Wall clock time and date at job start Mon Mar 30 2020 03:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 110.89303 * 2 1 4 4 C 1.54131 * 110.98269 * 236.17962 * 2 1 3 5 5 C 1.52790 * 105.05303 * 215.30599 * 4 2 1 6 6 C 1.40124 * 136.53868 * 197.50961 * 5 4 2 7 7 C 1.32630 * 115.63299 * 180.12989 * 6 5 4 8 8 S 1.75583 * 109.65047 * 359.97438 * 7 6 5 9 9 C 1.33824 * 109.75479 * 17.57262 * 5 4 2 10 10 C 1.52115 * 110.67467 * 359.89732 * 9 5 4 11 11 O 1.42905 * 110.36356 * 101.46160 * 10 9 5 12 12 C 1.50697 * 110.36650 * 223.67202 * 10 9 5 13 13 H 1.07996 * 120.00184 * 117.06671 * 12 10 9 14 14 C 1.37882 * 119.99931 * 297.07030 * 12 10 9 15 15 N 1.31522 * 119.99686 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00364 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47126 * 59.99383 * 16 14 12 18 18 H 1.48493 * 109.47295 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47075 * 299.99869 * 16 14 12 20 20 H 1.09004 * 109.46846 * 296.17151 * 1 2 3 21 21 H 1.08995 * 109.47001 * 56.16869 * 1 2 3 22 22 H 1.08994 * 109.47395 * 176.17111 * 1 2 3 23 23 H 1.09002 * 110.34119 * 96.39943 * 4 2 1 24 24 H 1.09011 * 110.39286 * 334.23780 * 4 2 1 25 25 H 1.07994 * 122.18258 * 0.10730 * 6 5 4 26 26 H 1.08000 * 125.17011 * 180.02562 * 7 6 5 27 27 H 0.96699 * 113.99962 * 61.45703 * 11 10 9 28 28 H 0.96999 * 119.99507 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0820 -0.8010 -1.1956 5 6 3.3483 -1.4757 -0.6706 6 6 4.4837 -2.0803 -1.2262 7 6 5.3658 -2.5534 -0.3560 8 16 4.8003 -2.2551 1.2793 9 6 3.3404 -1.4734 0.6677 10 6 2.0821 -0.8017 1.1962 11 8 1.1333 -1.7840 1.6169 12 6 2.4207 0.1218 2.3379 13 1 2.2390 1.1825 2.2466 14 6 2.9624 -0.3874 3.4991 15 7 3.1832 -1.6792 3.6104 16 14 3.3814 0.7571 4.9146 17 1 2.1512 1.4544 5.3682 18 1 3.9457 -0.0320 6.0388 19 1 4.3798 1.7590 4.4622 20 1 -0.3633 0.4533 0.9224 21 1 -0.3633 0.5721 -0.8536 22 1 -0.3634 -1.0253 -0.0686 23 1 2.3240 -0.1314 -2.0209 24 1 1.3588 -1.5508 -1.5168 25 1 4.6308 -2.1563 -2.2934 26 1 6.2914 -3.0464 -0.6141 27 1 1.4459 -2.3503 2.3357 28 1 3.5639 -2.0374 4.4275 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260990185.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:39 Heat of formation + Delta-G solvation = -18.053358 kcal Electronic energy + Delta-G solvation = -13781.191459 eV Core-core repulsion = 11502.663472 eV Total energy + Delta-G solvation = -2278.527988 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.79757 -35.32600 -32.96924 -32.18058 -29.02373 -27.30543 -25.01255 -23.33681 -21.31776 -18.98406 -17.47895 -17.16361 -16.39473 -14.93693 -14.28997 -13.69096 -13.53622 -13.10429 -12.76028 -12.34554 -11.79698 -11.59232 -11.41497 -11.19930 -10.97922 -10.71574 -10.50186 -10.37145 -10.20748 -10.03692 -9.50167 -9.28273 -8.62085 -8.33173 -7.48763 -7.17473 -6.28909 -4.38583 2.18833 2.80743 3.20479 3.25797 3.28758 3.44049 3.68679 4.25132 4.99296 5.37931 5.70181 5.86861 5.92400 6.16442 6.21579 6.29349 6.48039 6.50564 6.57558 6.74945 6.97365 7.07232 7.11661 7.36247 7.47054 7.58006 7.70685 8.04015 8.63585 9.28152 9.41977 10.74632 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.025046 B = 0.015560 C = 0.010908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.666484 B = 1799.013020 C = 2566.250328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.074 4.074 3 H 0.078 0.922 4 C -0.043 4.043 5 C -0.189 4.189 6 C -0.115 4.115 7 C -0.294 4.294 8 S 0.186 5.814 9 C -0.131 4.131 10 C 0.316 3.684 11 O -0.574 6.574 12 C -0.528 4.528 13 H 0.065 0.935 14 C 0.069 3.931 15 N -0.891 5.891 16 Si 0.901 3.099 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.275 1.275 20 H 0.056 0.944 21 H 0.035 0.965 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.112 0.888 26 H 0.144 0.856 27 H 0.380 0.620 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.835 -0.120 -4.875 4.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.094 4.094 3 H 0.096 0.904 4 C -0.083 4.083 5 C -0.200 4.200 6 C -0.147 4.147 7 C -0.430 4.430 8 S 0.452 5.548 9 C -0.250 4.250 10 C 0.274 3.726 11 O -0.383 6.383 12 C -0.566 4.566 13 H 0.084 0.916 14 C -0.133 4.133 15 N -0.531 5.531 16 Si 0.728 3.272 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.200 1.200 20 H 0.075 0.925 21 H 0.054 0.946 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.130 0.870 26 H 0.162 0.838 27 H 0.230 0.770 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.168 -0.319 -3.743 3.934 hybrid contribution 0.379 0.531 -0.245 0.697 sum 1.547 0.211 -3.989 4.283 Atomic orbital electron populations 1.21422 0.94655 1.01549 1.00129 1.21777 0.95767 0.98220 0.93658 0.90358 1.20964 0.92693 0.97297 0.97313 1.20464 0.97954 1.06983 0.94584 1.19364 0.94230 1.01888 0.99202 1.25768 1.04703 1.11406 1.01130 1.84509 1.13425 1.55006 1.01838 1.27005 1.01057 1.00338 0.96636 1.17841 0.79628 0.84480 0.90658 1.86177 1.43949 1.50555 1.57593 1.21782 1.41041 0.94685 0.99048 0.91646 1.25044 0.94138 0.95411 0.98667 1.69392 1.44133 1.11491 1.28100 0.86489 0.78886 0.80676 0.81165 1.19954 1.20930 1.20015 0.92469 0.94572 0.92293 0.92725 0.91659 0.87005 0.83784 0.76967 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.62 37.16 0.32 -1.97 15 2 C -0.07 -1.59 3.15 -89.39 -0.28 -1.87 15 3 H 0.08 1.65 7.81 -51.93 -0.41 1.24 15 4 C -0.04 -0.86 6.36 -26.25 -0.17 -1.03 15 5 C -0.19 -4.18 6.54 -104.42 -0.68 -4.86 15 6 C -0.11 -2.31 10.17 -40.77 -0.41 -2.72 15 7 C -0.29 -5.79 11.18 28.83 0.32 -5.47 15 8 S 0.19 4.18 21.23 -107.50 -2.28 1.90 15 9 C -0.13 -3.18 5.78 -35.16 -0.20 -3.39 15 10 C 0.32 7.80 0.75 -91.59 -0.07 7.73 15 11 O -0.57 -14.64 11.54 -35.23 -0.41 -15.05 15 12 C -0.53 -13.89 8.24 -34.44 -0.28 -14.18 15 13 H 0.07 1.71 7.63 -52.49 -0.40 1.31 15 14 C 0.07 1.77 5.21 -17.81 -0.09 1.68 15 15 N -0.89 -22.86 9.12 55.43 0.51 -22.35 15 16 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 15 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 20 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.06 1.15 7.41 -51.93 -0.38 0.76 15 23 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.06 1.25 7.84 -51.92 -0.41 0.84 15 25 H 0.11 1.93 8.06 -52.49 -0.42 1.50 15 26 H 0.14 2.38 8.06 -52.49 -0.42 1.95 15 27 H 0.38 9.96 7.21 45.56 0.33 10.29 15 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 LS Contribution 245.49 15.07 3.70 3.70 Total: -1.00 -26.82 245.49 -7.57 -34.40 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -2.52 Total: 8.12 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -1.55 Total: -26.07 kcal Atomic # 7 Polarization: -22.86 SS G_CDS: 0.51 Total: -22.35 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.41 Total: -15.05 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -2.28 Total: 1.90 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -26.82 -7.57 -34.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990185.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.345 kcal (2) G-P(sol) polarization free energy of solvation -26.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds