Wall clock time and date at job start Mon Mar 30 2020 02:55:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 O 1.20831 * 119.99729 * 2 1
4 4 C 1.47485 * 120.00498 * 179.97438 * 2 1 3
5 5 C 1.39028 * 125.64972 * 359.97438 * 4 2 1
6 6 C 1.38365 * 107.78064 * 180.02562 * 5 4 2
7 7 N 1.48023 * 126.40408 * 179.97438 * 6 5 4
8 8 O 1.31698 * 120.00254 * 0.02562 * 7 6 5
9 9 O 1.31706 * 120.00130 * 180.02562 * 7 6 5
10 10 C 1.40793 * 107.19094 * 359.97438 * 6 5 4
11 11 C 1.39005 * 126.15154 * 179.97438 * 10 6 5
12 12 H 1.07995 * 120.00133 * 359.71960 * 11 10 6
13 13 C 1.46507 * 119.99657 * 180.02562 * 11 10 6
14 14 N 1.29566 * 120.00071 * 359.97438 * 13 11 10
15 15 Si 1.86800 * 119.99964 * 179.97438 * 13 11 10
16 16 H 1.48501 * 109.47055 * 0.02562 * 15 13 11
17 17 H 1.48508 * 109.47016 * 119.99836 * 15 13 11
18 18 H 1.48495 * 109.47483 * 240.00193 * 15 13 11
19 19 N 1.36092 * 125.65578 * 180.28535 * 4 2 1
20 20 H 0.97005 * 125.68053 * 359.97438 * 19 4 2
21 21 H 1.09000 * 109.47147 * 239.99771 * 1 2 3
22 22 H 1.09001 * 109.47933 * 0.02562 * 1 2 3
23 23 H 1.09001 * 109.46860 * 120.00473 * 1 2 3
24 24 H 1.08004 * 126.11112 * 359.97438 * 5 4 2
25 25 H 0.96996 * 119.99694 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1111 1.0465 0.0000
4 6 2.2445 -1.2772 0.0006
5 6 1.6714 -2.5438 0.0016
6 6 2.6976 -3.4719 0.0025
7 7 2.5500 -4.9448 0.0042
8 8 1.3495 -5.4864 0.0047
9 8 3.6193 -5.7138 0.0054
10 6 3.9084 -2.7535 0.0013
11 6 5.1864 -3.3003 0.0021
12 1 5.3149 -4.3726 0.0083
13 6 6.3589 -2.4219 0.0012
14 7 6.2047 -1.1355 -0.0008
15 14 8.0764 -3.1567 0.0030
16 1 7.9808 -4.6386 0.0046
17 1 8.8073 -2.7096 -1.2100
18 1 8.8064 -2.7060 1.2150
19 7 3.5988 -1.4112 0.0061
20 1 4.2394 -0.6828 0.0100
21 1 -0.3633 -0.5139 0.8900
22 1 -0.3635 1.0276 -0.0005
23 1 -0.3633 -0.5139 -0.8900
24 1 0.6140 -2.7641 0.0026
25 1 6.9810 -0.5540 -0.0010
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261293892.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:57
Heat of formation + Delta-G solvation = -32.246981 kcal
Electronic energy + Delta-G solvation = -14860.040681 eV
Core-core repulsion = 12034.603997 eV
Total energy + Delta-G solvation = -2825.436684 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 224.063 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-42.01858 -39.86743 -38.56383 -36.19720 -34.53457 -32.43438 -32.09087 -30.53960
-27.76772 -26.19614 -23.45416 -21.28039 -20.86944 -20.11517 -18.42089 -17.98827
-17.05563 -16.84477 -16.46142 -15.93242 -15.92905 -15.54480 -14.50165 -14.46087
-14.23250 -13.62091 -13.17953 -13.14965 -12.98035 -12.97026 -12.03682 -11.59729
-11.59473 -11.33010 -11.28341 -10.95268 -10.27550 -9.86157 -9.57039 -7.14927
-0.91297 0.38153 1.07418 1.09620 1.28171 1.51927 1.72781 2.04719
2.14389 2.49332 2.56847 3.47056 3.92196 4.15757 4.33059 4.45576
4.56360 4.73009 4.75369 5.09190 5.18290 5.32586 5.55969 5.86681
5.93492 6.22485 6.57041 6.68902 7.01589 7.42195
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.021080 B = 0.011899 C = 0.007637
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1327.929877 B = 2352.544688 C = 3665.329032
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.426 3.574
3 O -0.508 6.508
4 C -0.074 4.074
5 C -0.083 4.083
6 C -0.165 4.165
7 N 0.069 4.931
8 O -0.391 6.391
9 O -0.368 6.368
10 C 0.250 3.750
11 C -0.357 4.357
12 H 0.130 0.870
13 C 0.034 3.966
14 N -0.751 5.751
15 Si 1.020 2.980
16 H -0.256 1.256
17 H -0.244 1.244
18 H -0.243 1.243
19 N -0.578 5.578
20 H 0.435 0.565
21 H 0.114 0.886
22 H 0.100 0.900
23 H 0.114 0.886
24 H 0.173 0.827
25 H 0.334 0.666
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.065 7.512 0.006 7.587
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C 0.308 3.692
3 O -0.388 6.388
4 C -0.183 4.183
5 C -0.111 4.111
6 C -0.278 4.278
7 N 0.465 4.535
8 O -0.524 6.524
9 O -0.507 6.507
10 C 0.135 3.865
11 C -0.392 4.392
12 H 0.148 0.852
13 C -0.195 4.195
14 N -0.376 5.376
15 Si 0.835 3.165
16 H -0.179 1.179
17 H -0.167 1.167
18 H -0.167 1.167
19 N -0.195 5.195
20 H 0.283 0.717
21 H 0.133 0.867
22 H 0.119 0.881
23 H 0.133 0.867
24 H 0.191 0.809
25 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 1.317 8.494 0.008 8.595
hybrid contribution 0.677 -0.623 -0.001 0.920
sum 1.994 7.871 0.007 8.119
Atomic orbital electron populations
1.22172 0.88264 1.06391 1.06762 1.22389 0.93394 0.83878 0.69561
1.90390 1.73338 1.34681 1.40349 1.21375 0.84897 0.95793 1.16186
1.20937 0.98948 0.88373 1.02838 1.20173 0.97050 0.76752 1.33802
1.48914 1.00897 1.03313 1.00389 1.96023 1.07602 1.79301 1.69498
1.96013 1.25509 1.61452 1.67757 1.17847 0.92263 0.82588 0.93826
1.21821 0.88093 0.98101 1.31145 0.85239 1.28945 1.07403 0.94179
0.89013 1.68247 1.39573 1.06576 1.23168 0.84556 0.70985 0.80134
0.80842 1.17921 1.16699 1.16687 1.42130 1.06026 1.06104 1.65263
0.71653 0.86723 0.88142 0.86727 0.80912 0.85110
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.71 9.71 71.23 0.69 -3.01 15
2 C 0.43 14.02 7.26 28.12 0.20 14.23 15
3 O -0.51 -19.60 17.80 -1.66 -0.03 -19.63 15
4 C -0.07 -2.97 7.04 41.11 0.29 -2.68 15
5 C -0.08 -3.51 10.06 22.49 0.23 -3.28 15
6 C -0.16 -8.47 7.31 37.03 0.27 -8.20 15
7 N 0.07 3.97 4.98 -44.90 -0.22 3.75 15
8 O -0.39 -22.95 19.79 3.52 0.07 -22.88 15
9 O -0.37 -22.13 17.58 3.51 0.06 -22.07 15
10 C 0.25 12.32 6.72 39.02 0.26 12.58 15
11 C -0.36 -16.86 9.21 24.61 0.23 -16.63 15
12 H 0.13 6.50 5.92 -2.91 -0.02 6.48 15
13 C 0.03 1.31 5.67 87.18 0.49 1.80 15
14 N -0.75 -28.28 10.80 23.21 0.25 -28.03 15
15 Si 1.02 28.89 29.64 68.60 2.03 30.93 15
16 H -0.26 -7.91 7.11 99.48 0.71 -7.20 15
17 H -0.24 -6.29 7.11 99.48 0.71 -5.58 15
18 H -0.24 -6.28 7.11 99.48 0.71 -5.57 15
19 N -0.58 -25.81 5.77 -175.97 -1.01 -26.83 15
20 H 0.43 19.04 6.30 -92.70 -0.58 18.45 15
21 H 0.11 1.99 8.14 -2.39 -0.02 1.97 15
22 H 0.10 1.77 8.12 -2.39 -0.02 1.75 15
23 H 0.11 1.99 8.14 -2.39 -0.02 1.97 15
24 H 0.17 6.10 7.98 -2.91 -0.02 6.08 15
25 H 0.33 10.35 8.27 -92.71 -0.77 9.59 15
Total: -1.00 -66.52 243.52 4.48 -62.04
By element:
Atomic # 1 Polarization: 27.26 SS G_CDS: 0.67 Total: 27.93 kcal
Atomic # 6 Polarization: -7.87 SS G_CDS: 2.67 Total: -5.20 kcal
Atomic # 7 Polarization: -50.12 SS G_CDS: -0.99 Total: -51.11 kcal
Atomic # 8 Polarization: -64.68 SS G_CDS: 0.10 Total: -64.58 kcal
Atomic # 14 Polarization: 28.89 SS G_CDS: 2.03 Total: 30.93 kcal
Total: -66.52 4.48 -62.04 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261293892.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.793 kcal
(2) G-P(sol) polarization free energy of solvation -66.524 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.731 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.040 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.247 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds