02 3.68 15 28 H 0.19 4.16 8.06 -2.91 -0.02 4.14 15 Total: -1.00 -62.29 247.27 1.91 -60.37 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.50 Total: 19.76 kcal Atomic # 6 Polarization: -47.54 SS G_CDS: 2.13 Total: -45.41 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.24 Total: -50.12 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -1.71 Total: -31.20 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -1.27 Total: 1.25 kcal Total: -62.29 1.91 -60.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260989444.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.767 kcal (2) G-P(sol) polarization free energy of solvation -62.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds