Wall clock time and date at job start Mon Mar 30 2020 02:45:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30890 * 1
3 3 Si 1.86805 * 119.99801 * 2 1
4 4 H 1.48497 * 109.47059 * 270.00001 * 3 2 1
5 5 H 1.48500 * 109.47057 * 30.00350 * 3 2 1
6 6 H 1.48502 * 109.46991 * 150.00138 * 3 2 1
7 7 C 1.39876 * 119.99889 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99711 * 162.70747 * 7 2 1
9 9 C 1.41200 * 120.00229 * 342.70534 * 7 2 1
10 10 C 1.40841 * 120.20065 * 334.83747 * 9 7 2
11 11 C 1.36498 * 119.76238 * 180.13774 * 10 9 7
12 12 F 1.35101 * 119.86233 * 179.97438 * 11 10 9
13 13 C 1.39702 * 120.27650 * 0.02562 * 11 10 9
14 14 C 1.39172 * 120.23258 * 359.88529 * 13 11 10
15 15 C 1.36605 * 120.16068 * 0.11822 * 14 13 11
16 16 C 1.50837 * 120.37199 * 180.24904 * 14 13 11
17 17 O 1.43068 * 109.29454 * 343.94530 * 16 14 13
18 18 C 1.43255 * 113.01189 * 48.62656 * 17 16 14
19 19 O 1.35878 * 119.35515 * 179.76042 * 13 11 10
20 20 H 0.97002 * 119.99671 * 359.97438 * 1 2 3
21 21 H 1.08007 * 120.11615 * 359.86760 * 10 9 7
22 22 H 1.07995 * 120.02206 * 179.97438 * 15 14 13
23 23 H 1.09000 * 109.50063 * 103.89675 * 16 14 13
24 24 H 1.09004 * 109.49792 * 223.96218 * 16 14 13
25 25 H 1.09000 * 109.61887 * 54.09413 * 18 17 16
26 26 H 1.09007 * 109.60753 * 174.61308 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3089 0.0000 0.0000
3 14 2.2429 1.6178 0.0000
4 1 2.4903 2.0465 -1.4001
5 1 1.4403 2.6527 0.7001
6 1 3.5405 1.4402 0.7000
7 6 2.0083 -1.2114 -0.0005
8 1 3.0517 -1.2324 -0.2786
9 6 1.3502 -2.4067 0.3624
10 6 0.2206 -2.3666 1.2028
11 6 -0.4070 -3.5278 1.5503
12 9 -1.4903 -3.4917 2.3567
13 6 0.0669 -4.7536 1.0765
14 6 1.1814 -4.7997 0.2443
15 6 1.8201 -3.6460 -0.1121
16 6 1.6923 -6.1211 -0.2737
17 8 1.1273 -7.1829 0.5011
18 6 -0.2916 -7.0662 0.6604
19 8 -0.5693 -5.8985 1.4382
20 1 -0.4850 0.8401 0.0004
21 1 -0.1450 -1.4207 1.5744
22 1 2.6850 -3.6844 -0.7576
23 1 1.4033 -6.2388 -1.3180
24 1 2.7789 -6.1484 -0.1916
25 1 -0.7634 -6.9749 -0.3180
26 1 -0.6757 -7.9477 1.1739
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261209272.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:45
Heat of formation + Delta-G solvation = -134.244176 kcal
Electronic energy + Delta-G solvation = -15107.539374 eV
Core-core repulsion = 12257.759798 eV
Total energy + Delta-G solvation = -2849.779576 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 224.064 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-49.61841 -41.40199 -38.65562 -37.18389 -35.47217 -32.25924 -31.29243 -28.09851
-26.91001 -25.99502 -22.94952 -22.08259 -19.45774 -19.26204 -18.06303 -17.66597
-17.14047 -16.48301 -16.36772 -16.05390 -15.98546 -14.96615 -14.88949 -14.85829
-14.01085 -13.62795 -13.52052 -13.01208 -12.77176 -12.60001 -12.42433 -11.87691
-11.80177 -11.60400 -11.04988 -10.96744 -9.43185 -9.09763 -8.70864 -6.40562
0.65632 0.67491 1.40390 1.46734 1.56443 2.18188 2.36641 2.61249
2.79094 3.42909 3.54771 3.89457 3.98886 4.31066 4.38413 4.43778
4.68211 4.81963 4.92804 5.10742 5.20887 5.44133 5.56873 5.75196
5.84063 6.02737 6.36967 6.59467 6.78841 6.84352 8.24296
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.044230 B = 0.008574 C = 0.007372
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 632.907682 B = 3265.028670 C = 3797.248600
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.823 5.823
2 C 0.033 3.967
3 Si 0.988 3.012
4 H -0.258 1.258
5 H -0.271 1.271
6 H -0.254 1.254
7 C -0.479 4.479
8 H 0.095 0.905
9 C 0.086 3.914
10 C -0.199 4.199
11 C 0.077 3.923
12 F -0.162 7.162
13 C -0.052 4.052
14 C -0.139 4.139
15 C -0.199 4.199
16 C 0.109 3.891
17 O -0.402 6.402
18 C 0.217 3.783
19 O -0.356 6.356
20 H 0.292 0.708
21 H 0.118 0.882
22 H 0.131 0.869
23 H 0.088 0.912
24 H 0.130 0.870
25 H 0.065 0.935
26 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.566 -5.597 -2.208 6.541
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.448 5.448
2 C -0.183 4.183
3 Si 0.808 3.192
4 H -0.183 1.183
5 H -0.196 1.196
6 H -0.178 1.178
7 C -0.508 4.508
8 H 0.113 0.887
9 C 0.084 3.916
10 C -0.219 4.219
11 C 0.058 3.942
12 F -0.141 7.141
13 C -0.096 4.096
14 C -0.140 4.140
15 C -0.218 4.218
16 C 0.033 3.967
17 O -0.322 6.322
18 C 0.104 3.896
19 O -0.274 6.274
20 H 0.102 0.898
21 H 0.136 0.864
22 H 0.149 0.851
23 H 0.106 0.894
24 H 0.147 0.853
25 H 0.082 0.918
26 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges 2.292 -5.639 -1.971 6.398
hybrid contribution -0.415 1.039 0.025 1.119
sum 1.877 -4.600 -1.945 5.336
Atomic orbital electron populations
1.69891 1.09387 1.31143 1.34412 1.26907 0.95431 1.05078 0.90917
0.85105 0.79081 0.75287 0.79723 1.18271 1.19573 1.17760 1.19845
0.98689 0.91508 1.40738 0.88747 1.17690 0.90811 0.93985 0.89154
1.20884 1.01876 0.95078 1.04111 1.17124 0.87179 0.93100 0.96834
1.91314 1.53436 1.97477 1.71921 1.18152 0.98504 0.84313 1.08615
1.19917 0.95553 0.98035 1.00505 1.20713 1.04220 0.90937 1.05935
1.21679 0.99895 0.80659 0.94437 1.88141 1.23143 1.47095 1.73781
1.24696 0.81125 0.87728 0.96004 1.86047 1.66618 1.17133 1.57622
0.89761 0.86383 0.85088 0.89410 0.85252 0.91764 0.81670
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -42.14 10.97 21.82 0.24 -41.90 15
2 C 0.03 1.56 5.14 85.23 0.44 2.00 15
3 Si 0.99 36.04 29.59 68.60 2.03 38.07 15
4 H -0.26 -8.96 7.11 99.48 0.71 -8.25 15
5 H -0.27 -9.64 7.11 99.48 0.71 -8.93 15
6 H -0.25 -8.99 7.11 99.48 0.71 -8.29 15
7 C -0.48 -24.16 9.04 23.39 0.21 -23.94 15
8 H 0.09 4.40 7.90 -2.91 -0.02 4.37 15
9 C 0.09 4.50 5.57 -21.30 -0.12 4.39 15
10 C -0.20 -10.86 8.60 22.50 0.19 -10.66 15
11 C 0.08 4.08 7.26 22.22 0.16 4.24 15
12 F -0.16 -8.46 17.08 44.97 0.77 -7.69 15
13 C -0.05 -2.48 6.60 22.85 0.15 -2.33 15
14 C -0.14 -5.97 5.78 -19.98 -0.12 -6.09 15
15 C -0.20 -9.01 9.39 22.51 0.21 -8.80 15
16 C 0.11 3.50 6.85 71.28 0.49 3.99 15
17 O -0.40 -13.25 10.97 -126.14 -1.38 -14.63 15
18 C 0.22 6.77 7.94 113.37 0.90 7.67 15
19 O -0.36 -15.41 10.31 -69.34 -0.71 -16.12 15
20 H 0.29 13.50 8.30 -92.71 -0.77 12.73 15
21 H 0.12 6.73 6.19 -2.91 -0.02 6.71 15
22 H 0.13 5.16 8.06 -2.91 -0.02 5.13 15
23 H 0.09 2.40 8.14 -2.39 -0.02 2.38 15
24 H 0.13 3.53 8.14 -2.39 -0.02 3.51 15
25 H 0.06 1.80 8.12 -2.39 -0.02 1.78 15
26 H 0.17 3.76 8.14 -2.38 -0.02 3.74 15
Total: -1.00 -61.59 235.39 4.67 -56.92
By element:
Atomic # 1 Polarization: 13.68 SS G_CDS: 1.21 Total: 14.89 kcal
Atomic # 6 Polarization: -32.06 SS G_CDS: 2.52 Total: -29.54 kcal
Atomic # 7 Polarization: -42.14 SS G_CDS: 0.24 Total: -41.90 kcal
Atomic # 8 Polarization: -28.66 SS G_CDS: -2.10 Total: -30.75 kcal
Atomic # 9 Polarization: -8.46 SS G_CDS: 0.77 Total: -7.69 kcal
Atomic # 14 Polarization: 36.04 SS G_CDS: 2.03 Total: 38.07 kcal
Total: -61.59 4.67 -56.92 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261209272.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -77.323 kcal
(2) G-P(sol) polarization free energy of solvation -61.591 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.913 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.921 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.244 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds