Wall clock time and date at job start Mon Mar 30 2020 02:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35275 * 116.99520 * 2 1 4 4 N 1.32760 * 120.56003 * 359.97438 * 3 2 1 5 5 C 1.32001 * 121.35424 * 180.02562 * 4 3 2 6 6 N 1.31428 * 122.52563 * 359.70271 * 5 4 3 7 7 C 1.33973 * 120.90647 * 0.58877 * 6 5 4 8 8 C 1.41251 * 120.73127 * 179.70725 * 7 6 5 9 9 H 1.08002 * 120.00473 * 179.72739 * 8 7 6 10 10 C 1.40328 * 119.99798 * 359.44647 * 8 7 6 11 11 N 1.30554 * 119.99976 * 0.27825 * 10 8 7 12 12 Si 1.86803 * 120.00016 * 180.27640 * 10 8 7 13 13 H 1.48496 * 109.47187 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47141 * 120.00077 * 12 10 8 15 15 H 1.48506 * 109.46902 * 240.00328 * 12 10 8 16 16 C 1.40716 * 120.55080 * 180.02562 * 3 2 1 17 17 C 1.47047 * 121.11097 * 359.95419 * 16 3 2 18 18 O 1.21551 * 120.00222 * 270.02620 * 17 16 3 19 19 O 1.34830 * 119.99851 * 90.02279 * 17 16 3 20 20 H 1.08998 * 109.47136 * 300.00030 * 1 2 3 21 21 H 1.09003 * 109.47006 * 59.99712 * 1 2 3 22 22 H 1.09003 * 109.46733 * 180.02562 * 1 2 3 23 23 H 1.07999 * 118.73560 * 180.02562 * 5 4 3 24 24 H 0.96996 * 120.00260 * 179.97438 * 11 10 8 25 25 H 0.96705 * 116.99944 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0431 1.2054 0.0000 4 7 1.3308 2.3257 -0.0005 5 6 1.9136 3.5101 -0.0010 6 7 3.2199 3.6549 0.0047 7 6 4.0305 2.5882 -0.0004 8 6 5.4339 2.7482 -0.0004 9 1 6.0765 1.8801 -0.0001 10 6 5.9934 4.0351 -0.0068 11 7 5.2168 5.0845 -0.0073 12 14 7.8494 4.2467 -0.0147 13 1 8.4998 2.9117 -0.0122 14 1 8.2573 4.9943 -1.2312 15 1 8.2666 5.0022 1.1938 16 6 3.4475 1.2926 -0.0005 17 6 4.2839 0.0832 -0.0001 18 8 4.6296 -0.4163 1.0527 19 8 4.6673 -0.4717 -1.1676 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.2932 4.3941 -0.0010 24 1 5.6035 5.9741 -0.0113 25 1 5.2170 -1.2657 -1.1167 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261292370.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:17 Heat of formation + Delta-G solvation = -114.697125 kcal Electronic energy + Delta-G solvation = -15177.981056 eV Core-core repulsion = 12348.969066 eV Total energy + Delta-G solvation = -2829.011990 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.64238 -40.42419 -39.11657 -36.86223 -36.03018 -33.28208 -32.53500 -29.15890 -27.81045 -25.92417 -23.72407 -22.59151 -20.29211 -19.10058 -19.02945 -17.93131 -17.58847 -17.04314 -16.87960 -16.05739 -15.28363 -15.22384 -14.71731 -14.42527 -14.37894 -13.24911 -13.08475 -12.99595 -12.79435 -12.45357 -12.38080 -12.20021 -11.96452 -11.57031 -11.01782 -10.50986 -9.81687 -9.72917 -8.60515 -7.06062 0.39451 0.86586 1.27750 1.38106 1.51582 1.54998 2.11516 2.22250 2.45897 2.66153 3.59935 3.63711 4.00260 4.45044 4.46089 4.59313 4.71348 4.82693 4.88584 4.91734 5.34258 5.60237 5.83246 6.09334 6.41341 6.54482 6.75480 7.14633 7.93535 8.14294 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.032044 B = 0.010870 C = 0.008485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.577943 B = 2575.282793 C = 3299.088766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.329 6.329 3 C 0.393 3.607 4 N -0.662 5.662 5 C 0.327 3.673 6 N -0.547 5.547 7 C 0.280 3.720 8 C -0.416 4.416 9 H 0.086 0.914 10 C 0.026 3.974 11 N -0.716 5.716 12 Si 0.995 3.005 13 H -0.259 1.259 14 H -0.253 1.253 15 H -0.257 1.257 16 C -0.392 4.392 17 C 0.585 3.415 18 O -0.556 6.556 19 O -0.508 6.508 20 H 0.055 0.945 21 H 0.059 0.941 22 H 0.126 0.874 23 H 0.205 0.795 24 H 0.296 0.704 25 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.116 -2.928 -2.347 3.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.235 6.235 3 C 0.210 3.790 4 N -0.402 5.402 5 C 0.037 3.963 6 N -0.269 5.269 7 C 0.156 3.844 8 C -0.447 4.447 9 H 0.105 0.895 10 C -0.201 4.201 11 N -0.335 5.335 12 Si 0.813 3.187 13 H -0.182 1.182 14 H -0.177 1.177 15 H -0.182 1.182 16 C -0.402 4.402 17 C 0.429 3.571 18 O -0.447 6.447 19 O -0.320 6.320 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.144 0.856 23 H 0.221 0.779 24 H 0.107 0.893 25 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -1.707 -1.981 -2.095 3.351 hybrid contribution 1.018 -1.044 0.104 1.462 sum -0.689 -3.025 -1.992 3.687 Atomic orbital electron populations 1.23058 0.75477 1.04454 1.02420 1.86091 1.25043 1.24919 1.87406 1.19687 0.87319 0.85598 0.86422 1.67975 1.40043 0.98515 1.33624 1.25043 0.90204 0.93467 0.87615 1.69322 1.03791 1.31289 1.22522 1.18762 0.94584 0.84239 0.86860 1.20114 0.89952 0.94991 1.39595 0.89545 1.27126 1.06446 0.94206 0.92338 1.70012 1.39732 1.00179 1.23598 0.84966 0.73973 0.79979 0.79815 1.18199 1.17667 1.18159 1.19502 0.90973 0.93796 1.35941 1.20273 0.74891 0.81407 0.80492 1.90739 1.55859 1.63827 1.34282 1.84749 1.66392 1.46027 1.34802 0.92632 0.92226 0.85639 0.77880 0.89256 0.72072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.24 10.41 113.37 1.18 2.42 15 2 O -0.33 -14.05 10.02 -85.60 -0.86 -14.90 15 3 C 0.39 19.28 7.55 85.16 0.64 19.92 15 4 N -0.66 -30.73 9.35 -312.28 -2.92 -33.65 15 5 C 0.33 15.25 12.25 180.93 2.22 17.47 15 6 N -0.55 -29.15 8.03 -192.87 -1.55 -30.70 15 7 C 0.28 15.52 6.61 40.51 0.27 15.78 15 8 C -0.42 -22.05 8.85 23.52 0.21 -21.84 15 9 H 0.09 4.48 6.98 -2.91 -0.02 4.46 15 10 C 0.03 1.24 5.50 85.39 0.47 1.71 15 11 N -0.72 -34.99 11.52 21.89 0.25 -34.74 15 12 Si 0.99 35.16 29.56 68.60 2.03 37.19 15 13 H -0.26 -9.14 7.11 99.48 0.71 -8.44 15 14 H -0.25 -8.30 7.11 99.48 0.71 -7.59 15 15 H -0.26 -8.64 7.11 99.48 0.71 -7.93 15 16 C -0.39 -20.77 5.85 -19.41 -0.11 -20.88 15 17 C 0.58 28.61 6.11 70.13 0.43 29.04 15 18 O -0.56 -28.90 17.90 19.67 0.35 -28.55 15 19 O -0.51 -20.11 13.44 -57.42 -0.77 -20.88 15 20 H 0.05 1.70 8.12 -2.39 -0.02 1.68 15 21 H 0.06 1.78 8.12 -2.39 -0.02 1.76 15 22 H 0.13 2.80 8.14 -2.39 -0.02 2.79 15 23 H 0.20 7.67 8.06 -2.91 -0.02 7.65 15 24 H 0.30 12.59 8.29 -92.71 -0.77 11.82 15 25 H 0.42 11.22 9.11 -74.05 -0.67 10.55 15 Total: -1.00 -68.29 241.08 2.41 -65.88 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.58 Total: 16.73 kcal Atomic # 6 Polarization: 38.32 SS G_CDS: 5.30 Total: 43.62 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -4.22 Total: -99.08 kcal Atomic # 8 Polarization: -63.06 SS G_CDS: -1.28 Total: -64.33 kcal Atomic # 14 Polarization: 35.16 SS G_CDS: 2.03 Total: 37.19 kcal Total: -68.29 2.41 -65.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261292370.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.820 kcal (2) G-P(sol) polarization free energy of solvation -68.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds