Wall clock time and date at job start Mon Mar 30 2020 03:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 110.89303 * 2 1 4 4 C 1.54131 * 110.98269 * 236.17962 * 2 1 3 5 5 C 1.52790 * 105.05303 * 215.30599 * 4 2 1 6 6 C 1.40124 * 136.53868 * 197.50961 * 5 4 2 7 7 C 1.32630 * 115.63299 * 180.12989 * 6 5 4 8 8 S 1.75583 * 109.65047 * 359.97438 * 7 6 5 9 9 C 1.33824 * 109.75479 * 17.57262 * 5 4 2 10 10 C 1.52115 * 110.67467 * 359.89732 * 9 5 4 11 11 O 1.42905 * 110.36356 * 101.46160 * 10 9 5 12 12 C 1.50697 * 110.36650 * 223.67202 * 10 9 5 13 13 H 1.07996 * 120.00184 * 117.06671 * 12 10 9 14 14 C 1.37882 * 119.99931 * 297.07030 * 12 10 9 15 15 N 1.31522 * 119.99686 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00364 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47126 * 59.99383 * 16 14 12 18 18 H 1.48493 * 109.47295 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47075 * 299.99869 * 16 14 12 20 20 H 1.09004 * 109.46846 * 296.17151 * 1 2 3 21 21 H 1.08995 * 109.47001 * 56.16869 * 1 2 3 22 22 H 1.08994 * 109.47395 * 176.17111 * 1 2 3 23 23 H 1.09002 * 110.34119 * 96.39943 * 4 2 1 24 24 H 1.09011 * 110.39286 * 334.23780 * 4 2 1 25 25 H 1.07994 * 122.18258 * 0.10730 * 6 5 4 26 26 H 1.08000 * 125.17011 * 180.02562 * 7 6 5 27 27 H 0.96699 * 113.99962 * 61.45703 * 11 10 9 28 28 H 0.96999 * 119.99507 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0820 -0.8010 -1.1956 5 6 3.3483 -1.4757 -0.6706 6 6 4.4837 -2.0803 -1.2262 7 6 5.3658 -2.5534 -0.3560 8 16 4.8003 -2.2551 1.2793 9 6 3.3404 -1.4734 0.6677 10 6 2.0821 -0.8017 1.1962 11 8 1.1333 -1.7840 1.6169 12 6 2.4207 0.1218 2.3379 13 1 2.2390 1.1825 2.2466 14 6 2.9624 -0.3874 3.4991 15 7 3.1832 -1.6792 3.6104 16 14 3.3814 0.7571 4.9146 17 1 2.1512 1.4544 5.3682 18 1 3.9457 -0.0320 6.0388 19 1 4.3798 1.7590 4.4622 20 1 -0.3633 0.4533 0.9224 21 1 -0.3633 0.5721 -0.8536 22 1 -0.3634 -1.0253 -0.0686 23 1 2.3240 -0.1314 -2.0209 24 1 1.3588 -1.5508 -1.5168 25 1 4.6308 -2.1563 -2.2934 26 1 6.2914 -3.0464 -0.6141 27 1 1.4459 -2.3503 2.3357 28 1 3.5639 -2.0374 4.4275 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260990185.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:39 Heat of formation + Delta-G solvation = -33.947219 kcal Electronic energy + Delta-G solvation = -13781.880669 eV Core-core repulsion = 11502.663472 eV Total energy + Delta-G solvation = -2279.217197 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.49410 -37.07992 -34.69919 -34.13077 -30.62925 -29.13699 -26.69048 -25.07099 -22.97549 -20.67915 -19.20762 -19.01442 -18.12765 -16.84190 -16.04325 -15.33556 -15.20333 -14.84040 -14.45620 -14.00118 -13.49170 -13.33873 -13.15699 -12.86224 -12.71114 -12.40916 -12.28022 -12.27356 -11.79823 -11.64778 -11.17816 -11.05650 -10.51797 -10.24692 -9.17677 -8.88349 -8.21082 -6.37995 0.52962 1.14629 1.39257 1.40645 1.47480 1.78140 2.05886 2.37014 3.03880 3.76261 4.08478 4.21663 4.31675 4.52571 4.72741 4.79858 4.91072 4.94860 4.98265 5.16021 5.35638 5.43454 5.47086 5.65370 5.77624 5.87927 5.88675 6.15585 6.65456 7.30495 7.40701 8.79458 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.025046 B = 0.015560 C = 0.010908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.666484 B = 1799.013020 C = 2566.250328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.078 4.078 3 H 0.075 0.925 4 C -0.039 4.039 5 C -0.186 4.186 6 C -0.124 4.124 7 C -0.272 4.272 8 S 0.140 5.860 9 C -0.176 4.176 10 C 0.301 3.699 11 O -0.581 6.581 12 C -0.556 4.556 13 H 0.055 0.945 14 C 0.035 3.965 15 N -0.898 5.898 16 Si 0.951 3.049 17 H -0.274 1.274 18 H -0.279 1.279 19 H -0.276 1.276 20 H 0.041 0.959 21 H 0.072 0.928 22 H 0.049 0.951 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.149 0.851 26 H 0.181 0.819 27 H 0.371 0.629 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 0.024 -6.459 6.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 H 0.093 0.907 4 C -0.078 4.078 5 C -0.198 4.198 6 C -0.155 4.155 7 C -0.408 4.408 8 S 0.406 5.594 9 C -0.294 4.294 10 C 0.260 3.740 11 O -0.388 6.388 12 C -0.594 4.594 13 H 0.074 0.926 14 C -0.166 4.166 15 N -0.538 5.538 16 Si 0.777 3.223 17 H -0.199 1.199 18 H -0.204 1.204 19 H -0.201 1.201 20 H 0.060 0.940 21 H 0.091 0.909 22 H 0.068 0.932 23 H 0.103 0.897 24 H 0.092 0.908 25 H 0.166 0.834 26 H 0.198 0.802 27 H 0.220 0.780 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.686 -0.174 -5.338 5.601 hybrid contribution 0.246 0.457 0.199 0.556 sum 1.932 0.284 -5.139 5.498 Atomic orbital electron populations 1.21350 0.93149 1.01465 1.00953 1.21832 0.97115 0.97778 0.93091 0.90665 1.20989 0.91807 0.97679 0.97312 1.21011 0.98946 1.05782 0.94049 1.19706 0.93313 1.01317 1.01142 1.26076 1.05648 1.10330 0.98729 1.84475 1.14080 1.55962 1.04905 1.27013 1.01690 1.02947 0.97773 1.18097 0.80226 0.84321 0.91394 1.86161 1.44748 1.50719 1.57203 1.22003 1.42164 0.94615 1.00570 0.92648 1.25614 0.94014 0.96608 1.00330 1.69501 1.43889 1.12186 1.28250 0.85712 0.78463 0.79174 0.78977 1.19891 1.20382 1.20124 0.94021 0.90933 0.93158 0.89688 0.90778 0.83360 0.80213 0.77998 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.12 8.62 71.98 0.62 -3.50 15 2 C -0.08 -3.26 3.15 -10.00 -0.03 -3.30 15 3 H 0.08 3.12 7.81 -2.39 -0.02 3.11 15 4 C -0.04 -1.44 6.36 30.91 0.20 -1.24 15 5 C -0.19 -7.86 6.54 -19.73 -0.13 -7.99 15 6 C -0.12 -4.56 10.17 21.56 0.22 -4.34 15 7 C -0.27 -9.94 11.18 66.66 0.75 -9.20 15 8 S 0.14 6.24 21.23 -56.49 -1.20 5.04 15 9 C -0.18 -8.47 5.78 25.14 0.15 -8.32 15 10 C 0.30 14.97 0.75 -11.42 -0.01 14.97 15 11 O -0.58 -30.21 11.54 -148.98 -1.72 -31.93 15 12 C -0.56 -29.80 8.24 25.60 0.21 -29.59 15 13 H 0.06 2.97 7.63 -2.91 -0.02 2.95 15 14 C 0.03 1.82 5.21 84.65 0.44 2.26 15 15 N -0.90 -46.93 9.12 21.45 0.20 -46.73 15 16 Si 0.95 42.18 29.54 68.60 2.03 44.21 15 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 18 H -0.28 -12.01 7.11 99.48 0.71 -11.31 15 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 15 20 H 0.04 1.62 8.14 -2.38 -0.02 1.60 15 21 H 0.07 2.10 8.14 -2.39 -0.02 2.08 15 22 H 0.05 1.91 7.41 -2.39 -0.02 1.89 15 23 H 0.08 2.63 8.14 -2.39 -0.02 2.62 15 24 H 0.07 2.63 7.84 -2.38 -0.02 2.61 15 25 H 0.15 4.37 8.06 -2.91 -0.02 4.34 15 26 H 0.18 5.18 8.06 -2.91 -0.02 5.15 15 27 H 0.37 20.12 7.21 -74.06 -0.53 19.59 15 28 H 0.27 13.70 8.31 -92.71 -0.77 12.93 15 Total: -1.00 -57.23 245.49 2.35 -54.88 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.63 Total: 24.79 kcal Atomic # 6 Polarization: -52.66 SS G_CDS: 2.41 Total: -50.25 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.20 Total: -46.73 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -1.72 Total: -31.93 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 6.24 SS G_CDS: -1.20 Total: 5.04 kcal Total: -57.23 2.35 -54.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990185.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.936 kcal (2) G-P(sol) polarization free energy of solvation -57.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds