Wall clock time and date at job start Mon Mar 30 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20831 * 119.99729 * 2 1 4 4 C 1.47485 * 120.00498 * 179.97438 * 2 1 3 5 5 C 1.39028 * 125.64972 * 359.97438 * 4 2 1 6 6 C 1.38365 * 107.78064 * 180.02562 * 5 4 2 7 7 N 1.48023 * 126.40408 * 179.97438 * 6 5 4 8 8 O 1.31698 * 120.00254 * 0.02562 * 7 6 5 9 9 O 1.31706 * 120.00130 * 180.02562 * 7 6 5 10 10 C 1.40793 * 107.19094 * 359.97438 * 6 5 4 11 11 C 1.39005 * 126.15154 * 179.97438 * 10 6 5 12 12 H 1.07995 * 120.00133 * 359.71960 * 11 10 6 13 13 C 1.46507 * 119.99657 * 180.02562 * 11 10 6 14 14 N 1.29566 * 120.00071 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99964 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47055 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.47016 * 119.99836 * 15 13 11 18 18 H 1.48495 * 109.47483 * 240.00193 * 15 13 11 19 19 N 1.36092 * 125.65578 * 180.28535 * 4 2 1 20 20 H 0.97005 * 125.68053 * 359.97438 * 19 4 2 21 21 H 1.09000 * 109.47147 * 239.99771 * 1 2 3 22 22 H 1.09001 * 109.47933 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46860 * 120.00473 * 1 2 3 24 24 H 1.08004 * 126.11112 * 359.97438 * 5 4 2 25 25 H 0.96996 * 119.99694 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0465 0.0000 4 6 2.2445 -1.2772 0.0006 5 6 1.6714 -2.5438 0.0016 6 6 2.6976 -3.4719 0.0025 7 7 2.5500 -4.9448 0.0042 8 8 1.3495 -5.4864 0.0047 9 8 3.6193 -5.7138 0.0054 10 6 3.9084 -2.7535 0.0013 11 6 5.1864 -3.3003 0.0021 12 1 5.3149 -4.3726 0.0083 13 6 6.3589 -2.4219 0.0012 14 7 6.2047 -1.1355 -0.0008 15 14 8.0764 -3.1567 0.0030 16 1 7.9808 -4.6386 0.0046 17 1 8.8073 -2.7096 -1.2100 18 1 8.8064 -2.7060 1.2150 19 7 3.5988 -1.4112 0.0061 20 1 4.2394 -0.6828 0.0100 21 1 -0.3633 -0.5139 0.8900 22 1 -0.3635 1.0276 -0.0005 23 1 -0.3633 -0.5139 -0.8900 24 1 0.6140 -2.7641 0.0026 25 1 6.9810 -0.5540 -0.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261293892.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:57 Heat of formation + Delta-G solvation = -32.246981 kcal Electronic energy + Delta-G solvation = -14860.040681 eV Core-core repulsion = 12034.603997 eV Total energy + Delta-G solvation = -2825.436684 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.01858 -39.86743 -38.56383 -36.19720 -34.53457 -32.43438 -32.09087 -30.53960 -27.76772 -26.19614 -23.45416 -21.28039 -20.86944 -20.11517 -18.42089 -17.98827 -17.05563 -16.84477 -16.46142 -15.93242 -15.92905 -15.54480 -14.50165 -14.46087 -14.23250 -13.62091 -13.17953 -13.14965 -12.98035 -12.97026 -12.03682 -11.59729 -11.59473 -11.33010 -11.28341 -10.95268 -10.27550 -9.86157 -9.57039 -7.14927 -0.91297 0.38153 1.07418 1.09620 1.28171 1.51927 1.72781 2.04719 2.14389 2.49332 2.56847 3.47056 3.92196 4.15757 4.33059 4.45576 4.56360 4.73009 4.75369 5.09190 5.18290 5.32586 5.55969 5.86681 5.93492 6.22485 6.57041 6.68902 7.01589 7.42195 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.021080 B = 0.011899 C = 0.007637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.929877 B = 2352.544688 C = 3665.329032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.426 3.574 3 O -0.508 6.508 4 C -0.074 4.074 5 C -0.083 4.083 6 C -0.165 4.165 7 N 0.069 4.931 8 O -0.391 6.391 9 O -0.368 6.368 10 C 0.250 3.750 11 C -0.357 4.357 12 H 0.130 0.870 13 C 0.034 3.966 14 N -0.751 5.751 15 Si 1.020 2.980 16 H -0.256 1.256 17 H -0.244 1.244 18 H -0.243 1.243 19 N -0.578 5.578 20 H 0.435 0.565 21 H 0.114 0.886 22 H 0.100 0.900 23 H 0.114 0.886 24 H 0.173 0.827 25 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 7.512 0.006 7.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.308 3.692 3 O -0.388 6.388 4 C -0.183 4.183 5 C -0.111 4.111 6 C -0.278 4.278 7 N 0.465 4.535 8 O -0.524 6.524 9 O -0.507 6.507 10 C 0.135 3.865 11 C -0.392 4.392 12 H 0.148 0.852 13 C -0.195 4.195 14 N -0.376 5.376 15 Si 0.835 3.165 16 H -0.179 1.179 17 H -0.167 1.167 18 H -0.167 1.167 19 N -0.195 5.195 20 H 0.283 0.717 21 H 0.133 0.867 22 H 0.119 0.881 23 H 0.133 0.867 24 H 0.191 0.809 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.317 8.494 0.008 8.595 hybrid contribution 0.677 -0.623 -0.001 0.920 sum 1.994 7.871 0.007 8.119 Atomic orbital electron populations 1.22172 0.88264 1.06391 1.06762 1.22389 0.93394 0.83878 0.69561 1.90390 1.73338 1.34681 1.40349 1.21375 0.84897 0.95793 1.16186 1.20937 0.98948 0.88373 1.02838 1.20173 0.97050 0.76752 1.33802 1.48914 1.00897 1.03313 1.00389 1.96023 1.07602 1.79301 1.69498 1.96013 1.25509 1.61452 1.67757 1.17847 0.92263 0.82588 0.93826 1.21821 0.88093 0.98101 1.31145 0.85239 1.28945 1.07403 0.94179 0.89013 1.68247 1.39573 1.06576 1.23168 0.84556 0.70985 0.80134 0.80842 1.17921 1.16699 1.16687 1.42130 1.06026 1.06104 1.65263 0.71653 0.86723 0.88142 0.86727 0.80912 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.71 9.71 71.23 0.69 -3.01 15 2 C 0.43 14.02 7.26 28.12 0.20 14.23 15 3 O -0.51 -19.60 17.80 -1.66 -0.03 -19.63 15 4 C -0.07 -2.97 7.04 41.11 0.29 -2.68 15 5 C -0.08 -3.51 10.06 22.49 0.23 -3.28 15 6 C -0.16 -8.47 7.31 37.03 0.27 -8.20 15 7 N 0.07 3.97 4.98 -44.90 -0.22 3.75 15 8 O -0.39 -22.95 19.79 3.52 0.07 -22.88 15 9 O -0.37 -22.13 17.58 3.51 0.06 -22.07 15 10 C 0.25 12.32 6.72 39.02 0.26 12.58 15 11 C -0.36 -16.86 9.21 24.61 0.23 -16.63 15 12 H 0.13 6.50 5.92 -2.91 -0.02 6.48 15 13 C 0.03 1.31 5.67 87.18 0.49 1.80 15 14 N -0.75 -28.28 10.80 23.21 0.25 -28.03 15 15 Si 1.02 28.89 29.64 68.60 2.03 30.93 15 16 H -0.26 -7.91 7.11 99.48 0.71 -7.20 15 17 H -0.24 -6.29 7.11 99.48 0.71 -5.58 15 18 H -0.24 -6.28 7.11 99.48 0.71 -5.57 15 19 N -0.58 -25.81 5.77 -175.97 -1.01 -26.83 15 20 H 0.43 19.04 6.30 -92.70 -0.58 18.45 15 21 H 0.11 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.10 1.77 8.12 -2.39 -0.02 1.75 15 23 H 0.11 1.99 8.14 -2.39 -0.02 1.97 15 24 H 0.17 6.10 7.98 -2.91 -0.02 6.08 15 25 H 0.33 10.35 8.27 -92.71 -0.77 9.59 15 Total: -1.00 -66.52 243.52 4.48 -62.04 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.67 Total: 27.93 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 2.67 Total: -5.20 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.99 Total: -51.11 kcal Atomic # 8 Polarization: -64.68 SS G_CDS: 0.10 Total: -64.58 kcal Atomic # 14 Polarization: 28.89 SS G_CDS: 2.03 Total: 30.93 kcal Total: -66.52 4.48 -62.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293892.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.793 kcal (2) G-P(sol) polarization free energy of solvation -66.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds