Wall clock time and date at job start Mon Mar 30 2020 02:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31074 * 1 3 3 Si 1.86799 * 120.00182 * 2 1 4 4 H 1.48502 * 109.47178 * 239.99572 * 3 2 1 5 5 H 1.48496 * 109.47156 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47325 * 120.00091 * 3 2 1 7 7 C 1.39725 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00184 * 159.67081 * 7 2 1 9 9 C 1.41020 * 119.99791 * 339.67328 * 7 2 1 10 10 C 1.41628 * 120.99258 * 327.00371 * 9 7 2 11 11 N 1.35563 * 118.06368 * 179.97438 * 10 9 7 12 12 C 1.34609 * 121.14032 * 0.02562 * 11 10 9 13 13 O 1.21919 * 118.56930 * 179.97438 * 12 11 10 14 14 N 1.33002 * 122.86673 * 359.97438 * 12 11 10 15 15 C 1.32294 * 121.10080 * 359.97438 * 14 12 11 16 16 O 1.35102 * 120.59344 * 180.02562 * 15 14 12 17 17 C 1.47344 * 108.80809 * 179.97438 * 11 10 9 18 18 C 1.53879 * 104.12353 * 359.93237 * 17 11 10 19 19 O 1.34481 * 128.89229 * 359.97438 * 10 9 7 20 20 H 0.97004 * 119.99708 * 0.02562 * 1 2 3 21 21 H 0.96698 * 114.00659 * 0.02562 * 16 15 14 22 22 H 1.09000 * 110.52072 * 118.62892 * 17 11 10 23 23 H 1.08994 * 110.52356 * 241.23630 * 17 11 10 24 24 H 1.09005 * 110.47848 * 118.75060 * 18 17 11 25 25 H 1.08999 * 110.48053 * 241.38209 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 3.0986 1.6963 -1.2125 5 1 1.2799 2.7464 -0.0006 6 1 3.0986 1.6964 1.2125 7 6 2.0094 -1.2100 0.0005 8 1 3.0390 -1.2393 -0.3244 9 6 1.3701 -2.3931 0.4253 10 6 0.3840 -2.3647 1.4415 11 7 -0.1927 -3.5369 1.8035 12 6 0.1593 -4.6962 1.2169 13 8 -0.3893 -5.7230 1.5792 14 7 1.0794 -4.7705 0.2594 15 6 1.7055 -3.6879 -0.1721 16 8 2.6381 -3.7751 -1.1457 17 6 -1.1784 -3.2731 2.8664 18 6 -1.0978 -1.7519 3.0841 19 8 -0.0877 -1.3109 2.1311 20 1 -0.4850 0.8401 -0.0004 21 1 2.7842 -4.6739 -1.4711 22 1 -2.1781 -3.5599 2.5401 23 1 -0.9081 -3.8045 3.7788 24 1 -2.0580 -1.2841 2.8667 25 1 -0.7860 -1.5287 4.1044 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261301964.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:08 Heat of formation + Delta-G solvation = -55.715213 kcal Electronic energy + Delta-G solvation = -15646.079606 eV Core-core repulsion = 12819.625263 eV Total energy + Delta-G solvation = -2826.454343 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.063 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.00890 -38.41304 -37.35730 -34.64316 -33.82793 -32.81311 -30.32126 -28.87190 -24.85184 -23.44074 -22.99526 -21.51139 -18.81711 -18.08572 -16.93104 -16.46882 -15.47595 -15.17108 -14.54389 -14.47215 -14.41003 -13.40570 -13.30547 -13.25728 -12.55349 -12.40496 -11.75027 -11.66203 -11.37869 -11.16848 -10.62350 -10.35194 -9.75269 -9.42655 -9.08114 -8.98333 -8.77111 -7.15640 -6.67872 -4.18642 1.93548 2.88821 3.14014 3.17237 3.25779 3.27030 3.76253 4.04646 4.46440 4.60837 4.76014 5.01343 5.27649 5.31367 5.51666 5.72140 5.90258 6.07714 6.27168 6.70817 7.27450 7.50699 7.83836 8.04820 8.30596 8.60022 8.85185 8.94779 9.29244 10.33253 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.029434 B = 0.013444 C = 0.009631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.042531 B = 2082.152915 C = 2906.489329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.444 4.444 8 H 0.085 0.915 9 C -0.041 4.041 10 C 0.247 3.753 11 N -0.542 5.542 12 C 0.655 3.345 13 O -0.595 6.595 14 N -0.633 5.633 15 C 0.423 3.577 16 O -0.437 6.437 17 C 0.076 3.924 18 C 0.036 3.964 19 O -0.240 6.240 20 H 0.278 0.722 21 H 0.398 0.602 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 1.829 3.555 4.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.475 4.475 8 H 0.103 0.897 9 C -0.049 4.049 10 C 0.091 3.909 11 N -0.274 5.274 12 C 0.359 3.641 13 O -0.477 6.477 14 N -0.393 5.393 15 C 0.226 3.774 16 O -0.230 6.230 17 C -0.048 4.048 18 C -0.040 4.040 19 O -0.146 6.146 20 H 0.089 0.911 21 H 0.251 0.749 22 H 0.107 0.893 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.628 1.352 3.567 3.866 hybrid contribution -0.116 0.935 0.176 0.958 sum -0.744 2.286 3.743 4.449 Atomic orbital electron populations 1.69768 1.07399 1.29189 1.35894 1.25601 0.94605 1.00741 0.93466 0.86329 0.79947 0.80579 0.79619 1.19349 1.20751 1.19185 1.18633 0.98776 0.90058 1.40076 0.89722 1.16933 1.00224 0.91208 0.96561 1.20450 0.98607 0.76874 0.95006 1.47287 1.36145 1.09231 1.34779 1.16656 0.83837 0.81465 0.82179 1.90817 1.57951 1.32161 1.66727 1.69303 1.18753 1.29039 1.22173 1.21837 0.83337 0.89448 0.82757 1.84983 1.53211 1.35467 1.49337 1.22760 0.94128 0.96092 0.91782 1.24189 0.93491 0.92150 0.94153 1.87168 1.51804 1.27545 1.48048 0.91119 0.74867 0.89265 0.89172 0.88882 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.02 10.95 55.54 0.61 -19.42 15 2 C 0.07 1.77 4.80 -17.32 -0.08 1.68 15 3 Si 0.91 18.69 29.61 -169.99 -5.03 13.66 15 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 15 6 H -0.27 -5.47 7.11 56.52 0.40 -5.06 15 7 C -0.44 -11.33 8.73 -37.97 -0.33 -11.66 15 8 H 0.08 2.10 7.92 -52.48 -0.42 1.69 15 9 C -0.04 -1.04 5.63 -104.23 -0.59 -1.63 15 10 C 0.25 5.97 6.94 -14.61 -0.10 5.87 15 11 N -0.54 -12.50 3.09 -119.84 -0.37 -12.87 15 12 C 0.66 16.83 8.45 -88.64 -0.75 16.08 15 13 O -0.59 -16.38 17.66 4.99 0.09 -16.29 15 14 N -0.63 -15.63 10.36 -15.22 -0.16 -15.79 15 15 C 0.42 9.94 8.09 -14.03 -0.11 9.83 15 16 O -0.44 -8.57 13.17 -17.01 -0.22 -8.80 15 17 C 0.08 1.32 7.50 -3.12 -0.02 1.30 15 18 C 0.04 0.58 8.23 37.62 0.31 0.89 15 19 O -0.24 -5.34 8.60 -15.25 -0.13 -5.47 15 20 H 0.28 6.52 8.30 -40.82 -0.34 6.18 15 21 H 0.40 5.68 8.99 45.56 0.41 6.08 15 22 H 0.09 1.43 8.14 -51.93 -0.42 1.01 15 23 H 0.09 1.38 8.14 -51.93 -0.42 0.95 15 24 H 0.09 1.27 8.14 -51.93 -0.42 0.85 15 25 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 LS Contribution 230.89 15.07 3.48 3.48 Total: -1.00 -32.80 230.89 -4.25 -37.05 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -0.83 Total: 2.09 kcal Atomic # 6 Polarization: 24.04 SS G_CDS: -1.68 Total: 22.36 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.08 Total: -48.07 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.27 Total: -30.57 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -32.80 -4.25 -37.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301964.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.667 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds